RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 ADGRB3O60242 1522 aa10.88□□□□□ -0.67
VPS50-208ENST00000458707 RSPH6AQ9H0K4 717 aa10.87□□□□□ -0.67
VPS50-208ENST00000458707 ANTXR1Q9H6X2 564 aa10.87□□□□□ -0.67
VPS50-208ENST00000458707 PANK1Q8TE04 598 aa10.87□□□□□ -0.67
VPS50-208ENST00000458707 COG6Q9Y2V7 657 aa10.87□□□□□ -0.67
VPS50-208ENST00000458707 LMTK2Q8IWU2 1503 aa10.86□□□□□ -0.67
VPS50-208ENST00000458707 ADGRL1O94910 1474 aa10.86□□□□□ -0.67
VPS50-208ENST00000458707 GALR2O43603 387 aaPredicted RBP10.86□□□□□ -0.67
VPS50-208ENST00000458707 RARSP54136 660 aaKnown RBP10.86□□□□□ -0.67
VPS50-208ENST00000458707 KIDINS220Q9ULH0 1771 aa10.86□□□□□ -0.67
VPS50-208ENST00000458707 CCDC27Q2M243 656 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 CFAP70Q5T0N1 1121 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 WDR63Q8IWG1 891 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 RUNDC1Q96C34 613 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 TBC1D32Q96NH3 1257 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 FANCAO15360 1455 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 ZNF518AQ6AHZ1 1483 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 ARHGEF28Q8N1W1 1705 aaKnown RBP10.85□□□□□ -0.67
VPS50-208ENST00000458707 ANKRD26Q9UPS8 1709 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 CANXP27824 592 aaKnown RBP10.85□□□□□ -0.67
VPS50-208ENST00000458707 TAF7LQ5H9L4 462 aa10.85□□□□□ -0.67
VPS50-208ENST00000458707 ADGRB1O14514 1584 aa10.84□□□□□ -0.67
VPS50-208ENST00000458707 ADGRF5Q8IZF2 1346 aa10.84□□□□□ -0.67
VPS50-208ENST00000458707 NSD3Q9BZ95 1437 aa10.84□□□□□ -0.67
VPS50-208ENST00000458707 CFAP65Q6ZU64 1925 aaKnown RBP10.84□□□□□ -0.67
VPS50-208ENST00000458707 FAM69CQ0P6D2 419 aa10.84□□□□□ -0.67
VPS50-208ENST00000458707 NPM1P06748 294 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS50-208ENST00000458707 AFAP1Q8N556 730 aa10.83□□□□□ -0.68
VPS50-208ENST00000458707 POGKQ9P215 609 aa10.83□□□□□ -0.68
VPS50-208ENST00000458707 PCDHB15Q9Y5E8 787 aa10.83□□□□□ -0.68
VPS50-208ENST00000458707 L1TD1Q5T7N2 865 aaKnown RBP10.82□□□□□ -0.68
VPS50-208ENST00000458707 UPF2Q9HAU5 1272 aaKnown RBP10.82□□□□□ -0.68
VPS50-208ENST00000458707 RLBP1P12271 317 aa10.81□□□□□ -0.68
VPS50-208ENST00000458707 TCP11L2Q8N4U5 519 aa10.81□□□□□ -0.68
VPS50-208ENST00000458707 RWDD1Q9H446 243 aaPredicted RBP10.81□□□□□ -0.68
VPS50-208ENST00000458707 PDZRN3Q9UPQ7 1066 aa10.81□□□□□ -0.68
VPS50-208ENST00000458707 MNX1P50219 401 aaPredicted RBP10.81□□□□□ -0.68
VPS50-208ENST00000458707 RBM10P98175 930 aaKnown RBP10.81□□□□□ -0.68
VPS50-208ENST00000458707 TBC1D2Q9BYX2 928 aa10.81□□□□□ -0.68
VPS50-208ENST00000458707 GLI2P10070 1586 aa10.8□□□□□ -0.68
VPS50-208ENST00000458707 MORC1Q86VD1 984 aa10.8□□□□□ -0.68
VPS50-208ENST00000458707 SLKQ9H2G2 1235 aaPredicted RBP10.8□□□□□ -0.68
VPS50-208ENST00000458707 NSD2O96028 1365 aa10.79□□□□□ -0.68
VPS50-208ENST00000458707 NOS1P29475 1434 aa10.79□□□□□ -0.68
VPS50-208ENST00000458707 CT47B1P0C2W7 299 aaPredicted RBP10.79□□□□□ -0.68
VPS50-208ENST00000458707 MVPQ14764 893 aaKnown RBP10.78□□□□□ -0.68
VPS50-208ENST00000458707 PUS7Q96PZ0 661 aaKnown RBP10.78□□□□□ -0.68
VPS50-208ENST00000458707 MYH16Q9H6N6 1097 aa10.78□□□□□ -0.68
VPS50-208ENST00000458707 TNNQ9UQP3 1299 aa10.78□□□□□ -0.68
VPS50-208ENST00000458707 PIK3C2BO00750 1634 aa10.78□□□□□ -0.68
VPS50-208ENST00000458707 KIF3BO15066 747 aa10.78□□□□□ -0.68
VPS50-208ENST00000458707 TULP4Q9NRJ4 1543 aa10.77□□□□□ -0.68
VPS50-208ENST00000458707 CAMSAP1Q5T5Y3 1602 aa10.77□□□□□ -0.69
VPS50-208ENST00000458707 FSD2A1L4K1 749 aa10.77□□□□□ -0.69
VPS50-208ENST00000458707 VSIG10Q8N0Z9 540 aa10.77□□□□□ -0.69
VPS50-208ENST00000458707 PHF12Q96QT6 1004 aa10.77□□□□□ -0.69
VPS50-208ENST00000458707 BCL11BQ9C0K0 894 aaPredicted RBP10.77□□□□□ -0.69
VPS50-208ENST00000458707 RRP7AQ9Y3A4 280 aaKnown RBP10.77□□□□□ -0.69
VPS50-208ENST00000458707 CFAP53Q96M91 514 aa10.76□□□□□ -0.69
VPS50-208ENST00000458707 C14orf93Q9H972 538 aaKnown RBP10.76□□□□□ -0.69
VPS50-208ENST00000458707 MTHFSP49914 203 aa10.76□□□□□ -0.69
VPS50-208ENST00000458707 NEUROD2Q15784 382 aa10.76□□□□□ -0.69
VPS50-208ENST00000458707 ZKSCAN2Q63HK3 967 aa10.76□□□□□ -0.69
VPS50-208ENST00000458707 SLC12A5Q9H2X9 1139 aa10.76□□□□□ -0.69
VPS50-208ENST00000458707 NCOA3Q9Y6Q9 1424 aa10.76□□□□□ -0.69
VPS50-208ENST00000458707 SIGLEC1Q9BZZ2 1709 aa10.76□□□□□ -0.69
VPS50-208ENST00000458707 COL3A1P02461 1466 aaPredicted RBP10.75□□□□□ -0.69
VPS50-208ENST00000458707 MCM4P33991 863 aa10.75□□□□□ -0.69
VPS50-208ENST00000458707 CLTCQ00610 1675 aaKnown RBP10.75□□□□□ -0.69
VPS50-208ENST00000458707 HDAC1Q13547 482 aaPredicted RBP10.75□□□□□ -0.69
VPS50-208ENST00000458707 ANKRD36BQ8N2N9 1353 aa10.75□□□□□ -0.69
VPS50-208ENST00000458707 KIF20BQ96Q89 1820 aa10.75□□□□□ -0.69
VPS50-208ENST00000458707 DZIP1LQ8IYY4 767 aaKnown RBP10.74□□□□□ -0.69
VPS50-208ENST00000458707 KIF13AQ9H1H9 1805 aa10.74□□□□□ -0.69
VPS50-208ENST00000458707 OTUD5Q96G74 571 aa10.74□□□□□ -0.69
VPS50-208ENST00000458707 BCL2L13Q9BXK5 485 aa10.74□□□□□ -0.69
VPS50-208ENST00000458707 C22orf23Q9BZE7 217 aa10.74□□□□□ -0.69
VPS50-208ENST00000458707 RRAGDQ9NQL2 400 aaPredicted RBP10.74□□□□□ -0.69
VPS50-208ENST00000458707 CHMP5Q9NZZ3 219 aa10.74□□□□□ -0.69
VPS50-208ENST00000458707 CFAP74Q9C0B2 1584 aa10.73□□□□□ -0.69
VPS50-208ENST00000458707 CD109Q6YHK3 1445 aa10.73□□□□□ -0.69
VPS50-208ENST00000458707 RPGRIP1LQ68CZ1 1315 aa10.73□□□□□ -0.69
VPS50-208ENST00000458707 FRMPD1Q5SYB0 1578 aa10.73□□□□□ -0.69
VPS50-208ENST00000458707 NEXMIFQ5QGS0 1516 aa10.73□□□□□ -0.69
VPS50-208ENST00000458707 NPATQ14207 1427 aa10.73□□□□□ -0.69
VPS50-208ENST00000458707 GOLGA6L3A6NEY3 463 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 XRCC6P12956 609 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS50-208ENST00000458707 SMC5Q8IY18 1101 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 MYO5BQ9ULV0 1848 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 MED14O60244 1454 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 ABCC11Q96J66 1382 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 CDC42BPGQ6DT37 1551 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 TNNT2P45379 298 aaPredicted RBP10.72□□□□□ -0.69
VPS50-208ENST00000458707 DDX19BQ9UMR2 479 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 TRAK1Q9UPV9 953 aa10.72□□□□□ -0.69
VPS50-208ENST00000458707 IL16Q14005 1332 aa10.71□□□□□ -0.69
VPS50-208ENST00000458707 DDIT3P35638 169 aa10.71□□□□□ -0.69
VPS50-208ENST00000458707 FTSJ3Q8IY81 847 aaKnown RBP10.71□□□□□ -0.69
VPS50-208ENST00000458707 PLEKHF1Q96S99 279 aa10.71□□□□□ -0.69
VPS50-208ENST00000458707 POTEB2H3BUK9 544 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms