RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 NBPF8Q3BBV2 869 aa23.59■■□□□ 1.37
NCKIPSD-208ENST00000454134 CABP2Q9NPB3 220 aa23.59■■□□□ 1.37
NCKIPSD-208ENST00000454134 ROCK2O75116 1388 aaKnown RBP23.59■■□□□ 1.37
NCKIPSD-208ENST00000454134 PLCH1Q4KWH8 1693 aa23.58■■□□□ 1.37
NCKIPSD-208ENST00000454134 POLR3AO14802 1390 aaPredicted RBP23.57■■□□□ 1.36
NCKIPSD-208ENST00000454134 RALGAPBQ86X10 1494 aa23.56■■□□□ 1.36
NCKIPSD-208ENST00000454134 PLEKHG3A1L390 1219 aa23.56■■□□□ 1.36
NCKIPSD-208ENST00000454134 GLI3P10071 1580 aa23.56■■□□□ 1.36
NCKIPSD-208ENST00000454134 NUTM2GQ5VZR2 741 aa23.55■■□□□ 1.36
NCKIPSD-208ENST00000454134 NWD2Q9ULI1 1742 aa23.54■■□□□ 1.36
NCKIPSD-208ENST00000454134 PPIP5K1Q6PFW1 1433 aa23.54■■□□□ 1.36
NCKIPSD-208ENST00000454134 CRYBG1Q9Y4K1 1723 aa23.53■■□□□ 1.36
NCKIPSD-208ENST00000454134 CCDC9Q9Y3X0 531 aaKnown RBP23.53■■□□□ 1.36
NCKIPSD-208ENST00000454134 ATAD2Q6PL18 1390 aa23.52■■□□□ 1.36
NCKIPSD-208ENST00000454134 VPS72Q15906 364 aa23.52■■□□□ 1.36
NCKIPSD-208ENST00000454134 BTG4Q9NY30 223 aa23.51■■□□□ 1.35
NCKIPSD-208ENST00000454134 TONSLQ96HA7 1378 aa23.51■■□□□ 1.35
NCKIPSD-208ENST00000454134 CABP1Q9NZU7 370 aa23.49■■□□□ 1.35
NCKIPSD-208ENST00000454134 EVC2Q86UK5 1308 aa23.49■■□□□ 1.35
NCKIPSD-208ENST00000454134 COL14A1Q05707 1796 aaKnown RBP23.49■■□□□ 1.35
NCKIPSD-208ENST00000454134 NRAPQ86VF7 1730 aa23.48■■□□□ 1.35
NCKIPSD-208ENST00000454134 PRDM11Q9NQV5 511 aa23.48■■□□□ 1.35
NCKIPSD-208ENST00000454134 ABTB2Q8N961 1025 aa23.47■■□□□ 1.35
NCKIPSD-208ENST00000454134 PHRF1Q9P1Y6 1649 aaKnown RBP23.47■■□□□ 1.35
NCKIPSD-208ENST00000454134 KIAA0232Q92628 1395 aa23.46■■□□□ 1.35
NCKIPSD-208ENST00000454134 ZC3H6P61129 1189 aaKnown RBP23.45■■□□□ 1.34
NCKIPSD-208ENST00000454134 CHRNA2Q15822 529 aa23.45■■□□□ 1.34
NCKIPSD-208ENST00000454134 SEPT12Q8IYM1 358 aa23.45■■□□□ 1.34
NCKIPSD-208ENST00000454134 CARD11Q9BXL7 1154 aa23.45■■□□□ 1.34
NCKIPSD-208ENST00000454134 BRWD3Q6RI45 1802 aa23.43■■□□□ 1.34
NCKIPSD-208ENST00000454134 USP6P35125 1406 aa23.42■■□□□ 1.34
NCKIPSD-208ENST00000454134 A0A0G2JS52 829 aa23.4■■□□□ 1.34
NCKIPSD-208ENST00000454134 ONECUT3O60422 494 aaPredicted RBP23.4■■□□□ 1.34
NCKIPSD-208ENST00000454134 MYT1Q01538 1121 aa23.4■■□□□ 1.34
NCKIPSD-208ENST00000454134 FAM98CQ17RN3 349 aaKnown RBP23.4■■□□□ 1.34
NCKIPSD-208ENST00000454134 EP400Q96L91 3159 aa23.4■■□□□ 1.34
NCKIPSD-208ENST00000454134 NRKQ7Z2Y5 1582 aa23.4■■□□□ 1.34
NCKIPSD-208ENST00000454134 USP19O94966 1318 aa23.39■■□□□ 1.34
NCKIPSD-208ENST00000454134 NLRP13Q86W25 1043 aa23.39■■□□□ 1.33
NCKIPSD-208ENST00000454134 STRN4Q9NRL3 753 aa23.38■■□□□ 1.33
NCKIPSD-208ENST00000454134 SPATA31A5Q5VU36 1347 aa23.37■■□□□ 1.33
NCKIPSD-208ENST00000454134 SPATA31A7Q8IWB4 1347 aa23.37■■□□□ 1.33
NCKIPSD-208ENST00000454134 BRD4O60885 1362 aaPredicted RBP23.37■■□□□ 1.33
NCKIPSD-208ENST00000454134 SSH2Q76I76 1423 aa23.35■■□□□ 1.33
NCKIPSD-208ENST00000454134 GCP02774 474 aa23.35■■□□□ 1.33
NCKIPSD-208ENST00000454134 NLRP6P59044 892 aa23.35■■□□□ 1.33
NCKIPSD-208ENST00000454134 KRT27Q7Z3Y8 459 aa23.35■■□□□ 1.33
NCKIPSD-208ENST00000454134 SBNO2Q9Y2G9 1366 aa23.35■■□□□ 1.33
NCKIPSD-208ENST00000454134 CPDO75976 1380 aa23.33■■□□□ 1.33
NCKIPSD-208ENST00000454134 PIK3C2AO00443 1686 aa23.32■■□□□ 1.32
NCKIPSD-208ENST00000454134 CCDC125Q86Z20 511 aa23.32■■□□□ 1.32
NCKIPSD-208ENST00000454134 AKAP12Q02952 1782 aa23.32■■□□□ 1.32
NCKIPSD-208ENST00000454134 CAMTA1Q9Y6Y1 1673 aa23.32■■□□□ 1.32
NCKIPSD-208ENST00000454134 ZBTB7CA1YPR0 619 aa23.31■■□□□ 1.32
NCKIPSD-208ENST00000454134 EVA1CP58658 441 aa23.31■■□□□ 1.32
NCKIPSD-208ENST00000454134 ZNF692Q9BU19 519 aaPredicted RBP23.31■■□□□ 1.32
NCKIPSD-208ENST00000454134 SPATA31A1Q5TZJ5 1347 aa23.31■■□□□ 1.32
NCKIPSD-208ENST00000454134 TTC21BQ7Z4L5 1316 aa23.31■■□□□ 1.32
NCKIPSD-208ENST00000454134 LMO7Q8WWI1 1683 aa23.29■■□□□ 1.32
NCKIPSD-208ENST00000454134 CPSF1Q10570 1443 aaKnown RBP23.29■■□□□ 1.32
NCKIPSD-208ENST00000454134 USP35Q9P2H5 1018 aa23.29■■□□□ 1.32
NCKIPSD-208ENST00000454134 KTN1Q86UP2 1357 aaKnown RBP23.28■■□□□ 1.32
NCKIPSD-208ENST00000454134 BLMP54132 1417 aaPredicted RBP23.28■■□□□ 1.32
NCKIPSD-208ENST00000454134 LARP1Q6PKG0 1096 aaKnown RBP23.28■■□□□ 1.32
NCKIPSD-208ENST00000454134 PCGF6Q9BYE7 350 aa23.28■■□□□ 1.32
NCKIPSD-208ENST00000454134 SLIT3O75094 1523 aa23.28■■□□□ 1.32
NCKIPSD-208ENST00000454134 FAM182BQ5T319 152 aa23.27■■□□□ 1.32
NCKIPSD-208ENST00000454134 TMC1Q8TDI8 760 aa23.27■■□□□ 1.32
NCKIPSD-208ENST00000454134 THSD7AQ9UPZ6 1657 aa23.27■■□□□ 1.32
NCKIPSD-208ENST00000454134 ST20-MTHFSA0A0A6YYL1 179 aa23.25■■□□□ 1.31
NCKIPSD-208ENST00000454134 SOX12O15370 315 aa23.25■■□□□ 1.31
NCKIPSD-208ENST00000454134 TTC21AQ8NDW8 1320 aa23.25■■□□□ 1.31
NCKIPSD-208ENST00000454134 DEFB132Q7Z7B7 95 aa23.24■■□□□ 1.31
NCKIPSD-208ENST00000454134 SLC12A5Q9H2X9 1139 aa23.24■■□□□ 1.31
NCKIPSD-208ENST00000454134 MON2Q7Z3U7 1717 aa23.24■■□□□ 1.31
NCKIPSD-208ENST00000454134 CD163L1Q9NR16 1453 aa23.24■■□□□ 1.31
NCKIPSD-208ENST00000454134 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.23■■□□□ 1.31
NCKIPSD-208ENST00000454134 TESK2Q96S53 571 aa23.23■■□□□ 1.31
NCKIPSD-208ENST00000454134 COL5A2P05997 1499 aaPredicted RBP23.23■■□□□ 1.31
NCKIPSD-208ENST00000454134 SF3B2Q13435 895 aaKnown RBP23.22■■□□□ 1.31
NCKIPSD-208ENST00000454134 ZRANB1Q9UGI0 708 aa23.22■■□□□ 1.31
NCKIPSD-208ENST00000454134 AATKQ6ZMQ8 1374 aa23.21■■□□□ 1.31
NCKIPSD-208ENST00000454134 BARGINQ6ZT62 677 aa23.19■■□□□ 1.3
NCKIPSD-208ENST00000454134 HDGFL2Q7Z4V5 671 aaPredicted RBP23.19■■□□□ 1.3
NCKIPSD-208ENST00000454134 TCP11L2Q8N4U5 519 aa23.19■■□□□ 1.3
NCKIPSD-208ENST00000454134 NME9Q86XW9 330 aa23.18■■□□□ 1.3
NCKIPSD-208ENST00000454134 KCNH5Q8NCM2 988 aa23.18■■□□□ 1.3
NCKIPSD-208ENST00000454134 AXIN2Q9Y2T1 843 aa23.18■■□□□ 1.3
NCKIPSD-208ENST00000454134 COL18A1P39060 1754 aa23.18■■□□□ 1.3
NCKIPSD-208ENST00000454134 ARHGEF25Q86VW2 580 aa23.17■■□□□ 1.3
NCKIPSD-208ENST00000454134 PUS7Q96PZ0 661 aaKnown RBP23.17■■□□□ 1.3
NCKIPSD-208ENST00000454134 USP47Q96K76 1375 aa23.16■■□□□ 1.3
NCKIPSD-208ENST00000454134 TERF2IPQ9NYB0 399 aa23.16■■□□□ 1.3
NCKIPSD-208ENST00000454134 CRB1P82279 1406 aa23.16■■□□□ 1.3
NCKIPSD-208ENST00000454134 A0A1W2PP64 1363 aa23.15■■□□□ 1.3
NCKIPSD-208ENST00000454134 NFAT5O94916 1531 aa23.15■■□□□ 1.3
NCKIPSD-208ENST00000454134 THRAP3Q9Y2W1 955 aaKnown RBP23.14■■□□□ 1.29
NCKIPSD-208ENST00000454134 USP31Q70CQ4 1352 aa23.14■■□□□ 1.29
NCKIPSD-208ENST00000454134 PDE3BQ13370 1112 aa23.13■■□□□ 1.29
NCKIPSD-208ENST00000454134 TOM1L2Q6ZVM7 507 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms