RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 RFX1P22670 979 aa10.62□□□□□ -0.71
USP54-206ENST00000433394 SPSB2Q99619 263 aa10.62□□□□□ -0.71
USP54-206ENST00000433394 PPP1R12CQ9BZL4 782 aa10.62□□□□□ -0.71
USP54-206ENST00000433394 CSB-PGBD3P0DP91 1061 aa10.61□□□□□ -0.71
USP54-206ENST00000433394 MSS51Q4VC12 460 aa10.61□□□□□ -0.71
USP54-206ENST00000433394 RETREG2Q8NC44 543 aa10.61□□□□□ -0.71
USP54-206ENST00000433394 WBP1LQ9NX94 342 aa10.61□□□□□ -0.71
USP54-206ENST00000433394 CCNYL3P0C7X3 344 aa10.6□□□□□ -0.71
USP54-206ENST00000433394 GPR37L1O60883 481 aa10.59□□□□□ -0.71
USP54-206ENST00000433394 LMOD1P29536 600 aaPredicted RBP10.59□□□□□ -0.71
USP54-206ENST00000433394 NBPF14Q5TI25 921 aa10.59□□□□□ -0.71
USP54-206ENST00000433394 ADAMTS19Q8TE59 1207 aa10.59□□□□□ -0.71
USP54-206ENST00000433394 GPKOWQ92917 476 aaPredicted RBP eCLIP10.59□□□□□ -0.71
USP54-206ENST00000433394 THAP11Q96EK4 314 aa10.59□□□□□ -0.71
USP54-206ENST00000433394 PALM3A6NDB9 673 aaPredicted RBP10.58□□□□□ -0.72
USP54-206ENST00000433394 PATL2C9JE40 543 aaKnown RBP10.58□□□□□ -0.72
USP54-206ENST00000433394 COPS2P61201 443 aa10.58□□□□□ -0.72
USP54-206ENST00000433394 PTK2Q05397 1052 aa10.58□□□□□ -0.72
USP54-206ENST00000433394 THSD4Q6ZMP0 1018 aa10.58□□□□□ -0.72
USP54-206ENST00000433394 NUDT12Q9BQG2 462 aa10.58□□□□□ -0.72
USP54-206ENST00000433394 MCCD1P59942 119 aaPredicted RBP10.57□□□□□ -0.72
USP54-206ENST00000433394 GPSM3Q9Y4H4 160 aa10.57□□□□□ -0.72
USP54-206ENST00000433394 F12P00748 615 aaPredicted RBP10.56□□□□□ -0.72
USP54-206ENST00000433394 AEBP1Q8IUX7 1158 aa10.56□□□□□ -0.72
USP54-206ENST00000433394 KCTD12Q96CX2 325 aaKnown RBP10.56□□□□□ -0.72
USP54-206ENST00000433394 MAP10Q9P2G4 905 aa10.56□□□□□ -0.72
USP54-206ENST00000433394 TFIP11Q9UBB9 837 aaKnown RBP10.56□□□□□ -0.72
USP54-206ENST00000433394 DXOO77932 396 aaKnown RBP10.55□□□□□ -0.72
USP54-206ENST00000433394 FBXO45P0C2W1 286 aa10.55□□□□□ -0.72
USP54-206ENST00000433394 CFAP70Q5T0N1 1121 aa10.55□□□□□ -0.72
USP54-206ENST00000433394 EVA1BQ9NVM1 165 aa10.55□□□□□ -0.72
USP54-206ENST00000433394 USTQ9Y2C2 406 aa10.55□□□□□ -0.72
USP54-206ENST00000433394 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.54□□□□□ -0.72
USP54-206ENST00000433394 ADH1BP00325 375 aa10.54□□□□□ -0.72
USP54-206ENST00000433394 KCNH2Q12809 1159 aa10.54□□□□□ -0.72
USP54-206ENST00000433394 CCDC9Q9Y3X0 531 aaKnown RBP10.54□□□□□ -0.72
USP54-206ENST00000433394 ATP9BO43861 1147 aa10.53□□□□□ -0.72
USP54-206ENST00000433394 MMP16P51512 607 aa10.53□□□□□ -0.72
USP54-206ENST00000433394 PDXDC2PQ6P474 469 aa10.53□□□□□ -0.72
USP54-206ENST00000433394 ZPR1O75312 459 aa10.52□□□□□ -0.73
USP54-206ENST00000433394 CCDC24Q8N4L8 307 aa10.52□□□□□ -0.73
USP54-206ENST00000433394 SLFNL1Q499Z3 407 aa10.51□□□□□ -0.73
USP54-206ENST00000433394 NFATC2IPQ8NCF5 419 aa10.51□□□□□ -0.73
USP54-206ENST00000433394 MAFBQ9Y5Q3 323 aaPredicted RBP10.51□□□□□ -0.73
USP54-206ENST00000433394 ZBTB33Q86T24 672 aa10.5□□□□□ -0.73
USP54-206ENST00000433394 FAM160A2Q8N612 972 aaPredicted RBP10.5□□□□□ -0.73
USP54-206ENST00000433394 VRTNQ9H8Y1 702 aa10.5□□□□□ -0.73
USP54-206ENST00000433394 IL21Q9HBE4 155 aa10.5□□□□□ -0.73
USP54-206ENST00000433394 PCDHB9Q9Y5E1 797 aa10.5□□□□□ -0.73
USP54-206ENST00000433394 UCN2Q96RP3 112 aa10.49□□□□□ -0.73
USP54-206ENST00000433394 SLC6A16Q9GZN6 736 aa10.49□□□□□ -0.73
USP54-206ENST00000433394 TBC1D9Q6ZT07 1266 aa10.48□□□□□ -0.73
USP54-206ENST00000433394 MTRQ99707 1265 aa10.48□□□□□ -0.73
USP54-206ENST00000433394 ARHGAP9Q9BRR9 750 aa10.48□□□□□ -0.73
USP54-206ENST00000433394 SKIP12755 728 aa10.47□□□□□ -0.73
USP54-206ENST00000433394 PTPN5P54829 565 aa10.47□□□□□ -0.73
USP54-206ENST00000433394 B4GALNT3Q6L9W6 998 aa10.47□□□□□ -0.73
USP54-206ENST00000433394 ATG7O95352 703 aa10.46□□□□□ -0.73
USP54-206ENST00000433394 PRDM9Q9NQV7 894 aa10.46□□□□□ -0.73
USP54-206ENST00000433394 TLL1O43897 1013 aa10.45□□□□□ -0.74
USP54-206ENST00000433394 AGERQ15109 404 aa10.45□□□□□ -0.74
USP54-206ENST00000433394 RNF135Q8IUD6 432 aa10.45□□□□□ -0.74
USP54-206ENST00000433394 UNC93B1Q9H1C4 597 aa10.45□□□□□ -0.74
USP54-206ENST00000433394 LZTS3O60299 673 aaPredicted RBP10.44□□□□□ -0.74
USP54-206ENST00000433394 BRD1O95696 1058 aa10.44□□□□□ -0.74
USP54-206ENST00000433394 CDCA8Q53HL2 280 aa10.44□□□□□ -0.74
USP54-206ENST00000433394 DZIP3Q86Y13 1208 aaKnown RBP10.44□□□□□ -0.74
USP54-206ENST00000433394 USP17L3A6NCW0 530 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 USP17L4A6NCW7 530 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 USP17L5A8MUK1 530 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 RANGAP1P46060 587 aaPredicted RBP10.42□□□□□ -0.74
USP54-206ENST00000433394 KCNA1Q09470 495 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 USP17L2Q6R6M4 530 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 USP17L1Q7RTZ2 530 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 BPHLQ86WA6 291 aaPredicted RBP10.42□□□□□ -0.74
USP54-206ENST00000433394 PLEKHM2Q8IWE5 1019 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 ADAM32Q8TC27 787 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 CEP126Q9P2H0 1117 aa10.42□□□□□ -0.74
USP54-206ENST00000433394 SRPK2P78362 688 aaKnown RBP10.41□□□□□ -0.74
USP54-206ENST00000433394 MAP7D1Q3KQU3 841 aa10.41□□□□□ -0.74
USP54-206ENST00000433394 LARP1Q6PKG0 1096 aaKnown RBP10.41□□□□□ -0.74
USP54-206ENST00000433394 HCSTQ9UBK5 93 aa10.41□□□□□ -0.74
USP54-206ENST00000433394 MAGEB6P1A0A0J9YX57 407 aa10.4□□□□□ -0.74
USP54-206ENST00000433394 ATP5J2-PTCD1G3V325 749 aa10.4□□□□□ -0.74
USP54-206ENST00000433394 RNF20Q5VTR2 975 aa10.4□□□□□ -0.74
USP54-206ENST00000433394 CARD14Q9BXL6 1004 aa10.4□□□□□ -0.74
USP54-206ENST00000433394 ZBTB24O43167 697 aaPredicted RBP10.39□□□□□ -0.75
USP54-206ENST00000433394 EML3Q32P44 896 aa10.39□□□□□ -0.75
USP54-206ENST00000433394 TJAP1Q5JTD0 557 aa10.39□□□□□ -0.75
USP54-206ENST00000433394 RBM19Q9Y4C8 960 aaKnown RBP10.39□□□□□ -0.75
USP54-206ENST00000433394 PIK3CDO00329 1044 aa10.38□□□□□ -0.75
USP54-206ENST00000433394 GGCXP38435 758 aa10.38□□□□□ -0.75
USP54-206ENST00000433394 ELOAQ14241 798 aaKnown RBP10.38□□□□□ -0.75
USP54-206ENST00000433394 TMCO4Q5TGY1 634 aa10.38□□□□□ -0.75
USP54-206ENST00000433394 TRIM50Q86XT4 487 aa10.38□□□□□ -0.75
USP54-206ENST00000433394 SLC10A4Q96EP9 437 aa10.38□□□□□ -0.75
USP54-206ENST00000433394 PLPP7Q8NBV4 271 aa10.37□□□□□ -0.75
USP54-206ENST00000433394 MKRN1Q9UHC7 482 aaKnown RBP10.37□□□□□ -0.75
USP54-206ENST00000433394 FAM196BA6NMK8 535 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 RASA1P20936 1047 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms