RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 PLEKHG3A1L390 1219 aa21.83■■□□□ 1.09
CHD3-205ENST00000449744 CABP2Q9NPB3 220 aa21.83■■□□□ 1.09
CHD3-205ENST00000449744 NBPF8Q3BBV2 869 aa21.82■■□□□ 1.08
CHD3-205ENST00000449744 POLR3AO14802 1390 aaPredicted RBP21.82■■□□□ 1.08
CHD3-205ENST00000449744 TONSLQ96HA7 1378 aa21.82■■□□□ 1.08
CHD3-205ENST00000449744 FAM83GA6ND36 823 aa21.81■■□□□ 1.08
CHD3-205ENST00000449744 CCDC9Q9Y3X0 531 aaKnown RBP21.81■■□□□ 1.08
CHD3-205ENST00000449744 ATAD2Q6PL18 1390 aa21.81■■□□□ 1.08
CHD3-205ENST00000449744 PLCH1Q4KWH8 1693 aa21.81■■□□□ 1.08
CHD3-205ENST00000449744 NWD2Q9ULI1 1742 aa21.8■■□□□ 1.08
CHD3-205ENST00000449744 PPIP5K1Q6PFW1 1433 aa21.8■■□□□ 1.08
CHD3-205ENST00000449744 RALGAPBQ86X10 1494 aa21.79■■□□□ 1.08
CHD3-205ENST00000449744 VPS72Q15906 364 aa21.79■■□□□ 1.08
CHD3-205ENST00000449744 EVC2Q86UK5 1308 aa21.79■■□□□ 1.08
CHD3-205ENST00000449744 GLI3P10071 1580 aa21.76■■□□□ 1.07
CHD3-205ENST00000449744 NUTM2GQ5VZR2 741 aa21.76■■□□□ 1.07
CHD3-205ENST00000449744 PRDM11Q9NQV5 511 aa21.76■■□□□ 1.07
CHD3-205ENST00000449744 BTG4Q9NY30 223 aa21.76■■□□□ 1.07
CHD3-205ENST00000449744 COL14A1Q05707 1796 aaKnown RBP21.75■■□□□ 1.07
CHD3-205ENST00000449744 ABTB2Q8N961 1025 aa21.75■■□□□ 1.07
CHD3-205ENST00000449744 CABP1Q9NZU7 370 aa21.75■■□□□ 1.07
CHD3-205ENST00000449744 CARD11Q9BXL7 1154 aa21.74■■□□□ 1.07
CHD3-205ENST00000449744 CRYBG1Q9Y4K1 1723 aa21.74■■□□□ 1.07
CHD3-205ENST00000449744 SEPT12Q8IYM1 358 aa21.71■■□□□ 1.07
CHD3-205ENST00000449744 BRD4O60885 1362 aaPredicted RBP21.71■■□□□ 1.07
CHD3-205ENST00000449744 PHRF1Q9P1Y6 1649 aaKnown RBP21.7■■□□□ 1.06
CHD3-205ENST00000449744 A0A0G2JS52 829 aa21.7■■□□□ 1.06
CHD3-205ENST00000449744 ZC3H6P61129 1189 aaKnown RBP21.7■■□□□ 1.06
CHD3-205ENST00000449744 MYT1Q01538 1121 aa21.7■■□□□ 1.06
CHD3-205ENST00000449744 NLRP13Q86W25 1043 aa21.7■■□□□ 1.06
CHD3-205ENST00000449744 KIAA0232Q92628 1395 aa21.7■■□□□ 1.06
CHD3-205ENST00000449744 NRAPQ86VF7 1730 aa21.69■■□□□ 1.06
CHD3-205ENST00000449744 CHRNA2Q15822 529 aa21.68■■□□□ 1.06
CHD3-205ENST00000449744 USP6P35125 1406 aa21.68■■□□□ 1.06
CHD3-205ENST00000449744 ONECUT3O60422 494 aaPredicted RBP21.67■■□□□ 1.06
CHD3-205ENST00000449744 USP19O94966 1318 aa21.65■■□□□ 1.06
CHD3-205ENST00000449744 FAM98CQ17RN3 349 aaKnown RBP21.65■■□□□ 1.06
CHD3-205ENST00000449744 CCDC125Q86Z20 511 aa21.65■■□□□ 1.06
CHD3-205ENST00000449744 ZNF692Q9BU19 519 aaPredicted RBP21.65■■□□□ 1.06
CHD3-205ENST00000449744 STRN4Q9NRL3 753 aa21.65■■□□□ 1.06
CHD3-205ENST00000449744 SBNO2Q9Y2G9 1366 aa21.64■■□□□ 1.06
CHD3-205ENST00000449744 NLRP6P59044 892 aa21.64■■□□□ 1.05
CHD3-205ENST00000449744 SPATA31A5Q5VU36 1347 aa21.63■■□□□ 1.05
CHD3-205ENST00000449744 SPATA31A7Q8IWB4 1347 aa21.63■■□□□ 1.05
CHD3-205ENST00000449744 NRKQ7Z2Y5 1582 aa21.63■■□□□ 1.05
CHD3-205ENST00000449744 GCP02774 474 aa21.63■■□□□ 1.05
CHD3-205ENST00000449744 EVA1CP58658 441 aa21.63■■□□□ 1.05
CHD3-205ENST00000449744 KRT27Q7Z3Y8 459 aa21.63■■□□□ 1.05
CHD3-205ENST00000449744 BRWD3Q6RI45 1802 aa21.63■■□□□ 1.05
CHD3-205ENST00000449744 CPDO75976 1380 aa21.61■■□□□ 1.05
CHD3-205ENST00000449744 SSH2Q76I76 1423 aa21.59■■□□□ 1.05
CHD3-205ENST00000449744 ZRANB1Q9UGI0 708 aa21.59■■□□□ 1.05
CHD3-205ENST00000449744 TTC21BQ7Z4L5 1316 aa21.58■■□□□ 1.05
CHD3-205ENST00000449744 ZBTB7CA1YPR0 619 aa21.58■■□□□ 1.05
CHD3-205ENST00000449744 SF3B2Q13435 895 aaKnown RBP21.58■■□□□ 1.05
CHD3-205ENST00000449744 KTN1Q86UP2 1357 aaKnown RBP21.58■■□□□ 1.04
CHD3-205ENST00000449744 SPATA31A1Q5TZJ5 1347 aa21.57■■□□□ 1.04
CHD3-205ENST00000449744 BLMP54132 1417 aaPredicted RBP21.57■■□□□ 1.04
CHD3-205ENST00000449744 TMC1Q8TDI8 760 aa21.57■■□□□ 1.04
CHD3-205ENST00000449744 TTC21AQ8NDW8 1320 aa21.56■■□□□ 1.04
CHD3-205ENST00000449744 AKAP12Q02952 1782 aa21.56■■□□□ 1.04
CHD3-205ENST00000449744 PCGF6Q9BYE7 350 aa21.56■■□□□ 1.04
CHD3-205ENST00000449744 USP35Q9P2H5 1018 aa21.56■■□□□ 1.04
CHD3-205ENST00000449744 CPSF1Q10570 1443 aaKnown RBP21.55■■□□□ 1.04
CHD3-205ENST00000449744 PIK3C2AO00443 1686 aa21.55■■□□□ 1.04
CHD3-205ENST00000449744 CAMTA1Q9Y6Y1 1673 aa21.55■■□□□ 1.04
CHD3-205ENST00000449744 SLIT3O75094 1523 aa21.55■■□□□ 1.04
CHD3-205ENST00000449744 ST20-MTHFSA0A0A6YYL1 179 aa21.53■■□□□ 1.04
CHD3-205ENST00000449744 SLC24A1O60721 1099 aa21.53■■□□□ 1.04
CHD3-205ENST00000449744 LARP1Q6PKG0 1096 aaKnown RBP21.53■■□□□ 1.04
CHD3-205ENST00000449744 HDGFL2Q7Z4V5 671 aaPredicted RBP21.53■■□□□ 1.04
CHD3-205ENST00000449744 KCNH5Q8NCM2 988 aa21.53■■□□□ 1.04
CHD3-205ENST00000449744 LMO7Q8WWI1 1683 aa21.53■■□□□ 1.04
CHD3-205ENST00000449744 THSD7AQ9UPZ6 1657 aa21.51■■□□□ 1.03
CHD3-205ENST00000449744 PUS7Q96PZ0 661 aaKnown RBP21.51■■□□□ 1.03
CHD3-205ENST00000449744 SLC12A5Q9H2X9 1139 aa21.51■■□□□ 1.03
CHD3-205ENST00000449744 AATKQ6ZMQ8 1374 aa21.5■■□□□ 1.03
CHD3-205ENST00000449744 SOX12O15370 315 aa21.5■■□□□ 1.03
CHD3-205ENST00000449744 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.5■■□□□ 1.03
CHD3-205ENST00000449744 TCP11L2Q8N4U5 519 aa21.5■■□□□ 1.03
CHD3-205ENST00000449744 MON2Q7Z3U7 1717 aa21.49■■□□□ 1.03
CHD3-205ENST00000449744 BARGINQ6ZT62 677 aa21.49■■□□□ 1.03
CHD3-205ENST00000449744 TERF2IPQ9NYB0 399 aa21.49■■□□□ 1.03
CHD3-205ENST00000449744 COL5A2P05997 1499 aaPredicted RBP21.49■■□□□ 1.03
CHD3-205ENST00000449744 CLSPNQ9HAW4 1339 aa21.49■■□□□ 1.03
CHD3-205ENST00000449744 FAM182BQ5T319 152 aa21.48■■□□□ 1.03
CHD3-205ENST00000449744 DEFB132Q7Z7B7 95 aa21.48■■□□□ 1.03
CHD3-205ENST00000449744 TESK2Q96S53 571 aa21.48■■□□□ 1.03
CHD3-205ENST00000449744 TIMELESSQ9UNS1 1208 aa21.48■■□□□ 1.03
CHD3-205ENST00000449744 THRAP3Q9Y2W1 955 aaKnown RBP21.48■■□□□ 1.03
CHD3-205ENST00000449744 CD163L1Q9NR16 1453 aa21.46■■□□□ 1.03
CHD3-205ENST00000449744 PDE3BQ13370 1112 aa21.46■■□□□ 1.03
CHD3-205ENST00000449744 CRB1P82279 1406 aa21.46■■□□□ 1.03
CHD3-205ENST00000449744 BAG6P46379 1132 aa21.45■■□□□ 1.02
CHD3-205ENST00000449744 TOM1L2Q6ZVM7 507 aa21.45■■□□□ 1.02
CHD3-205ENST00000449744 ARHGEF25Q86VW2 580 aa21.45■■□□□ 1.02
CHD3-205ENST00000449744 USP47Q96K76 1375 aa21.45■■□□□ 1.02
CHD3-205ENST00000449744 NME9Q86XW9 330 aa21.44■■□□□ 1.02
CHD3-205ENST00000449744 USP31Q70CQ4 1352 aa21.44■■□□□ 1.02
CHD3-205ENST00000449744 NINLQ9Y2I6 1382 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms