RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CCER1Q8TC90 406 aaPredicted RBP21.52■■□□□ 1.04
LIMS3-201ENST00000437679 SBNO2Q9Y2G9 1366 aa21.5■■□□□ 1.03
LIMS3-201ENST00000437679 RBM6P78332 1123 aaKnown RBP21.49■■□□□ 1.03
LIMS3-201ENST00000437679 CABP1Q9NZU7 370 aa21.49■■□□□ 1.03
LIMS3-201ENST00000437679 TRPC5Q9UL62 973 aaPredicted RBP21.49■■□□□ 1.03
LIMS3-201ENST00000437679 ABCA3Q99758 1704 aa21.49■■□□□ 1.03
LIMS3-201ENST00000437679 ATAD2Q6PL18 1390 aa21.46■■□□□ 1.03
LIMS3-201ENST00000437679 BCL9LQ86UU0 1499 aa21.45■■□□□ 1.02
LIMS3-201ENST00000437679 CDK12Q9NYV4 1490 aaPredicted RBP21.45■■□□□ 1.02
LIMS3-201ENST00000437679 ABTB2Q8N961 1025 aa21.44■■□□□ 1.02
LIMS3-201ENST00000437679 BRD4O60885 1362 aaPredicted RBP21.44■■□□□ 1.02
LIMS3-201ENST00000437679 ATRNO75882 1429 aa21.44■■□□□ 1.02
LIMS3-201ENST00000437679 SLIT2O94813 1529 aa21.44■■□□□ 1.02
LIMS3-201ENST00000437679 UNC5CLQ8IV45 518 aa21.43■■□□□ 1.02
LIMS3-201ENST00000437679 NUTM2GQ5VZR2 741 aa21.42■■□□□ 1.02
LIMS3-201ENST00000437679 USP6P35125 1406 aa21.41■■□□□ 1.02
LIMS3-201ENST00000437679 ST20-MTHFSA0A0A6YYL1 179 aa21.41■■□□□ 1.02
LIMS3-201ENST00000437679 SLC24A1O60721 1099 aa21.41■■□□□ 1.02
LIMS3-201ENST00000437679 ZNF692Q9BU19 519 aaPredicted RBP21.41■■□□□ 1.02
LIMS3-201ENST00000437679 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.41■■□□□ 1.02
LIMS3-201ENST00000437679 CRYBG1Q9Y4K1 1723 aa21.41■■□□□ 1.02
LIMS3-201ENST00000437679 FAM83GA6ND36 823 aa21.4■■□□□ 1.02
LIMS3-201ENST00000437679 NWD2Q9ULI1 1742 aa21.39■■□□□ 1.01
LIMS3-201ENST00000437679 USP47Q96K76 1375 aa21.38■■□□□ 1.01
LIMS3-201ENST00000437679 PLCH1Q4KWH8 1693 aa21.38■■□□□ 1.01
LIMS3-201ENST00000437679 NLRP13Q86W25 1043 aa21.38■■□□□ 1.01
LIMS3-201ENST00000437679 RGS12O14924 1447 aa21.38■■□□□ 1.01
LIMS3-201ENST00000437679 GJD4Q96KN9 370 aaPredicted RBP21.37■■□□□ 1.01
LIMS3-201ENST00000437679 PUS7Q96PZ0 661 aaKnown RBP21.37■■□□□ 1.01
LIMS3-201ENST00000437679 TESK2Q96S53 571 aa21.37■■□□□ 1.01
LIMS3-201ENST00000437679 PRDM11Q9NQV5 511 aa21.37■■□□□ 1.01
LIMS3-201ENST00000437679 PHRF1Q9P1Y6 1649 aaKnown RBP21.37■■□□□ 1.01
LIMS3-201ENST00000437679 AKAP12Q02952 1782 aa21.36■■□□□ 1.01
LIMS3-201ENST00000437679 COL14A1Q05707 1796 aaKnown RBP21.36■■□□□ 1.01
LIMS3-201ENST00000437679 TMC1Q8TDI8 760 aa21.36■■□□□ 1.01
LIMS3-201ENST00000437679 BTG4Q9NY30 223 aa21.35■■□□□ 1.01
LIMS3-201ENST00000437679 USP19O94966 1318 aa21.34■■□□□ 1.01
LIMS3-201ENST00000437679 NLRP6P59044 892 aa21.34■■□□□ 1.01
LIMS3-201ENST00000437679 ZC3H6P61129 1189 aaKnown RBP21.34■■□□□ 1.01
LIMS3-201ENST00000437679 VPS72Q15906 364 aa21.34■■□□□ 1.01
LIMS3-201ENST00000437679 CCDC9Q9Y3X0 531 aaKnown RBP21.34■■□□□ 1.01
LIMS3-201ENST00000437679 CPSF1Q10570 1443 aaKnown RBP21.34■■□□□ 1.01
LIMS3-201ENST00000437679 SSH2Q76I76 1423 aa21.34■■□□□ 1.01
LIMS3-201ENST00000437679 KTN1Q86UP2 1357 aaKnown RBP21.34■■□□□ 1.01
LIMS3-201ENST00000437679 KIAA0232Q92628 1395 aa21.34■■□□□ 1.01
LIMS3-201ENST00000437679 TTC21BQ7Z4L5 1316 aa21.32■■□□□ 1
LIMS3-201ENST00000437679 HDGFL2Q7Z4V5 671 aaPredicted RBP21.32■■□□□ 1
LIMS3-201ENST00000437679 TTC21AQ8NDW8 1320 aa21.31■■□□□ 1
LIMS3-201ENST00000437679 TMF1P82094 1093 aa21.31■■□□□ 1
LIMS3-201ENST00000437679 SLC12A5Q9H2X9 1139 aa21.31■■□□□ 1
LIMS3-201ENST00000437679 NRKQ7Z2Y5 1582 aa21.31■■□□□ 1
LIMS3-201ENST00000437679 NRAPQ86VF7 1730 aa21.3■■□□□ 1
LIMS3-201ENST00000437679 GCP02774 474 aa21.3■■□□□ 1
LIMS3-201ENST00000437679 CHRNA2Q15822 529 aa21.3■■□□□ 1
LIMS3-201ENST00000437679 TERF2IPQ9NYB0 399 aa21.3■■□□□ 1
LIMS3-201ENST00000437679 PIK3C2AO00443 1686 aa21.29■■□□□ 1
LIMS3-201ENST00000437679 GLI3P10071 1580 aa21.29■■□□□ 1
LIMS3-201ENST00000437679 MON2Q7Z3U7 1717 aa21.29■■□□□ 1
LIMS3-201ENST00000437679 NINLQ9Y2I6 1382 aa21.28■■□□□ 1
LIMS3-201ENST00000437679 CD163L1Q9NR16 1453 aa21.27■■□□□ 1
LIMS3-201ENST00000437679 CPDO75976 1380 aa21.27■■□□□ 1
LIMS3-201ENST00000437679 CDCA8Q53HL2 280 aa21.26■□□□□ 0.99
LIMS3-201ENST00000437679 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.26■□□□□ 0.99
LIMS3-201ENST00000437679 SLIT3O75094 1523 aa21.25■□□□□ 0.99
LIMS3-201ENST00000437679 UPF1Q92900 1129 aaKnown RBP eCLIP21.25■□□□□ 0.99
LIMS3-201ENST00000437679 A0A1W2PP64 1363 aa21.24■□□□□ 0.99
LIMS3-201ENST00000437679 EVA1CP58658 441 aa21.24■□□□□ 0.99
LIMS3-201ENST00000437679 EDC4Q6P2E9 1401 aaKnown RBP21.23■□□□□ 0.99
LIMS3-201ENST00000437679 ZBTB7CA1YPR0 619 aa21.23■□□□□ 0.99
LIMS3-201ENST00000437679 KCNH5Q8NCM2 988 aa21.23■□□□□ 0.99
LIMS3-201ENST00000437679 STRN4Q9NRL3 753 aa21.23■□□□□ 0.99
LIMS3-201ENST00000437679 SEPT12Q8IYM1 358 aa21.22■□□□□ 0.99
LIMS3-201ENST00000437679 SPATA31A5Q5VU36 1347 aa21.22■□□□□ 0.99
LIMS3-201ENST00000437679 SPATA31A7Q8IWB4 1347 aa21.22■□□□□ 0.99
LIMS3-201ENST00000437679 ONECUT3O60422 494 aaPredicted RBP21.21■□□□□ 0.99
LIMS3-201ENST00000437679 A0A0G2JS52 829 aa21.2■□□□□ 0.98
LIMS3-201ENST00000437679 SOX12O15370 315 aa21.2■□□□□ 0.98
LIMS3-201ENST00000437679 MYT1Q01538 1121 aa21.2■□□□□ 0.98
LIMS3-201ENST00000437679 FAM98CQ17RN3 349 aaKnown RBP21.2■□□□□ 0.98
LIMS3-201ENST00000437679 NME9Q86XW9 330 aa21.2■□□□□ 0.98
LIMS3-201ENST00000437679 CAMTA1Q9Y6Y1 1673 aa21.2■□□□□ 0.98
LIMS3-201ENST00000437679 USP31Q70CQ4 1352 aa21.2■□□□□ 0.98
LIMS3-201ENST00000437679 LMO7Q8WWI1 1683 aa21.19■□□□□ 0.98
LIMS3-201ENST00000437679 EIF4G2P78344 907 aaKnown RBP eCLIP21.19■□□□□ 0.98
LIMS3-201ENST00000437679 ZRANB1Q9UGI0 708 aa21.18■□□□□ 0.98
LIMS3-201ENST00000437679 AATKQ6ZMQ8 1374 aa21.18■□□□□ 0.98
LIMS3-201ENST00000437679 ANKRD36BQ8N2N9 1353 aa21.18■□□□□ 0.98
LIMS3-201ENST00000437679 SPATA31A1Q5TZJ5 1347 aa21.17■□□□□ 0.98
LIMS3-201ENST00000437679 BRWD3Q6RI45 1802 aa21.17■□□□□ 0.98
LIMS3-201ENST00000437679 ARHGEF25Q86VW2 580 aa21.16■□□□□ 0.98
LIMS3-201ENST00000437679 USP54Q70EL1 1684 aa21.15■□□□□ 0.98
LIMS3-201ENST00000437679 LARP1Q6PKG0 1096 aaKnown RBP21.15■□□□□ 0.98
LIMS3-201ENST00000437679 COL5A2P05997 1499 aaPredicted RBP21.14■□□□□ 0.98
LIMS3-201ENST00000437679 HSPA5P11021 654 aaKnown RBP21.14■□□□□ 0.97
LIMS3-201ENST00000437679 KRT27Q7Z3Y8 459 aa21.14■□□□□ 0.97
LIMS3-201ENST00000437679 USP35Q9P2H5 1018 aa21.14■□□□□ 0.97
LIMS3-201ENST00000437679 NFAT5O94916 1531 aa21.14■□□□□ 0.97
LIMS3-201ENST00000437679 COL18A1P39060 1754 aa21.12■□□□□ 0.97
LIMS3-201ENST00000437679 TCP11L2Q8N4U5 519 aa21.11■□□□□ 0.97
LIMS3-201ENST00000437679 OVOS2A0A0J9YW53 1432 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms