RNA–Protein interactions for RNA: ENST00000453341.1

TNFRSF25-208, Transcript of TNF receptor superfamily member 25, human

TSL 1 (best)

Gene TNFRSF25, Length 798 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF25-208	ENST00000453341	R3HDM1	Q15032	1099 aa	Known RBP	32.4	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	POGK	Q9P215	609 aa		32.4	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	DISP2	A7MBM2	1401 aa		32.39	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	PRR36	Q9H6K5	1346 aa		32.38	■■■□□ 2.77
TNFRSF25-208	ENST00000453341	ACIN1	Q9UKV3	1341 aa	Known RBP	32.37	■■■□□ 2.77
TNFRSF25-208	ENST00000453341	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.37	■■■□□ 2.77
TNFRSF25-208	ENST00000453341	ADGRB1	O14514	1584 aa		32.36	■■■□□ 2.77
TNFRSF25-208	ENST00000453341	GPRASP1	Q5JY77	1395 aa		32.36	■■■□□ 2.77
TNFRSF25-208	ENST00000453341	EZH2	Q15910	746 aa	Known RBP	32.33	■■■□□ 2.77
TNFRSF25-208	ENST00000453341	TULP4	Q9NRJ4	1543 aa		32.32	■■■□□ 2.76
TNFRSF25-208	ENST00000453341	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.31	■■■□□ 2.76
TNFRSF25-208	ENST00000453341	TRAK1	Q9UPV9	953 aa		32.3	■■■□□ 2.76
TNFRSF25-208	ENST00000453341	PRDM11	Q9NQV5	511 aa		32.28	■■■□□ 2.76
TNFRSF25-208	ENST00000453341	CAMKK2	Q96RR4	588 aa		32.27	■■■□□ 2.76
TNFRSF25-208	ENST00000453341	EIF3A	Q14152	1382 aa	Known RBP	32.27	■■■□□ 2.76
TNFRSF25-208	ENST00000453341	SPATA31A1	Q5TZJ5	1347 aa		32.26	■■■□□ 2.76
TNFRSF25-208	ENST00000453341	WASL	O00401	505 aa	Predicted RBP	32.25	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	PAK3	O75914	559 aa	Predicted RBP	32.25	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	TRIM37	O94972	964 aa		32.25	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	KIAA0232	Q92628	1395 aa		32.23	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	NGDN	Q8NEJ9	315 aa	Known RBP	32.23	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	CHRNA2	Q15822	529 aa		32.21	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.21	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	FAM196A	Q6ZSG2	479 aa		32.2	■■■□□ 2.75
TNFRSF25-208	ENST00000453341	STRN4	Q9NRL3	753 aa		32.18	■■■□□ 2.74
TNFRSF25-208	ENST00000453341	APBA3	O96018	575 aa		32.17	■■■□□ 2.74
TNFRSF25-208	ENST00000453341	RREB1	Q92766	1687 aa		32.17	■■■□□ 2.74
TNFRSF25-208	ENST00000453341	ATP7B	P35670	1465 aa		32.16	■■■□□ 2.74
TNFRSF25-208	ENST00000453341	PARD3	Q8TEW0	1356 aa		32.15	■■■□□ 2.74
TNFRSF25-208	ENST00000453341	ITSN1	Q15811	1721 aa		32.14	■■■□□ 2.74
TNFRSF25-208	ENST00000453341	NUP188	Q5SRE5	1749 aa		32.14	■■■□□ 2.74
TNFRSF25-208	ENST00000453341	ZC3H6	P61129	1189 aa	Known RBP	32.13	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	USP35	Q9P2H5	1018 aa		32.12	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	KDM2A	Q9Y2K7	1162 aa		32.11	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.11	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	NUTM2G	Q5VZR2	741 aa		32.1	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	NUDT16	Q96DE0	195 aa	Known RBP	32.1	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	SSH2	Q76I76	1423 aa		32.09	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	BARGIN	Q6ZT62	677 aa		32.09	■■■□□ 2.73
TNFRSF25-208	ENST00000453341	DCAF11	Q8TEB1	546 aa		32.07	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	CAMTA1	Q9Y6Y1	1673 aa		32.06	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	PDE3B	Q13370	1112 aa		32.05	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	NRK	Q7Z2Y5	1582 aa		32.05	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	TOPAZ1	Q8N9V7	1692 aa		32.03	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	LARP1	Q6PKG0	1096 aa	Known RBP	32.03	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	POLR3A	O14802	1390 aa	Predicted RBP	32.03	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	LMO7	Q8WWI1	1683 aa		32.02	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	YY1	P25490	414 aa		32.02	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	EVA1C	P58658	441 aa		32.02	■■■□□ 2.72
TNFRSF25-208	ENST00000453341	RAB3GAP2	Q9H2M9	1393 aa		32	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	CDK19	Q9BWU1	502 aa		32	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	ACE	P12821	1306 aa		32	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	NBPF8	Q3BBV2	869 aa		31.99	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	NBPF14	Q5TI25	921 aa		31.99	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	TCP11L2	Q8N4U5	519 aa		31.99	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	CPD	O75976	1380 aa		31.97	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	PARP4	Q9UKK3	1724 aa	Known RBP	31.95	■■■□□ 2.71
TNFRSF25-208	ENST00000453341	USP19	O94966	1318 aa		31.95	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	STAC3	Q96MF2	364 aa		31.93	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	SPON1	Q9HCB6	807 aa		31.93	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	PLEKHG3	A1L390	1219 aa		31.92	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	ABTB2	Q8N961	1025 aa		31.92	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	CCDC61	Q9Y6R9	512 aa		31.92	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	THRAP3	Q9Y2W1	955 aa	Known RBP	31.91	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	PEAK1	Q9H792	1746 aa		31.9	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	KCNQ2	O43526	872 aa		31.9	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	PPP1R1B	Q9UD71	204 aa	Predicted RBP	31.9	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	COL5A2	P05997	1499 aa	Predicted RBP	31.9	■■■□□ 2.7
TNFRSF25-208	ENST00000453341	NINL	Q9Y2I6	1382 aa		31.87	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	GC	P02774	474 aa		31.86	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	SBF2	Q86WG5	1849 aa		31.85	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	RGPD3	A6NKT7	1758 aa	Predicted RBP	31.85	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	RGPD4	Q7Z3J3	1758 aa		31.85	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	OVOS2	A0A0G2JMS6	1433 aa		31.83	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	OVOS2	A0A0J9YW53	1432 aa		31.83	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	OVOS2	Q6IE36	1432 aa		31.83	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	CRB1	P82279	1406 aa		31.83	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	LRRC37A3	O60309	1634 aa		31.82	■■■□□ 2.69
TNFRSF25-208	ENST00000453341	NLRP13	Q86W25	1043 aa		31.82	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	ANO8	Q9HCE9	1232 aa	Predicted RBP	31.82	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	CASZ1	Q86V15	1759 aa		31.81	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	C11orf95	C9JLR9	678 aa	Predicted RBP	31.79	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	PPIP5K1	Q6PFW1	1433 aa		31.79	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	PTF1A	Q7RTS3	328 aa		31.79	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	PLSCR1	O15162	318 aa		31.78	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	UTRN	P46939	3433 aa		31.77	■■■□□ 2.68
TNFRSF25-208	ENST00000453341	KIAA1210	Q9ULL0	1709 aa		31.76	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	PDGFD	Q9GZP0	370 aa	Predicted RBP	31.76	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	DCAF8L1	A6NGE4	600 aa		31.75	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	ZBTB7C	A1YPR0	619 aa		31.74	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	AATK	Q6ZMQ8	1374 aa		31.73	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	SLIT3	O75094	1523 aa		31.73	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	COL18A1	P39060	1754 aa		31.72	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	SRPK2	P78362	688 aa	Known RBP	31.72	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	DDB1	Q16531	1140 aa		31.72	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	NBPF1	Q3BBV0	1214 aa		31.72	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	PROM2	Q8N271	834 aa		31.72	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	CABP2	Q9NPB3	220 aa		31.72	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	WNK3	Q9BYP7	1800 aa		31.72	■■■□□ 2.67
TNFRSF25-208	ENST00000453341	BCL11B	Q9C0K0	894 aa	Predicted RBP	31.71	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms