RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 FNBP4Q8N3X1 1017 aaPredicted RBP33.47■■■□□ 2.95
VARS-217ENST00000440048 CABP1Q9NZU7 370 aa33.47■■■□□ 2.95
VARS-217ENST00000440048 QTRT2Q9H974 415 aaKnown RBP33.45■■■□□ 2.95
VARS-217ENST00000440048 CDK12Q9NYV4 1490 aaPredicted RBP33.44■■■□□ 2.94
VARS-217ENST00000440048 USP21Q9UK80 565 aa33.44■■■□□ 2.94
VARS-217ENST00000440048 CRYBG1Q9Y4K1 1723 aa33.4■■■□□ 2.94
VARS-217ENST00000440048 ATAD2Q6PL18 1390 aa33.4■■■□□ 2.94
VARS-217ENST00000440048 ST20-MTHFSA0A0A6YYL1 179 aa33.4■■■□□ 2.94
VARS-217ENST00000440048 RBM6P78332 1123 aaKnown RBP33.4■■■□□ 2.94
VARS-217ENST00000440048 BCL9LQ86UU0 1499 aa33.37■■■□□ 2.93
VARS-217ENST00000440048 TESK2Q96S53 571 aa33.36■■■□□ 2.93
VARS-217ENST00000440048 USP6P35125 1406 aa33.36■■■□□ 2.93
VARS-217ENST00000440048 SLIT2O94813 1529 aa33.35■■■□□ 2.93
VARS-217ENST00000440048 NUTM2GQ5VZR2 741 aa33.35■■■□□ 2.93
VARS-217ENST00000440048 TRPC5Q9UL62 973 aaPredicted RBP33.35■■■□□ 2.93
VARS-217ENST00000440048 BRD4O60885 1362 aaPredicted RBP33.34■■■□□ 2.93
VARS-217ENST00000440048 USP47Q96K76 1375 aa33.34■■■□□ 2.93
VARS-217ENST00000440048 ATRNO75882 1429 aa33.34■■■□□ 2.93
VARS-217ENST00000440048 ABTB2Q8N961 1025 aa33.33■■■□□ 2.93
VARS-217ENST00000440048 AKAP12Q02952 1782 aa33.33■■■□□ 2.93
VARS-217ENST00000440048 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.32■■■□□ 2.92
VARS-217ENST00000440048 PLCH1Q4KWH8 1693 aa33.31■■■□□ 2.92
VARS-217ENST00000440048 PHRF1Q9P1Y6 1649 aaKnown RBP33.31■■■□□ 2.92
VARS-217ENST00000440048 FAM83GA6ND36 823 aa33.3■■■□□ 2.92
VARS-217ENST00000440048 SSH2Q76I76 1423 aa33.29■■■□□ 2.92
VARS-217ENST00000440048 UNC5CLQ8IV45 518 aa33.29■■■□□ 2.92
VARS-217ENST00000440048 ZNF692Q9BU19 519 aaPredicted RBP33.29■■■□□ 2.92
VARS-217ENST00000440048 NWD2Q9ULI1 1742 aa33.28■■■□□ 2.92
VARS-217ENST00000440048 PUS7Q96PZ0 661 aaKnown RBP33.28■■■□□ 2.92
VARS-217ENST00000440048 CPSF1Q10570 1443 aaKnown RBP33.27■■■□□ 2.92
VARS-217ENST00000440048 SLC24A1O60721 1099 aa33.26■■■□□ 2.91
VARS-217ENST00000440048 COL14A1Q05707 1796 aaKnown RBP33.24■■■□□ 2.91
VARS-217ENST00000440048 TMC1Q8TDI8 760 aa33.24■■■□□ 2.91
VARS-217ENST00000440048 NLRP13Q86W25 1043 aa33.23■■■□□ 2.91
VARS-217ENST00000440048 USP19O94966 1318 aa33.23■■■□□ 2.91
VARS-217ENST00000440048 RGS12O14924 1447 aa33.22■■■□□ 2.91
VARS-217ENST00000440048 SLC12A5Q9H2X9 1139 aa33.22■■■□□ 2.91
VARS-217ENST00000440048 MON2Q7Z3U7 1717 aa33.22■■■□□ 2.91
VARS-217ENST00000440048 KTN1Q86UP2 1357 aaKnown RBP33.21■■■□□ 2.91
VARS-217ENST00000440048 PIK3C2AO00443 1686 aa33.21■■■□□ 2.91
VARS-217ENST00000440048 CD163L1Q9NR16 1453 aa33.21■■■□□ 2.91
VARS-217ENST00000440048 TTC21BQ7Z4L5 1316 aa33.21■■■□□ 2.91
VARS-217ENST00000440048 NRKQ7Z2Y5 1582 aa33.21■■■□□ 2.91
VARS-217ENST00000440048 GJD4Q96KN9 370 aaPredicted RBP33.2■■■□□ 2.91
VARS-217ENST00000440048 PRDM11Q9NQV5 511 aa33.2■■■□□ 2.91
VARS-217ENST00000440048 KIAA0232Q92628 1395 aa33.2■■■□□ 2.9
VARS-217ENST00000440048 ZC3H6P61129 1189 aaKnown RBP33.19■■■□□ 2.9
VARS-217ENST00000440048 NRAPQ86VF7 1730 aa33.19■■■□□ 2.9
VARS-217ENST00000440048 NLRP6P59044 892 aa33.18■■■□□ 2.9
VARS-217ENST00000440048 TMF1P82094 1093 aa33.18■■■□□ 2.9
VARS-217ENST00000440048 UPF1Q92900 1129 aaKnown RBP eCLIP33.18■■■□□ 2.9
VARS-217ENST00000440048 BTG4Q9NY30 223 aa33.18■■■□□ 2.9
VARS-217ENST00000440048 VPS72Q15906 364 aa33.16■■■□□ 2.9
VARS-217ENST00000440048 TTC21AQ8NDW8 1320 aa33.16■■■□□ 2.9
VARS-217ENST00000440048 GCP02774 474 aa33.15■■■□□ 2.9
VARS-217ENST00000440048 GLI3P10071 1580 aa33.15■■■□□ 2.9
VARS-217ENST00000440048 CHRNA2Q15822 529 aa33.15■■■□□ 2.9
VARS-217ENST00000440048 HDGFL2Q7Z4V5 671 aaPredicted RBP33.15■■■□□ 2.9
VARS-217ENST00000440048 TERF2IPQ9NYB0 399 aa33.13■■■□□ 2.89
VARS-217ENST00000440048 SLIT3O75094 1523 aa33.12■■■□□ 2.89
VARS-217ENST00000440048 NINLQ9Y2I6 1382 aa33.12■■■□□ 2.89
VARS-217ENST00000440048 CPDO75976 1380 aa33.11■■■□□ 2.89
VARS-217ENST00000440048 A0A1W2PP64 1363 aa33.1■■■□□ 2.89
VARS-217ENST00000440048 CCDC9Q9Y3X0 531 aaKnown RBP33.1■■■□□ 2.89
VARS-217ENST00000440048 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.09■■■□□ 2.89
VARS-217ENST00000440048 EDC4Q6P2E9 1401 aaKnown RBP33.07■■■□□ 2.88
VARS-217ENST00000440048 CDCA8Q53HL2 280 aa33.06■■■□□ 2.88
VARS-217ENST00000440048 LMO7Q8WWI1 1683 aa33.04■■■□□ 2.88
VARS-217ENST00000440048 EIF4G2P78344 907 aaKnown RBP eCLIP33.03■■■□□ 2.88
VARS-217ENST00000440048 NME9Q86XW9 330 aa33.03■■■□□ 2.88
VARS-217ENST00000440048 ZRANB1Q9UGI0 708 aa33.03■■■□□ 2.88
VARS-217ENST00000440048 CAMTA1Q9Y6Y1 1673 aa33.02■■■□□ 2.88
VARS-217ENST00000440048 USP31Q70CQ4 1352 aa33.02■■■□□ 2.88
VARS-217ENST00000440048 USP54Q70EL1 1684 aa33.01■■■□□ 2.88
VARS-217ENST00000440048 ANKRD36BQ8N2N9 1353 aa33■■■□□ 2.87
VARS-217ENST00000440048 HSPA5P11021 654 aaKnown RBP33■■■□□ 2.87
VARS-217ENST00000440048 KCNH5Q8NCM2 988 aa33■■■□□ 2.87
VARS-217ENST00000440048 STRN4Q9NRL3 753 aa33■■■□□ 2.87
VARS-217ENST00000440048 SPATA31A5Q5VU36 1347 aa33■■■□□ 2.87
VARS-217ENST00000440048 SPATA31A7Q8IWB4 1347 aa33■■■□□ 2.87
VARS-217ENST00000440048 ZBTB7CA1YPR0 619 aa32.99■■■□□ 2.87
VARS-217ENST00000440048 SOX12O15370 315 aa32.98■■■□□ 2.87
VARS-217ENST00000440048 ONECUT3O60422 494 aaPredicted RBP32.98■■■□□ 2.87
VARS-217ENST00000440048 EVA1CP58658 441 aa32.97■■■□□ 2.87
VARS-217ENST00000440048 BRWD3Q6RI45 1802 aa32.97■■■□□ 2.87
VARS-217ENST00000440048 NFAT5O94916 1531 aa32.97■■■□□ 2.87
VARS-217ENST00000440048 AATKQ6ZMQ8 1374 aa32.96■■■□□ 2.87
VARS-217ENST00000440048 SEPT12Q8IYM1 358 aa32.96■■■□□ 2.87
VARS-217ENST00000440048 COL18A1P39060 1754 aa32.95■■■□□ 2.87
VARS-217ENST00000440048 MYOM1P52179 1685 aa32.94■■■□□ 2.86
VARS-217ENST00000440048 FAM98CQ17RN3 349 aaKnown RBP32.94■■■□□ 2.86
VARS-217ENST00000440048 ARHGEF25Q86VW2 580 aa32.94■■■□□ 2.86
VARS-217ENST00000440048 SPATA31A1Q5TZJ5 1347 aa32.93■■■□□ 2.86
VARS-217ENST00000440048 EP400Q96L91 3159 aa32.93■■■□□ 2.86
VARS-217ENST00000440048 COL5A2P05997 1499 aaPredicted RBP32.92■■■□□ 2.86
VARS-217ENST00000440048 LARP1Q6PKG0 1096 aaKnown RBP32.91■■■□□ 2.86
VARS-217ENST00000440048 CCDC125Q86Z20 511 aa32.9■■■□□ 2.86
VARS-217ENST00000440048 OVOS2A0A0J9YW53 1432 aa32.9■■■□□ 2.86
VARS-217ENST00000440048 OVOS2Q6IE36 1432 aa32.9■■■□□ 2.86
VARS-217ENST00000440048 A0A0G2JS52 829 aa32.88■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms