RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 TULP4Q9NRJ4 1543 aa26.55■■□□□ 1.84
HOXD3-204ENST00000459979 DEFB132Q7Z7B7 95 aa26.53■■□□□ 1.84
HOXD3-204ENST00000459979 CRYBG1Q9Y4K1 1723 aa26.53■■□□□ 1.84
HOXD3-204ENST00000459979 GPRASP1Q5JY77 1395 aa26.51■■□□□ 1.83
HOXD3-204ENST00000459979 TONSLQ96HA7 1378 aa26.51■■□□□ 1.83
HOXD3-204ENST00000459979 COL14A1Q05707 1796 aaKnown RBP26.51■■□□□ 1.83
HOXD3-204ENST00000459979 NBPF8Q3BBV2 869 aa26.49■■□□□ 1.83
HOXD3-204ENST00000459979 ITSN1Q15811 1721 aa26.48■■□□□ 1.83
HOXD3-204ENST00000459979 A0A0G2JS52 829 aa26.48■■□□□ 1.83
HOXD3-204ENST00000459979 MYT1Q01538 1121 aa26.48■■□□□ 1.83
HOXD3-204ENST00000459979 BTG4Q9NY30 223 aa26.48■■□□□ 1.83
HOXD3-204ENST00000459979 CENPJQ9HC77 1338 aaPredicted RBP26.47■■□□□ 1.83
HOXD3-204ENST00000459979 ONECUT3O60422 494 aaPredicted RBP26.47■■□□□ 1.83
HOXD3-204ENST00000459979 KRT27Q7Z3Y8 459 aa26.47■■□□□ 1.83
HOXD3-204ENST00000459979 PCGF6Q9BYE7 350 aa26.47■■□□□ 1.83
HOXD3-204ENST00000459979 ROCK2O75116 1388 aaKnown RBP26.46■■□□□ 1.83
HOXD3-204ENST00000459979 SRCAPQ6ZRS2 3230 aa26.46■■□□□ 1.83
HOXD3-204ENST00000459979 NGDNQ8NEJ9 315 aaKnown RBP26.46■■□□□ 1.83
HOXD3-204ENST00000459979 PAK3O75914 559 aaPredicted RBP26.45■■□□□ 1.82
HOXD3-204ENST00000459979 SF3B2Q13435 895 aaKnown RBP26.45■■□□□ 1.82
HOXD3-204ENST00000459979 FAM98CQ17RN3 349 aaKnown RBP26.45■■□□□ 1.82
HOXD3-204ENST00000459979 CDK19Q9BWU1 502 aa26.44■■□□□ 1.82
HOXD3-204ENST00000459979 ATP7BP35670 1465 aa26.43■■□□□ 1.82
HOXD3-204ENST00000459979 CLSPNQ9HAW4 1339 aa26.43■■□□□ 1.82
HOXD3-204ENST00000459979 NUDT16Q96DE0 195 aaKnown RBP26.42■■□□□ 1.82
HOXD3-204ENST00000459979 QRICH2Q9H0J4 1663 aa26.41■■□□□ 1.82
HOXD3-204ENST00000459979 PHRF1Q9P1Y6 1649 aaKnown RBP26.4■■□□□ 1.82
HOXD3-204ENST00000459979 CCDC61Q9Y6R9 512 aa26.38■■□□□ 1.81
HOXD3-204ENST00000459979 TOPAZ1Q8N9V7 1692 aa26.38■■□□□ 1.81
HOXD3-204ENST00000459979 FAM182BQ5T319 152 aa26.37■■□□□ 1.81
HOXD3-204ENST00000459979 PRDM11Q9NQV5 511 aa26.37■■□□□ 1.81
HOXD3-204ENST00000459979 THSD7AQ9UPZ6 1657 aa26.36■■□□□ 1.81
HOXD3-204ENST00000459979 SPATA31A5Q5VU36 1347 aa26.36■■□□□ 1.81
HOXD3-204ENST00000459979 SPATA31A7Q8IWB4 1347 aa26.36■■□□□ 1.81
HOXD3-204ENST00000459979 NUTM2GQ5VZR2 741 aa26.35■■□□□ 1.81
HOXD3-204ENST00000459979 TIMELESSQ9UNS1 1208 aa26.35■■□□□ 1.81
HOXD3-204ENST00000459979 RGPD1P0DJD0 1748 aa26.34■■□□□ 1.81
HOXD3-204ENST00000459979 PLEKHG3A1L390 1219 aa26.34■■□□□ 1.81
HOXD3-204ENST00000459979 CHRNA2Q15822 529 aa26.34■■□□□ 1.81
HOXD3-204ENST00000459979 KIAA0232Q92628 1395 aa26.33■■□□□ 1.81
HOXD3-204ENST00000459979 CARD11Q9BXL7 1154 aa26.33■■□□□ 1.81
HOXD3-204ENST00000459979 POLR3AO14802 1390 aaPredicted RBP26.32■■□□□ 1.8
HOXD3-204ENST00000459979 BAG6P46379 1132 aa26.31■■□□□ 1.8
HOXD3-204ENST00000459979 SBNO2Q9Y2G9 1366 aa26.31■■□□□ 1.8
HOXD3-204ENST00000459979 TNS1Q9HBL0 1735 aaKnown RBP26.31■■□□□ 1.8
HOXD3-204ENST00000459979 PSDA5PKW4 1024 aaPredicted RBP26.3■■□□□ 1.8
HOXD3-204ENST00000459979 SRPK2P78362 688 aaKnown RBP26.3■■□□□ 1.8
HOXD3-204ENST00000459979 EVC2Q86UK5 1308 aa26.3■■□□□ 1.8
HOXD3-204ENST00000459979 ZC3H6P61129 1189 aaKnown RBP26.29■■□□□ 1.8
HOXD3-204ENST00000459979 STRN4Q9NRL3 753 aa26.29■■□□□ 1.8
HOXD3-204ENST00000459979 ACEP12821 1306 aa26.29■■□□□ 1.8
HOXD3-204ENST00000459979 CABP2Q9NPB3 220 aa26.28■■□□□ 1.8
HOXD3-204ENST00000459979 EN1Q05925 392 aaPredicted RBP26.27■■□□□ 1.8
HOXD3-204ENST00000459979 LRP5O75197 1615 aa26.27■■□□□ 1.8
HOXD3-204ENST00000459979 NRKQ7Z2Y5 1582 aa26.26■■□□□ 1.79
HOXD3-204ENST00000459979 SPATA31A1Q5TZJ5 1347 aa26.26■■□□□ 1.79
HOXD3-204ENST00000459979 PPIP5K1Q6PFW1 1433 aa26.24■■□□□ 1.79
HOXD3-204ENST00000459979 USP35Q9P2H5 1018 aa26.22■■□□□ 1.79
HOXD3-204ENST00000459979 BRD4O60885 1362 aaPredicted RBP26.2■■□□□ 1.79
HOXD3-204ENST00000459979 CAMTA1Q9Y6Y1 1673 aa26.2■■□□□ 1.78
HOXD3-204ENST00000459979 ABTB2Q8N961 1025 aa26.2■■□□□ 1.78
HOXD3-204ENST00000459979 LMO7Q8WWI1 1683 aa26.19■■□□□ 1.78
HOXD3-204ENST00000459979 CABP1Q9NZU7 370 aa26.19■■□□□ 1.78
HOXD3-204ENST00000459979 SSH2Q76I76 1423 aa26.19■■□□□ 1.78
HOXD3-204ENST00000459979 TRIM37O94972 964 aa26.17■■□□□ 1.78
HOXD3-204ENST00000459979 EVA1CP58658 441 aa26.17■■□□□ 1.78
HOXD3-204ENST00000459979 DISP2A7MBM2 1401 aa26.16■■□□□ 1.78
HOXD3-204ENST00000459979 EZH2Q15910 746 aaKnown RBP26.16■■□□□ 1.78
HOXD3-204ENST00000459979 CCER1Q8TC90 406 aaPredicted RBP26.16■■□□□ 1.78
HOXD3-204ENST00000459979 SLC24A1O60721 1099 aa26.15■■□□□ 1.78
HOXD3-204ENST00000459979 LARP1Q6PKG0 1096 aaKnown RBP26.15■■□□□ 1.78
HOXD3-204ENST00000459979 PUS7Q96PZ0 661 aaKnown RBP26.15■■□□□ 1.78
HOXD3-204ENST00000459979 USP19O94966 1318 aa26.14■■□□□ 1.78
HOXD3-204ENST00000459979 R3HDM1Q15032 1099 aaKnown RBP26.14■■□□□ 1.78
HOXD3-204ENST00000459979 TESK2Q96S53 571 aa26.13■■□□□ 1.77
HOXD3-204ENST00000459979 USP6P35125 1406 aa26.13■■□□□ 1.77
HOXD3-204ENST00000459979 CPDO75976 1380 aa26.12■■□□□ 1.77
HOXD3-204ENST00000459979 FAM196AQ6ZSG2 479 aa26.12■■□□□ 1.77
HOXD3-204ENST00000459979 ST20-MTHFSA0A0A6YYL1 179 aa26.11■■□□□ 1.77
HOXD3-204ENST00000459979 ZNF692Q9BU19 519 aaPredicted RBP26.11■■□□□ 1.77
HOXD3-204ENST00000459979 BARGINQ6ZT62 677 aa26.1■■□□□ 1.77
HOXD3-204ENST00000459979 NLRP13Q86W25 1043 aa26.1■■□□□ 1.77
HOXD3-204ENST00000459979 ZBTB7CA1YPR0 619 aa26.09■■□□□ 1.77
HOXD3-204ENST00000459979 GCP02774 474 aa26.09■■□□□ 1.77
HOXD3-204ENST00000459979 CAMKK2Q96RR4 588 aa26.09■■□□□ 1.77
HOXD3-204ENST00000459979 AKAP12Q02952 1782 aa26.08■■□□□ 1.77
HOXD3-204ENST00000459979 CPSF1Q10570 1443 aaKnown RBP26.08■■□□□ 1.77
HOXD3-204ENST00000459979 APBA3O96018 575 aa26.08■■□□□ 1.77
HOXD3-204ENST00000459979 PDE3BQ13370 1112 aa26.08■■□□□ 1.77
HOXD3-204ENST00000459979 TCP11L2Q8N4U5 519 aa26.08■■□□□ 1.77
HOXD3-204ENST00000459979 RREB1Q92766 1687 aa26.08■■□□□ 1.77
HOXD3-204ENST00000459979 COL5A2P05997 1499 aaPredicted RBP26.07■■□□□ 1.76
HOXD3-204ENST00000459979 PARP4Q9UKK3 1724 aaKnown RBP26.07■■□□□ 1.76
HOXD3-204ENST00000459979 USP47Q96K76 1375 aa26.07■■□□□ 1.76
HOXD3-204ENST00000459979 NUP188Q5SRE5 1749 aa26.06■■□□□ 1.76
HOXD3-204ENST00000459979 PIK3C2AO00443 1686 aa26.06■■□□□ 1.76
HOXD3-204ENST00000459979 SLIT3O75094 1523 aa26.04■■□□□ 1.76
HOXD3-204ENST00000459979 NLRP6P59044 892 aa26.03■■□□□ 1.76
HOXD3-204ENST00000459979 COL18A1P39060 1754 aa26.02■■□□□ 1.76
HOXD3-204ENST00000459979 RGPD5Q99666 1765 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms