RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 CC2D1BQ5T0F9 858 aaKnown RBP28.2■■■□□ 2.1
CHD3-204ENST00000439235 NPHP3Q7Z494 1330 aa28.19■■■□□ 2.1
CHD3-204ENST00000439235 FOXO3O43524 673 aa28.19■■■□□ 2.1
CHD3-204ENST00000439235 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.19■■■□□ 2.1
CHD3-204ENST00000439235 PRKRIP1Q9H875 184 aaPredicted RBP28.19■■■□□ 2.1
CHD3-204ENST00000439235 KIF20BQ96Q89 1820 aa28.18■■■□□ 2.1
CHD3-204ENST00000439235 TOM1O60784 492 aa28.18■■■□□ 2.1
CHD3-204ENST00000439235 RALBP1Q15311 655 aa28.18■■■□□ 2.1
CHD3-204ENST00000439235 PARD3Q8TEW0 1356 aa28.17■■■□□ 2.1
CHD3-204ENST00000439235 CNGB1Q14028 1251 aaPredicted RBP28.17■■■□□ 2.1
CHD3-204ENST00000439235 FYB1O15117 783 aa28.15■■■□□ 2.1
CHD3-204ENST00000439235 KRT28Q7Z3Y7 464 aa28.14■■■□□ 2.1
CHD3-204ENST00000439235 ANKRD26Q9UPS8 1709 aa28.13■■■□□ 2.09
CHD3-204ENST00000439235 MIER1Q8N108 512 aa28.13■■■□□ 2.09
CHD3-204ENST00000439235 NME9Q86XW9 330 aa28.12■■■□□ 2.09
CHD3-204ENST00000439235 GGNBP2Q9H3C7 697 aa28.12■■■□□ 2.09
CHD3-204ENST00000439235 PAK3O75914 559 aaPredicted RBP28.11■■■□□ 2.09
CHD3-204ENST00000439235 MORC1Q86VD1 984 aa28.11■■■□□ 2.09
CHD3-204ENST00000439235 ROBO1Q9Y6N7 1651 aa28.1■■■□□ 2.09
CHD3-204ENST00000439235 PXDNQ92626 1479 aa28.1■■■□□ 2.09
CHD3-204ENST00000439235 TRPM3Q9HCF6 1732 aaPredicted RBP28.1■■■□□ 2.09
CHD3-204ENST00000439235 NHSL1Q5SYE7 1610 aa28.1■■■□□ 2.09
CHD3-204ENST00000439235 SBNO1A3KN83 1393 aa28.1■■■□□ 2.09
CHD3-204ENST00000439235 UBAP1LF5GYI3 381 aa28.09■■■□□ 2.09
CHD3-204ENST00000439235 XPCQ01831 940 aaPredicted RBP28.09■■■□□ 2.09
CHD3-204ENST00000439235 PIK3C2AO00443 1686 aa28.08■■■□□ 2.09
CHD3-204ENST00000439235 COG3Q96JB2 828 aa28.08■■■□□ 2.09
CHD3-204ENST00000439235 MYBBP1AQ9BQG0 1328 aaKnown RBP28.08■■■□□ 2.09
CHD3-204ENST00000439235 USP31Q70CQ4 1352 aa28.08■■■□□ 2.09
CHD3-204ENST00000439235 OVOS2A0A0J9YW53 1432 aa28.07■■■□□ 2.08
CHD3-204ENST00000439235 OVOS2Q6IE36 1432 aa28.07■■■□□ 2.08
CHD3-204ENST00000439235 DDX17Q92841 729 aaKnown RBP28.06■■■□□ 2.08
CHD3-204ENST00000439235 AHDC1Q5TGY3 1603 aaPredicted RBP28.05■■■□□ 2.08
CHD3-204ENST00000439235 ABTB2Q8N961 1025 aa28.05■■■□□ 2.08
CHD3-204ENST00000439235 USP54Q70EL1 1684 aa28.04■■■□□ 2.08
CHD3-204ENST00000439235 TNS3Q68CZ2 1445 aa28.04■■■□□ 2.08
CHD3-204ENST00000439235 SOS2Q07890 1332 aaPredicted RBP28.04■■■□□ 2.08
CHD3-204ENST00000439235 SCAF1Q9H7N4 1312 aaKnown RBP28.03■■■□□ 2.08
CHD3-204ENST00000439235 CCER2I3L3R5 266 aa28.02■■■□□ 2.08
CHD3-204ENST00000439235 ZRANB1Q9UGI0 708 aa28.02■■■□□ 2.08
CHD3-204ENST00000439235 ALS2Q96Q42 1657 aa28.01■■■□□ 2.07
CHD3-204ENST00000439235 NLRP6P59044 892 aa28.01■■■□□ 2.07
CHD3-204ENST00000439235 PIP4K2BP78356 416 aa28.01■■■□□ 2.07
CHD3-204ENST00000439235 ARHGEF10O15013 1369 aa28■■■□□ 2.07
CHD3-204ENST00000439235 NLRP13Q86W25 1043 aa28■■■□□ 2.07
CHD3-204ENST00000439235 SPATA31A3Q5VYP0 1347 aa27.99■■■□□ 2.07
CHD3-204ENST00000439235 PPP2R1AP30153 589 aa27.99■■■□□ 2.07
CHD3-204ENST00000439235 LMOD2Q6P5Q4 547 aa27.98■■■□□ 2.07
CHD3-204ENST00000439235 TNNT2P45379 298 aaPredicted RBP27.97■■■□□ 2.07
CHD3-204ENST00000439235 AATKQ6ZMQ8 1374 aa27.96■■■□□ 2.07
CHD3-204ENST00000439235 NUTM2GQ5VZR2 741 aa27.95■■■□□ 2.06
CHD3-204ENST00000439235 MARF1Q9Y4F3 1742 aaKnown RBP27.94■■■□□ 2.06
CHD3-204ENST00000439235 MED1Q15648 1581 aaPredicted RBP27.93■■■□□ 2.06
CHD3-204ENST00000439235 USP19O94966 1318 aa27.92■■■□□ 2.06
CHD3-204ENST00000439235 SLIT3O75094 1523 aa27.92■■■□□ 2.06
CHD3-204ENST00000439235 PHLPP1O60346 1717 aa27.92■■■□□ 2.06
CHD3-204ENST00000439235 KCNH5Q8NCM2 988 aa27.91■■■□□ 2.06
CHD3-204ENST00000439235 LRRC59Q96AG4 307 aaKnown RBP27.9■■■□□ 2.06
CHD3-204ENST00000439235 MRS2Q9HD23 443 aa27.89■■■□□ 2.06
CHD3-204ENST00000439235 SMG6Q86US8 1419 aaKnown RBP27.89■■■□□ 2.06
CHD3-204ENST00000439235 COL16A1Q07092 1604 aaPredicted RBP27.89■■■□□ 2.05
CHD3-204ENST00000439235 SOX12O15370 315 aa27.85■■■□□ 2.05
CHD3-204ENST00000439235 MTHFSP49914 203 aa27.85■■■□□ 2.05
CHD3-204ENST00000439235 CFAP53Q96M91 514 aa27.85■■■□□ 2.05
CHD3-204ENST00000439235 NFAT5O94916 1531 aa27.85■■■□□ 2.05
CHD3-204ENST00000439235 PHRF1Q9P1Y6 1649 aaKnown RBP27.85■■■□□ 2.05
CHD3-204ENST00000439235 POLKQ9UBT6 870 aa27.84■■■□□ 2.05
CHD3-204ENST00000439235 GCP02774 474 aa27.83■■■□□ 2.05
CHD3-204ENST00000439235 CDK12Q9NYV4 1490 aaPredicted RBP27.83■■■□□ 2.04
CHD3-204ENST00000439235 CRYBG1Q9Y4K1 1723 aa27.82■■■□□ 2.04
CHD3-204ENST00000439235 RRS1Q15050 365 aaKnown RBP27.82■■■□□ 2.04
CHD3-204ENST00000439235 CCDC184Q52MB2 194 aa27.82■■■□□ 2.04
CHD3-204ENST00000439235 FBLN1P23142 703 aa27.81■■■□□ 2.04
CHD3-204ENST00000439235 EMILIN1Q9Y6C2 1016 aa27.81■■■□□ 2.04
CHD3-204ENST00000439235 KIF24Q5T7B8 1368 aa27.81■■■□□ 2.04
CHD3-204ENST00000439235 PNPLA6Q8IY17 1366 aa27.81■■■□□ 2.04
CHD3-204ENST00000439235 MAP3K19Q56UN5 1328 aa27.8■■■□□ 2.04
CHD3-204ENST00000439235 COL22A1Q8NFW1 1626 aaPredicted RBP27.8■■■□□ 2.04
CHD3-204ENST00000439235 RTL1A6NKG5 1358 aa27.79■■■□□ 2.04
CHD3-204ENST00000439235 PLEKHG5O94827 1062 aa27.79■■■□□ 2.04
CHD3-204ENST00000439235 HSPA1LP34931 641 aa27.79■■■□□ 2.04
CHD3-204ENST00000439235 PPM1GO15355 546 aaPredicted RBP27.78■■■□□ 2.04
CHD3-204ENST00000439235 MAP2P11137 1827 aaKnown RBP27.78■■■□□ 2.04
CHD3-204ENST00000439235 INSRP06213 1382 aa27.77■■■□□ 2.04
CHD3-204ENST00000439235 HAP1P54257 671 aaPredicted RBP27.77■■■□□ 2.04
CHD3-204ENST00000439235 FLT4P35916 1363 aa27.76■■■□□ 2.03
CHD3-204ENST00000439235 ABCA3Q99758 1704 aa27.76■■■□□ 2.03
CHD3-204ENST00000439235 AMPHP49418 695 aa27.76■■■□□ 2.03
CHD3-204ENST00000439235 CABLES1Q8TDN4 633 aa27.75■■■□□ 2.03
CHD3-204ENST00000439235 COL3A1P02461 1466 aaPredicted RBP27.75■■■□□ 2.03
CHD3-204ENST00000439235 PEAK1Q9H792 1746 aa27.73■■■□□ 2.03
CHD3-204ENST00000439235 ARHGEF25Q86VW2 580 aa27.73■■■□□ 2.03
CHD3-204ENST00000439235 LTN1O94822 1766 aa27.73■■■□□ 2.03
CHD3-204ENST00000439235 CPDO75976 1380 aa27.73■■■□□ 2.03
CHD3-204ENST00000439235 JCADQ9P266 1359 aa27.72■■■□□ 2.03
CHD3-204ENST00000439235 SHPRHQ149N8 1683 aa27.72■■■□□ 2.03
CHD3-204ENST00000439235 PNISRQ8TF01 805 aaKnown RBP27.71■■■□□ 2.03
CHD3-204ENST00000439235 ABCC6O95255 1503 aa27.71■■■□□ 2.03
CHD3-204ENST00000439235 WDR43Q15061 677 aaKnown RBP eCLIP27.7■■■□□ 2.02
CHD3-204ENST00000439235 ZBTB7CA1YPR0 619 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms