RNA–Protein interactions for RNA: ENST00000459994.2

SDF4-204, Transcript of stromal cell derived factor 4, humanhuman

TSL 5

Gene SDF4, Length 604 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-204ENST00000459994 RALGAPBQ86X10 1494 aa22.3■■□□□ 1.16
SDF4-204ENST00000459994 GPRASP1Q5JY77 1395 aa22.3■■□□□ 1.16
SDF4-204ENST00000459994 NGDNQ8NEJ9 315 aaKnown RBP22.3■■□□□ 1.16
SDF4-204ENST00000459994 HAP1P54257 671 aaPredicted RBP22.29■■□□□ 1.16
SDF4-204ENST00000459994 UNC5CLQ8IV45 518 aa22.29■■□□□ 1.16
SDF4-204ENST00000459994 COL14A1Q05707 1796 aaKnown RBP22.28■■□□□ 1.16
SDF4-204ENST00000459994 CENPJQ9HC77 1338 aaPredicted RBP22.28■■□□□ 1.16
SDF4-204ENST00000459994 TONSLQ96HA7 1378 aa22.27■■□□□ 1.16
SDF4-204ENST00000459994 FAM83GA6ND36 823 aa22.27■■□□□ 1.16
SDF4-204ENST00000459994 NBPF8Q3BBV2 869 aa22.27■■□□□ 1.16
SDF4-204ENST00000459994 GJD4Q96KN9 370 aaPredicted RBP22.27■■□□□ 1.16
SDF4-204ENST00000459994 PAK3O75914 559 aaPredicted RBP22.26■■□□□ 1.15
SDF4-204ENST00000459994 ACEP12821 1306 aa22.26■■□□□ 1.15
SDF4-204ENST00000459994 POLR3AO14802 1390 aaPredicted RBP22.25■■□□□ 1.15
SDF4-204ENST00000459994 ZEB1P37275 1124 aaPredicted RBP22.24■■□□□ 1.15
SDF4-204ENST00000459994 CABP2Q9NPB3 220 aa22.24■■□□□ 1.15
SDF4-204ENST00000459994 PPIP5K1Q6PFW1 1433 aa22.23■■□□□ 1.15
SDF4-204ENST00000459994 EP400Q96L91 3159 aa22.22■■□□□ 1.15
SDF4-204ENST00000459994 NUTM2GQ5VZR2 741 aa22.22■■□□□ 1.15
SDF4-204ENST00000459994 CCDC61Q9Y6R9 512 aa22.22■■□□□ 1.15
SDF4-204ENST00000459994 PLEKHG3A1L390 1219 aa22.21■■□□□ 1.15
SDF4-204ENST00000459994 ROCK2O75116 1388 aaKnown RBP22.21■■□□□ 1.15
SDF4-204ENST00000459994 NRKQ7Z2Y5 1582 aa22.21■■□□□ 1.15
SDF4-204ENST00000459994 SRPK2P78362 688 aaKnown RBP22.2■■□□□ 1.14
SDF4-204ENST00000459994 AKAP12Q02952 1782 aa22.2■■□□□ 1.14
SDF4-204ENST00000459994 ATAD2Q6PL18 1390 aa22.19■■□□□ 1.14
SDF4-204ENST00000459994 VPS72Q15906 364 aa22.18■■□□□ 1.14
SDF4-204ENST00000459994 BTG4Q9NY30 223 aa22.17■■□□□ 1.14
SDF4-204ENST00000459994 PIK3C2AO00443 1686 aa22.15■■□□□ 1.14
SDF4-204ENST00000459994 KIAA0232Q92628 1395 aa22.14■■□□□ 1.14
SDF4-204ENST00000459994 CHRNA2Q15822 529 aa22.14■■□□□ 1.13
SDF4-204ENST00000459994 CCDC9Q9Y3X0 531 aaKnown RBP22.14■■□□□ 1.13
SDF4-204ENST00000459994 LMO7Q8WWI1 1683 aa22.14■■□□□ 1.13
SDF4-204ENST00000459994 CABP1Q9NZU7 370 aa22.13■■□□□ 1.13
SDF4-204ENST00000459994 ZC3H6P61129 1189 aaKnown RBP22.12■■□□□ 1.13
SDF4-204ENST00000459994 SEPT12Q8IYM1 358 aa22.12■■□□□ 1.13
SDF4-204ENST00000459994 THSD7AQ9UPZ6 1657 aa22.11■■□□□ 1.13
SDF4-204ENST00000459994 PRDM11Q9NQV5 511 aa22.11■■□□□ 1.13
SDF4-204ENST00000459994 USP6P35125 1406 aa22.11■■□□□ 1.13
SDF4-204ENST00000459994 ABTB2Q8N961 1025 aa22.1■■□□□ 1.13
SDF4-204ENST00000459994 EVC2Q86UK5 1308 aa22.09■■□□□ 1.13
SDF4-204ENST00000459994 MON2Q7Z3U7 1717 aa22.09■■□□□ 1.13
SDF4-204ENST00000459994 ONECUT3O60422 494 aaPredicted RBP22.09■■□□□ 1.13
SDF4-204ENST00000459994 CAMTA1Q9Y6Y1 1673 aa22.09■■□□□ 1.13
SDF4-204ENST00000459994 RGPD5Q99666 1765 aa22.09■■□□□ 1.13
SDF4-204ENST00000459994 USP19O94966 1318 aa22.08■■□□□ 1.13
SDF4-204ENST00000459994 SSH2Q76I76 1423 aa22.08■■□□□ 1.13
SDF4-204ENST00000459994 FAM98CQ17RN3 349 aaKnown RBP22.08■■□□□ 1.13
SDF4-204ENST00000459994 SPATA31A5Q5VU36 1347 aa22.06■■□□□ 1.12
SDF4-204ENST00000459994 SPATA31A7Q8IWB4 1347 aa22.06■■□□□ 1.12
SDF4-204ENST00000459994 COL18A1P39060 1754 aa22.06■■□□□ 1.12
SDF4-204ENST00000459994 SLIT3O75094 1523 aa22.06■■□□□ 1.12
SDF4-204ENST00000459994 CARD11Q9BXL7 1154 aa22.05■■□□□ 1.12
SDF4-204ENST00000459994 STRN4Q9NRL3 753 aa22.03■■□□□ 1.12
SDF4-204ENST00000459994 CPDO75976 1380 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 SBNO2Q9Y2G9 1366 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 CPSF1Q10570 1443 aaKnown RBP22.01■■□□□ 1.11
SDF4-204ENST00000459994 A0A0G2JS52 829 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 GCP02774 474 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 MYT1Q01538 1121 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 FAM182BQ5T319 152 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 KRT27Q7Z3Y8 459 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 CD163L1Q9NR16 1453 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 SPATA31A1Q5TZJ5 1347 aa22.01■■□□□ 1.11
SDF4-204ENST00000459994 NLRP13Q86W25 1043 aa22■■□□□ 1.11
SDF4-204ENST00000459994 TNS1Q9HBL0 1735 aaKnown RBP22■■□□□ 1.11
SDF4-204ENST00000459994 BRD4O60885 1362 aaPredicted RBP21.99■■□□□ 1.11
SDF4-204ENST00000459994 BLMP54132 1417 aaPredicted RBP21.99■■□□□ 1.11
SDF4-204ENST00000459994 NLRP6P59044 892 aa21.98■■□□□ 1.11
SDF4-204ENST00000459994 DEFB132Q7Z7B7 95 aa21.98■■□□□ 1.11
SDF4-204ENST00000459994 WNK3Q9BYP7 1800 aa21.98■■□□□ 1.11
SDF4-204ENST00000459994 TTC21BQ7Z4L5 1316 aa21.98■■□□□ 1.11
SDF4-204ENST00000459994 RGPD1P0DJD0 1748 aa21.97■■□□□ 1.11
SDF4-204ENST00000459994 LARP1Q6PKG0 1096 aaKnown RBP21.97■■□□□ 1.11
SDF4-204ENST00000459994 USP54Q70EL1 1684 aa21.97■■□□□ 1.11
SDF4-204ENST00000459994 COL5A2P05997 1499 aaPredicted RBP21.96■■□□□ 1.11
SDF4-204ENST00000459994 USP35Q9P2H5 1018 aa21.96■■□□□ 1.11
SDF4-204ENST00000459994 ZBTB7CA1YPR0 619 aa21.95■■□□□ 1.1
SDF4-204ENST00000459994 ZRANB1Q9UGI0 708 aa21.95■■□□□ 1.1
SDF4-204ENST00000459994 CCDC125Q86Z20 511 aa21.94■■□□□ 1.1
SDF4-204ENST00000459994 KTN1Q86UP2 1357 aaKnown RBP21.94■■□□□ 1.1
SDF4-204ENST00000459994 NFAT5O94916 1531 aa21.94■■□□□ 1.1
SDF4-204ENST00000459994 PARP4Q9UKK3 1724 aaKnown RBP21.94■■□□□ 1.1
SDF4-204ENST00000459994 LTN1O94822 1766 aa21.94■■□□□ 1.1
SDF4-204ENST00000459994 EVA1CP58658 441 aa21.92■■□□□ 1.1
SDF4-204ENST00000459994 ZNF692Q9BU19 519 aaPredicted RBP21.92■■□□□ 1.1
SDF4-204ENST00000459994 TESK2Q96S53 571 aa21.91■■□□□ 1.1
SDF4-204ENST00000459994 SLC12A5Q9H2X9 1139 aa21.91■■□□□ 1.1
SDF4-204ENST00000459994 ST20-MTHFSA0A0A6YYL1 179 aa21.9■■□□□ 1.1
SDF4-204ENST00000459994 SOX12O15370 315 aa21.9■■□□□ 1.1
SDF4-204ENST00000459994 AXIN2Q9Y2T1 843 aa21.9■■□□□ 1.1
SDF4-204ENST00000459994 TTC21AQ8NDW8 1320 aa21.89■■□□□ 1.1
SDF4-204ENST00000459994 LRRC37A3O60309 1634 aa21.89■■□□□ 1.09
SDF4-204ENST00000459994 AATKQ6ZMQ8 1374 aa21.88■■□□□ 1.09
SDF4-204ENST00000459994 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.88■■□□□ 1.09
SDF4-204ENST00000459994 TMC1Q8TDI8 760 aa21.88■■□□□ 1.09
SDF4-204ENST00000459994 NME9Q86XW9 330 aa21.87■■□□□ 1.09
SDF4-204ENST00000459994 SBF2Q86WG5 1849 aa21.87■■□□□ 1.09
SDF4-204ENST00000459994 A0A1W2PP64 1363 aa21.87■■□□□ 1.09
SDF4-204ENST00000459994 BARGINQ6ZT62 677 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms