RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 POLR3AO14802 1390 aaPredicted RBP30.34■■■□□ 2.45
HMGB3-205ENST00000455596 PAK3O75914 559 aaPredicted RBP30.34■■■□□ 2.45
HMGB3-205ENST00000455596 ACEP12821 1306 aa30.31■■■□□ 2.44
HMGB3-205ENST00000455596 PLEKHG3A1L390 1219 aa30.31■■■□□ 2.44
HMGB3-205ENST00000455596 PPIP5K1Q6PFW1 1433 aa30.3■■■□□ 2.44
HMGB3-205ENST00000455596 CABP2Q9NPB3 220 aa30.3■■■□□ 2.44
HMGB3-205ENST00000455596 UNC5CLQ8IV45 518 aa30.29■■■□□ 2.44
HMGB3-205ENST00000455596 EVC2Q86UK5 1308 aa30.27■■■□□ 2.44
HMGB3-205ENST00000455596 PHRF1Q9P1Y6 1649 aaKnown RBP30.27■■■□□ 2.44
HMGB3-205ENST00000455596 COL14A1Q05707 1796 aaKnown RBP30.27■■■□□ 2.44
HMGB3-205ENST00000455596 RALGAPBQ86X10 1494 aa30.26■■■□□ 2.44
HMGB3-205ENST00000455596 GJD4Q96KN9 370 aaPredicted RBP30.25■■■□□ 2.43
HMGB3-205ENST00000455596 NRAPQ86VF7 1730 aa30.24■■■□□ 2.43
HMGB3-205ENST00000455596 GLI3P10071 1580 aa30.24■■■□□ 2.43
HMGB3-205ENST00000455596 UPF1Q92900 1129 aaKnown RBP eCLIP30.23■■■□□ 2.43
HMGB3-205ENST00000455596 CARD11Q9BXL7 1154 aa30.22■■■□□ 2.43
HMGB3-205ENST00000455596 FAM83GA6ND36 823 aa30.21■■■□□ 2.43
HMGB3-205ENST00000455596 CABP1Q9NZU7 370 aa30.18■■■□□ 2.42
HMGB3-205ENST00000455596 AKAP12Q02952 1782 aa30.18■■■□□ 2.42
HMGB3-205ENST00000455596 BRD4O60885 1362 aaPredicted RBP30.16■■■□□ 2.42
HMGB3-205ENST00000455596 VPS72Q15906 364 aa30.16■■■□□ 2.42
HMGB3-205ENST00000455596 NUTM2GQ5VZR2 741 aa30.16■■■□□ 2.42
HMGB3-205ENST00000455596 SBNO2Q9Y2G9 1366 aa30.15■■■□□ 2.42
HMGB3-205ENST00000455596 BRWD3Q6RI45 1802 aa30.15■■■□□ 2.42
HMGB3-205ENST00000455596 ABTB2Q8N961 1025 aa30.15■■■□□ 2.42
HMGB3-205ENST00000455596 ATAD2Q6PL18 1390 aa30.14■■■□□ 2.41
HMGB3-205ENST00000455596 USP6P35125 1406 aa30.13■■■□□ 2.41
HMGB3-205ENST00000455596 NRKQ7Z2Y5 1582 aa30.13■■■□□ 2.41
HMGB3-205ENST00000455596 BTG4Q9NY30 223 aa30.13■■■□□ 2.41
HMGB3-205ENST00000455596 CCDC9Q9Y3X0 531 aaKnown RBP30.13■■■□□ 2.41
HMGB3-205ENST00000455596 PRDM11Q9NQV5 511 aa30.12■■■□□ 2.41
HMGB3-205ENST00000455596 KIAA0232Q92628 1395 aa30.09■■■□□ 2.41
HMGB3-205ENST00000455596 NLRP13Q86W25 1043 aa30.08■■■□□ 2.41
HMGB3-205ENST00000455596 USP19O94966 1318 aa30.07■■■□□ 2.4
HMGB3-205ENST00000455596 PIK3C2AO00443 1686 aa30.07■■■□□ 2.4
HMGB3-205ENST00000455596 ZC3H6P61129 1189 aaKnown RBP30.06■■■□□ 2.4
HMGB3-205ENST00000455596 MON2Q7Z3U7 1717 aa30.05■■■□□ 2.4
HMGB3-205ENST00000455596 ZNF692Q9BU19 519 aaPredicted RBP30.05■■■□□ 2.4
HMGB3-205ENST00000455596 PCGF6Q9BYE7 350 aa30.05■■■□□ 2.4
HMGB3-205ENST00000455596 SSH2Q76I76 1423 aa30.05■■■□□ 2.4
HMGB3-205ENST00000455596 CHRNA2Q15822 529 aa30.03■■■□□ 2.4
HMGB3-205ENST00000455596 SEPT12Q8IYM1 358 aa30.02■■■□□ 2.4
HMGB3-205ENST00000455596 CLSPNQ9HAW4 1339 aa30.01■■■□□ 2.4
HMGB3-205ENST00000455596 ONECUT3O60422 494 aaPredicted RBP30.01■■■□□ 2.39
HMGB3-205ENST00000455596 LMO7Q8WWI1 1683 aa30.01■■■□□ 2.39
HMGB3-205ENST00000455596 CPSF1Q10570 1443 aaKnown RBP30■■■□□ 2.39
HMGB3-205ENST00000455596 NLRP6P59044 892 aa30■■■□□ 2.39
HMGB3-205ENST00000455596 CPDO75976 1380 aa30■■■□□ 2.39
HMGB3-205ENST00000455596 GCP02774 474 aa29.99■■■□□ 2.39
HMGB3-205ENST00000455596 SLIT3O75094 1523 aa29.99■■■□□ 2.39
HMGB3-205ENST00000455596 SPATA31A5Q5VU36 1347 aa29.97■■■□□ 2.39
HMGB3-205ENST00000455596 SPATA31A7Q8IWB4 1347 aa29.97■■■□□ 2.39
HMGB3-205ENST00000455596 KTN1Q86UP2 1357 aaKnown RBP29.97■■■□□ 2.39
HMGB3-205ENST00000455596 TTC21BQ7Z4L5 1316 aa29.96■■■□□ 2.39
HMGB3-205ENST00000455596 TTC21AQ8NDW8 1320 aa29.96■■■□□ 2.39
HMGB3-205ENST00000455596 CAMTA1Q9Y6Y1 1673 aa29.95■■■□□ 2.39
HMGB3-205ENST00000455596 ST20-MTHFSA0A0A6YYL1 179 aa29.95■■■□□ 2.39
HMGB3-205ENST00000455596 A0A0G2JS52 829 aa29.95■■■□□ 2.39
HMGB3-205ENST00000455596 MYT1Q01538 1121 aa29.95■■■□□ 2.39
HMGB3-205ENST00000455596 FAM98CQ17RN3 349 aaKnown RBP29.95■■■□□ 2.39
HMGB3-205ENST00000455596 STRN4Q9NRL3 753 aa29.95■■■□□ 2.39
HMGB3-205ENST00000455596 TIMELESSQ9UNS1 1208 aa29.95■■■□□ 2.39
HMGB3-205ENST00000455596 THSD7AQ9UPZ6 1657 aa29.93■■■□□ 2.38
HMGB3-205ENST00000455596 PUS7Q96PZ0 661 aaKnown RBP29.93■■■□□ 2.38
HMGB3-205ENST00000455596 SLC24A1O60721 1099 aa29.92■■■□□ 2.38
HMGB3-205ENST00000455596 EVA1CP58658 441 aa29.92■■■□□ 2.38
HMGB3-205ENST00000455596 TMC1Q8TDI8 760 aa29.92■■■□□ 2.38
HMGB3-205ENST00000455596 TESK2Q96S53 571 aa29.92■■■□□ 2.38
HMGB3-205ENST00000455596 CD163L1Q9NR16 1453 aa29.92■■■□□ 2.38
HMGB3-205ENST00000455596 KRT27Q7Z3Y8 459 aa29.91■■■□□ 2.38
HMGB3-205ENST00000455596 CCDC125Q86Z20 511 aa29.91■■■□□ 2.38
HMGB3-205ENST00000455596 SPATA31A1Q5TZJ5 1347 aa29.91■■■□□ 2.38
HMGB3-205ENST00000455596 USP54Q70EL1 1684 aa29.9■■■□□ 2.38
HMGB3-205ENST00000455596 COL18A1P39060 1754 aa29.88■■■□□ 2.37
HMGB3-205ENST00000455596 HDGFL2Q7Z4V5 671 aaPredicted RBP29.88■■■□□ 2.37
HMGB3-205ENST00000455596 USP47Q96K76 1375 aa29.88■■■□□ 2.37
HMGB3-205ENST00000455596 RGPD5Q99666 1765 aa29.87■■■□□ 2.37
HMGB3-205ENST00000455596 ZBTB7CA1YPR0 619 aa29.87■■■□□ 2.37
HMGB3-205ENST00000455596 SLC12A5Q9H2X9 1139 aa29.87■■■□□ 2.37
HMGB3-205ENST00000455596 KCNH5Q8NCM2 988 aa29.86■■■□□ 2.37
HMGB3-205ENST00000455596 COL5A2P05997 1499 aaPredicted RBP29.86■■■□□ 2.37
HMGB3-205ENST00000455596 BLMP54132 1417 aaPredicted RBP29.85■■■□□ 2.37
HMGB3-205ENST00000455596 TERF2IPQ9NYB0 399 aa29.84■■■□□ 2.37
HMGB3-205ENST00000455596 AATKQ6ZMQ8 1374 aa29.84■■■□□ 2.37
HMGB3-205ENST00000455596 NINLQ9Y2I6 1382 aa29.83■■■□□ 2.37
HMGB3-205ENST00000455596 LARP1Q6PKG0 1096 aaKnown RBP29.83■■■□□ 2.37
HMGB3-205ENST00000455596 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.83■■■□□ 2.37
HMGB3-205ENST00000455596 USP35Q9P2H5 1018 aa29.83■■■□□ 2.37
HMGB3-205ENST00000455596 EDC4Q6P2E9 1401 aaKnown RBP29.82■■■□□ 2.36
HMGB3-205ENST00000455596 EP400Q96L91 3159 aa29.82■■■□□ 2.36
HMGB3-205ENST00000455596 A0A1W2PP64 1363 aa29.81■■■□□ 2.36
HMGB3-205ENST00000455596 CCER1Q8TC90 406 aaPredicted RBP29.81■■■□□ 2.36
HMGB3-205ENST00000455596 NFAT5O94916 1531 aa29.81■■■□□ 2.36
HMGB3-205ENST00000455596 LTN1O94822 1766 aa29.8■■■□□ 2.36
HMGB3-205ENST00000455596 USP31Q70CQ4 1352 aa29.79■■■□□ 2.36
HMGB3-205ENST00000455596 TMF1P82094 1093 aa29.79■■■□□ 2.36
HMGB3-205ENST00000455596 BARGINQ6ZT62 677 aa29.79■■■□□ 2.36
HMGB3-205ENST00000455596 SOX12O15370 315 aa29.78■■■□□ 2.36
HMGB3-205ENST00000455596 RGPD1P0DJD0 1748 aa29.78■■■□□ 2.36
HMGB3-205ENST00000455596 SF3B2Q13435 895 aaKnown RBP29.77■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms