RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 PAK3O75914 559 aaPredicted RBP24.3■■□□□ 1.48
UBE3D-204ENST00000430071 ACEP12821 1306 aa24.3■■□□□ 1.48
UBE3D-204ENST00000430071 FAM83GA6ND36 823 aa24.29■■□□□ 1.48
UBE3D-204ENST00000430071 UNC5CLQ8IV45 518 aa24.29■■□□□ 1.48
UBE3D-204ENST00000430071 CABP2Q9NPB3 220 aa24.29■■□□□ 1.48
UBE3D-204ENST00000430071 NRAPQ86VF7 1730 aa24.29■■□□□ 1.48
UBE3D-204ENST00000430071 GJD4Q96KN9 370 aaPredicted RBP24.28■■□□□ 1.48
UBE3D-204ENST00000430071 CCDC61Q9Y6R9 512 aa24.28■■□□□ 1.48
UBE3D-204ENST00000430071 POLR3AO14802 1390 aaPredicted RBP24.27■■□□□ 1.48
UBE3D-204ENST00000430071 PHRF1Q9P1Y6 1649 aaKnown RBP24.27■■□□□ 1.48
UBE3D-204ENST00000430071 CCER1Q8TC90 406 aaPredicted RBP24.27■■□□□ 1.48
UBE3D-204ENST00000430071 ROCK2O75116 1388 aaKnown RBP24.26■■□□□ 1.47
UBE3D-204ENST00000430071 RALGAPBQ86X10 1494 aa24.26■■□□□ 1.47
UBE3D-204ENST00000430071 PLEKHG3A1L390 1219 aa24.26■■□□□ 1.47
UBE3D-204ENST00000430071 SRPK2P78362 688 aaKnown RBP24.26■■□□□ 1.47
UBE3D-204ENST00000430071 NUTM2GQ5VZR2 741 aa24.26■■□□□ 1.47
UBE3D-204ENST00000430071 EP400Q96L91 3159 aa24.26■■□□□ 1.47
UBE3D-204ENST00000430071 COL14A1Q05707 1796 aaKnown RBP24.24■■□□□ 1.47
UBE3D-204ENST00000430071 PPIP5K1Q6PFW1 1433 aa24.23■■□□□ 1.47
UBE3D-204ENST00000430071 CLSPNQ9HAW4 1339 aa24.23■■□□□ 1.47
UBE3D-204ENST00000430071 VPS72Q15906 364 aa24.18■■□□□ 1.46
UBE3D-204ENST00000430071 BTG4Q9NY30 223 aa24.18■■□□□ 1.46
UBE3D-204ENST00000430071 CABP1Q9NZU7 370 aa24.18■■□□□ 1.46
UBE3D-204ENST00000430071 AKAP12Q02952 1782 aa24.17■■□□□ 1.46
UBE3D-204ENST00000430071 TONSLQ96HA7 1378 aa24.17■■□□□ 1.46
UBE3D-204ENST00000430071 CHRNA2Q15822 529 aa24.16■■□□□ 1.46
UBE3D-204ENST00000430071 CCDC9Q9Y3X0 531 aaKnown RBP24.16■■□□□ 1.46
UBE3D-204ENST00000430071 NRKQ7Z2Y5 1582 aa24.15■■□□□ 1.46
UBE3D-204ENST00000430071 ZC3H6P61129 1189 aaKnown RBP24.15■■□□□ 1.46
UBE3D-204ENST00000430071 KIAA0232Q92628 1395 aa24.14■■□□□ 1.46
UBE3D-204ENST00000430071 ABTB2Q8N961 1025 aa24.14■■□□□ 1.45
UBE3D-204ENST00000430071 EVC2Q86UK5 1308 aa24.14■■□□□ 1.45
UBE3D-204ENST00000430071 ATAD2Q6PL18 1390 aa24.14■■□□□ 1.45
UBE3D-204ENST00000430071 CARD11Q9BXL7 1154 aa24.13■■□□□ 1.45
UBE3D-204ENST00000430071 SEPT12Q8IYM1 358 aa24.12■■□□□ 1.45
UBE3D-204ENST00000430071 PRDM11Q9NQV5 511 aa24.12■■□□□ 1.45
UBE3D-204ENST00000430071 PIK3C2AO00443 1686 aa24.11■■□□□ 1.45
UBE3D-204ENST00000430071 USP6P35125 1406 aa24.11■■□□□ 1.45
UBE3D-204ENST00000430071 USP19O94966 1318 aa24.08■■□□□ 1.45
UBE3D-204ENST00000430071 ONECUT3O60422 494 aaPredicted RBP24.08■■□□□ 1.45
UBE3D-204ENST00000430071 SSH2Q76I76 1423 aa24.08■■□□□ 1.44
UBE3D-204ENST00000430071 LMO7Q8WWI1 1683 aa24.08■■□□□ 1.44
UBE3D-204ENST00000430071 FAM98CQ17RN3 349 aaKnown RBP24.07■■□□□ 1.44
UBE3D-204ENST00000430071 RGPD5Q99666 1765 aa24.07■■□□□ 1.44
UBE3D-204ENST00000430071 CAMTA1Q9Y6Y1 1673 aa24.06■■□□□ 1.44
UBE3D-204ENST00000430071 MON2Q7Z3U7 1717 aa24.05■■□□□ 1.44
UBE3D-204ENST00000430071 SPATA31A5Q5VU36 1347 aa24.05■■□□□ 1.44
UBE3D-204ENST00000430071 SPATA31A7Q8IWB4 1347 aa24.05■■□□□ 1.44
UBE3D-204ENST00000430071 STRN4Q9NRL3 753 aa24.03■■□□□ 1.44
UBE3D-204ENST00000430071 SBNO2Q9Y2G9 1366 aa24.03■■□□□ 1.44
UBE3D-204ENST00000430071 THSD7AQ9UPZ6 1657 aa24.03■■□□□ 1.44
UBE3D-204ENST00000430071 GCP02774 474 aa24.03■■□□□ 1.44
UBE3D-204ENST00000430071 NLRP13Q86W25 1043 aa24.03■■□□□ 1.44
UBE3D-204ENST00000430071 COL18A1P39060 1754 aa24.02■■□□□ 1.44
UBE3D-204ENST00000430071 NLRP6P59044 892 aa24.02■■□□□ 1.44
UBE3D-204ENST00000430071 CPSF1Q10570 1443 aaKnown RBP24.01■■□□□ 1.43
UBE3D-204ENST00000430071 SLIT3O75094 1523 aa24.01■■□□□ 1.43
UBE3D-204ENST00000430071 A0A0G2JS52 829 aa24.01■■□□□ 1.43
UBE3D-204ENST00000430071 MYT1Q01538 1121 aa24.01■■□□□ 1.43
UBE3D-204ENST00000430071 TIMELESSQ9UNS1 1208 aa24.01■■□□□ 1.43
UBE3D-204ENST00000430071 TTC21BQ7Z4L5 1316 aa24■■□□□ 1.43
UBE3D-204ENST00000430071 BRD4O60885 1362 aaPredicted RBP24■■□□□ 1.43
UBE3D-204ENST00000430071 FAM182BQ5T319 152 aa24■■□□□ 1.43
UBE3D-204ENST00000430071 CD163L1Q9NR16 1453 aa23.99■■□□□ 1.43
UBE3D-204ENST00000430071 CPDO75976 1380 aa23.99■■□□□ 1.43
UBE3D-204ENST00000430071 KRT27Q7Z3Y8 459 aa23.99■■□□□ 1.43
UBE3D-204ENST00000430071 SPATA31A1Q5TZJ5 1347 aa23.98■■□□□ 1.43
UBE3D-204ENST00000430071 ZBTB7CA1YPR0 619 aa23.97■■□□□ 1.43
UBE3D-204ENST00000430071 ZRANB1Q9UGI0 708 aa23.97■■□□□ 1.43
UBE3D-204ENST00000430071 ST20-MTHFSA0A0A6YYL1 179 aa23.96■■□□□ 1.43
UBE3D-204ENST00000430071 LARP1Q6PKG0 1096 aaKnown RBP23.96■■□□□ 1.43
UBE3D-204ENST00000430071 TESK2Q96S53 571 aa23.96■■□□□ 1.43
UBE3D-204ENST00000430071 USP35Q9P2H5 1018 aa23.96■■□□□ 1.43
UBE3D-204ENST00000430071 KTN1Q86UP2 1357 aaKnown RBP23.96■■□□□ 1.43
UBE3D-204ENST00000430071 ZNF692Q9BU19 519 aaPredicted RBP23.95■■□□□ 1.42
UBE3D-204ENST00000430071 SLC12A5Q9H2X9 1139 aa23.95■■□□□ 1.42
UBE3D-204ENST00000430071 EVA1CP58658 441 aa23.93■■□□□ 1.42
UBE3D-204ENST00000430071 DEFB132Q7Z7B7 95 aa23.93■■□□□ 1.42
UBE3D-204ENST00000430071 SOX12O15370 315 aa23.92■■□□□ 1.42
UBE3D-204ENST00000430071 TMC1Q8TDI8 760 aa23.92■■□□□ 1.42
UBE3D-204ENST00000430071 BLMP54132 1417 aaPredicted RBP23.92■■□□□ 1.42
UBE3D-204ENST00000430071 COL5A2P05997 1499 aaPredicted RBP23.92■■□□□ 1.42
UBE3D-204ENST00000430071 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.91■■□□□ 1.42
UBE3D-204ENST00000430071 CCDC125Q86Z20 511 aa23.91■■□□□ 1.42
UBE3D-204ENST00000430071 AXIN2Q9Y2T1 843 aa23.91■■□□□ 1.42
UBE3D-204ENST00000430071 USP54Q70EL1 1684 aa23.9■■□□□ 1.42
UBE3D-204ENST00000430071 TTC21AQ8NDW8 1320 aa23.9■■□□□ 1.42
UBE3D-204ENST00000430071 NFAT5O94916 1531 aa23.89■■□□□ 1.42
UBE3D-204ENST00000430071 LTN1O94822 1766 aa23.89■■□□□ 1.41
UBE3D-204ENST00000430071 TNS1Q9HBL0 1735 aaKnown RBP23.88■■□□□ 1.41
UBE3D-204ENST00000430071 NME9Q86XW9 330 aa23.88■■□□□ 1.41
UBE3D-204ENST00000430071 AATKQ6ZMQ8 1374 aa23.87■■□□□ 1.41
UBE3D-204ENST00000430071 WNK3Q9BYP7 1800 aa23.87■■□□□ 1.41
UBE3D-204ENST00000430071 RGPD1P0DJD0 1748 aa23.86■■□□□ 1.41
UBE3D-204ENST00000430071 A0A1W2PP64 1363 aa23.86■■□□□ 1.41
UBE3D-204ENST00000430071 ARHGEF25Q86VW2 580 aa23.86■■□□□ 1.41
UBE3D-204ENST00000430071 PARP4Q9UKK3 1724 aaKnown RBP23.85■■□□□ 1.41
UBE3D-204ENST00000430071 USP47Q96K76 1375 aa23.84■■□□□ 1.41
UBE3D-204ENST00000430071 BARGINQ6ZT62 677 aa23.84■■□□□ 1.41
UBE3D-204ENST00000430071 TCP11L2Q8N4U5 519 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms