RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 PPIP5K1Q6PFW1 1433 aa28.35■■■□□ 2.13
SHROOM1-204ENST00000440118 UPF1Q92900 1129 aaKnown RBP eCLIP28.35■■■□□ 2.13
SHROOM1-204ENST00000440118 CRYBG1Q9Y4K1 1723 aa28.35■■■□□ 2.13
SHROOM1-204ENST00000440118 GJD4Q96KN9 370 aaPredicted RBP28.34■■■□□ 2.13
SHROOM1-204ENST00000440118 ACEP12821 1306 aa28.34■■■□□ 2.13
SHROOM1-204ENST00000440118 COL14A1Q05707 1796 aaKnown RBP28.33■■■□□ 2.13
SHROOM1-204ENST00000440118 CABP2Q9NPB3 220 aa28.33■■■□□ 2.13
SHROOM1-204ENST00000440118 CCDC9Q9Y3X0 531 aaKnown RBP28.33■■■□□ 2.13
SHROOM1-204ENST00000440118 POLR3AO14802 1390 aaPredicted RBP28.33■■■□□ 2.13
SHROOM1-204ENST00000440118 ATAD2Q6PL18 1390 aa28.33■■■□□ 2.13
SHROOM1-204ENST00000440118 PHRF1Q9P1Y6 1649 aaKnown RBP28.32■■■□□ 2.12
SHROOM1-204ENST00000440118 EVC2Q86UK5 1308 aa28.31■■■□□ 2.12
SHROOM1-204ENST00000440118 RALGAPBQ86X10 1494 aa28.31■■■□□ 2.12
SHROOM1-204ENST00000440118 GLI3P10071 1580 aa28.3■■■□□ 2.12
SHROOM1-204ENST00000440118 PLEKHG3A1L390 1219 aa28.29■■■□□ 2.12
SHROOM1-204ENST00000440118 NBPF8Q3BBV2 869 aa28.29■■■□□ 2.12
SHROOM1-204ENST00000440118 NRAPQ86VF7 1730 aa28.28■■■□□ 2.12
SHROOM1-204ENST00000440118 FAM83GA6ND36 823 aa28.26■■■□□ 2.11
SHROOM1-204ENST00000440118 NUTM2GQ5VZR2 741 aa28.26■■■□□ 2.11
SHROOM1-204ENST00000440118 PRDM11Q9NQV5 511 aa28.26■■■□□ 2.11
SHROOM1-204ENST00000440118 VPS72Q15906 364 aa28.25■■■□□ 2.11
SHROOM1-204ENST00000440118 CARD11Q9BXL7 1154 aa28.25■■■□□ 2.11
SHROOM1-204ENST00000440118 BTG4Q9NY30 223 aa28.24■■■□□ 2.11
SHROOM1-204ENST00000440118 ABTB2Q8N961 1025 aa28.23■■■□□ 2.11
SHROOM1-204ENST00000440118 A0A0G2JS52 829 aa28.22■■■□□ 2.11
SHROOM1-204ENST00000440118 MYT1Q01538 1121 aa28.22■■■□□ 2.11
SHROOM1-204ENST00000440118 BRWD3Q6RI45 1802 aa28.21■■■□□ 2.11
SHROOM1-204ENST00000440118 CABP1Q9NZU7 370 aa28.2■■■□□ 2.1
SHROOM1-204ENST00000440118 NRKQ7Z2Y5 1582 aa28.2■■■□□ 2.1
SHROOM1-204ENST00000440118 KIAA0232Q92628 1395 aa28.19■■■□□ 2.1
SHROOM1-204ENST00000440118 BRD4O60885 1362 aaPredicted RBP28.17■■■□□ 2.1
SHROOM1-204ENST00000440118 USP6P35125 1406 aa28.17■■■□□ 2.1
SHROOM1-204ENST00000440118 ZC3H6P61129 1189 aaKnown RBP28.16■■■□□ 2.1
SHROOM1-204ENST00000440118 AKAP12Q02952 1782 aa28.16■■■□□ 2.1
SHROOM1-204ENST00000440118 NLRP13Q86W25 1043 aa28.15■■■□□ 2.1
SHROOM1-204ENST00000440118 CHRNA2Q15822 529 aa28.14■■■□□ 2.1
SHROOM1-204ENST00000440118 SEPT12Q8IYM1 358 aa28.14■■■□□ 2.1
SHROOM1-204ENST00000440118 EP400Q96L91 3159 aa28.13■■■□□ 2.09
SHROOM1-204ENST00000440118 SBNO2Q9Y2G9 1366 aa28.12■■■□□ 2.09
SHROOM1-204ENST00000440118 STRN4Q9NRL3 753 aa28.11■■■□□ 2.09
SHROOM1-204ENST00000440118 FAM98CQ17RN3 349 aaKnown RBP28.1■■■□□ 2.09
SHROOM1-204ENST00000440118 USP19O94966 1318 aa28.1■■■□□ 2.09
SHROOM1-204ENST00000440118 PIK3C2AO00443 1686 aa28.1■■■□□ 2.09
SHROOM1-204ENST00000440118 NLRP6P59044 892 aa28.08■■■□□ 2.09
SHROOM1-204ENST00000440118 ZBTB7CA1YPR0 619 aa28.07■■■□□ 2.08
SHROOM1-204ENST00000440118 EVA1CP58658 441 aa28.06■■■□□ 2.08
SHROOM1-204ENST00000440118 SPATA31A5Q5VU36 1347 aa28.06■■■□□ 2.08
SHROOM1-204ENST00000440118 SPATA31A7Q8IWB4 1347 aa28.06■■■□□ 2.08
SHROOM1-204ENST00000440118 MON2Q7Z3U7 1717 aa28.06■■■□□ 2.08
SHROOM1-204ENST00000440118 CPDO75976 1380 aa28.05■■■□□ 2.08
SHROOM1-204ENST00000440118 KRT27Q7Z3Y8 459 aa28.05■■■□□ 2.08
SHROOM1-204ENST00000440118 ZNF692Q9BU19 519 aaPredicted RBP28.05■■■□□ 2.08
SHROOM1-204ENST00000440118 PCGF6Q9BYE7 350 aa28.05■■■□□ 2.08
SHROOM1-204ENST00000440118 KTN1Q86UP2 1357 aaKnown RBP28.04■■■□□ 2.08
SHROOM1-204ENST00000440118 GCP02774 474 aa28.04■■■□□ 2.08
SHROOM1-204ENST00000440118 CCDC125Q86Z20 511 aa28.04■■■□□ 2.08
SHROOM1-204ENST00000440118 ONECUT3O60422 494 aaPredicted RBP28.03■■■□□ 2.08
SHROOM1-204ENST00000440118 TMC1Q8TDI8 760 aa28.03■■■□□ 2.08
SHROOM1-204ENST00000440118 LMO7Q8WWI1 1683 aa28.03■■■□□ 2.08
SHROOM1-204ENST00000440118 SLIT3O75094 1523 aa28.02■■■□□ 2.08
SHROOM1-204ENST00000440118 SF3B2Q13435 895 aaKnown RBP28.01■■■□□ 2.07
SHROOM1-204ENST00000440118 BLMP54132 1417 aaPredicted RBP28.01■■■□□ 2.07
SHROOM1-204ENST00000440118 SSH2Q76I76 1423 aa28.01■■■□□ 2.07
SHROOM1-204ENST00000440118 THSD7AQ9UPZ6 1657 aa28■■■□□ 2.07
SHROOM1-204ENST00000440118 TTC21BQ7Z4L5 1316 aa28■■■□□ 2.07
SHROOM1-204ENST00000440118 USP35Q9P2H5 1018 aa28■■■□□ 2.07
SHROOM1-204ENST00000440118 CAMTA1Q9Y6Y1 1673 aa28■■■□□ 2.07
SHROOM1-204ENST00000440118 SPATA31A1Q5TZJ5 1347 aa27.99■■■□□ 2.07
SHROOM1-204ENST00000440118 TTC21AQ8NDW8 1320 aa27.99■■■□□ 2.07
SHROOM1-204ENST00000440118 CPSF1Q10570 1443 aaKnown RBP27.98■■■□□ 2.07
SHROOM1-204ENST00000440118 SOX12O15370 315 aa27.96■■■□□ 2.07
SHROOM1-204ENST00000440118 HDGFL2Q7Z4V5 671 aaPredicted RBP27.96■■■□□ 2.07
SHROOM1-204ENST00000440118 ST20-MTHFSA0A0A6YYL1 179 aa27.94■■■□□ 2.06
SHROOM1-204ENST00000440118 COL5A2P05997 1499 aaPredicted RBP27.94■■■□□ 2.06
SHROOM1-204ENST00000440118 LARP1Q6PKG0 1096 aaKnown RBP27.93■■■□□ 2.06
SHROOM1-204ENST00000440118 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.93■■■□□ 2.06
SHROOM1-204ENST00000440118 KCNH5Q8NCM2 988 aa27.93■■■□□ 2.06
SHROOM1-204ENST00000440118 RGPD1P0DJD0 1748 aa27.92■■■□□ 2.06
SHROOM1-204ENST00000440118 CLSPNQ9HAW4 1339 aa27.92■■■□□ 2.06
SHROOM1-204ENST00000440118 USP47Q96K76 1375 aa27.91■■■□□ 2.06
SHROOM1-204ENST00000440118 SLC24A1O60721 1099 aa27.91■■■□□ 2.06
SHROOM1-204ENST00000440118 TERF2IPQ9NYB0 399 aa27.91■■■□□ 2.06
SHROOM1-204ENST00000440118 AATKQ6ZMQ8 1374 aa27.9■■■□□ 2.06
SHROOM1-204ENST00000440118 CD163L1Q9NR16 1453 aa27.89■■■□□ 2.06
SHROOM1-204ENST00000440118 TCP11L2Q8N4U5 519 aa27.89■■■□□ 2.06
SHROOM1-204ENST00000440118 SLC12A5Q9H2X9 1139 aa27.89■■■□□ 2.06
SHROOM1-204ENST00000440118 RGPD5Q99666 1765 aa27.88■■■□□ 2.05
SHROOM1-204ENST00000440118 NINLQ9Y2I6 1382 aa27.87■■■□□ 2.05
SHROOM1-204ENST00000440118 CRB1P82279 1406 aa27.87■■■□□ 2.05
SHROOM1-204ENST00000440118 EDC4Q6P2E9 1401 aaKnown RBP27.87■■■□□ 2.05
SHROOM1-204ENST00000440118 COL18A1P39060 1754 aa27.87■■■□□ 2.05
SHROOM1-204ENST00000440118 FAM182BQ5T319 152 aa27.87■■■□□ 2.05
SHROOM1-204ENST00000440118 USP54Q70EL1 1684 aa27.87■■■□□ 2.05
SHROOM1-204ENST00000440118 A0A1W2PP64 1363 aa27.86■■■□□ 2.05
SHROOM1-204ENST00000440118 BARGINQ6ZT62 677 aa27.86■■■□□ 2.05
SHROOM1-204ENST00000440118 PUS7Q96PZ0 661 aaKnown RBP27.86■■■□□ 2.05
SHROOM1-204ENST00000440118 TESK2Q96S53 571 aa27.86■■■□□ 2.05
SHROOM1-204ENST00000440118 ZRANB1Q9UGI0 708 aa27.86■■■□□ 2.05
SHROOM1-204ENST00000440118 PDE3BQ13370 1112 aa27.85■■■□□ 2.05
SHROOM1-204ENST00000440118 DEFB132Q7Z7B7 95 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms