RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 TRPM1Q7Z4N2 1603 aa24.73■■□□□ 1.55
TRIM39-209ENST00000428728 EP400Q96L91 3159 aa24.72■■□□□ 1.55
TRIM39-209ENST00000428728 VPS72Q15906 364 aa24.72■■□□□ 1.55
TRIM39-209ENST00000428728 CDK19Q9BWU1 502 aa24.72■■□□□ 1.55
TRIM39-209ENST00000428728 FAM83GA6ND36 823 aa24.71■■□□□ 1.55
TRIM39-209ENST00000428728 SEPT12Q8IYM1 358 aa24.66■■□□□ 1.54
TRIM39-209ENST00000428728 BTG4Q9NY30 223 aa24.66■■□□□ 1.54
TRIM39-209ENST00000428728 POLR3AO14802 1390 aaPredicted RBP24.66■■□□□ 1.54
TRIM39-209ENST00000428728 CENPJQ9HC77 1338 aaPredicted RBP24.65■■□□□ 1.54
TRIM39-209ENST00000428728 ACEP12821 1306 aa24.64■■□□□ 1.54
TRIM39-209ENST00000428728 L3MBTL2Q969R5 705 aa24.64■■□□□ 1.54
TRIM39-209ENST00000428728 NRKQ7Z2Y5 1582 aa24.63■■□□□ 1.53
TRIM39-209ENST00000428728 A0A0G2JS52 829 aa24.63■■□□□ 1.53
TRIM39-209ENST00000428728 MYT1Q01538 1121 aa24.63■■□□□ 1.53
TRIM39-209ENST00000428728 SIN3AQ96ST3 1273 aa24.63■■□□□ 1.53
TRIM39-209ENST00000428728 CCDC61Q9Y6R9 512 aa24.63■■□□□ 1.53
TRIM39-209ENST00000428728 PPIP5K1Q6PFW1 1433 aa24.62■■□□□ 1.53
TRIM39-209ENST00000428728 SRPK2P78362 688 aaKnown RBP24.62■■□□□ 1.53
TRIM39-209ENST00000428728 NUTM2GQ5VZR2 741 aa24.62■■□□□ 1.53
TRIM39-209ENST00000428728 PRDM11Q9NQV5 511 aa24.62■■□□□ 1.53
TRIM39-209ENST00000428728 BLMP54132 1417 aaPredicted RBP24.61■■□□□ 1.53
TRIM39-209ENST00000428728 KIAA0232Q92628 1395 aa24.6■■□□□ 1.53
TRIM39-209ENST00000428728 NEUROD1Q13562 356 aa24.6■■□□□ 1.53
TRIM39-209ENST00000428728 CCDC125Q86Z20 511 aa24.6■■□□□ 1.53
TRIM39-209ENST00000428728 THSD7AQ9UPZ6 1657 aa24.59■■□□□ 1.53
TRIM39-209ENST00000428728 FAM98CQ17RN3 349 aaKnown RBP24.59■■□□□ 1.53
TRIM39-209ENST00000428728 NBPF8Q3BBV2 869 aa24.59■■□□□ 1.53
TRIM39-209ENST00000428728 CABP2Q9NPB3 220 aa24.58■■□□□ 1.53
TRIM39-209ENST00000428728 PLEKHG3A1L390 1219 aa24.57■■□□□ 1.52
TRIM39-209ENST00000428728 ONECUT3O60422 494 aaPredicted RBP24.57■■□□□ 1.52
TRIM39-209ENST00000428728 CHRNA2Q15822 529 aa24.57■■□□□ 1.52
TRIM39-209ENST00000428728 KRT27Q7Z3Y8 459 aa24.57■■□□□ 1.52
TRIM39-209ENST00000428728 ZC3H6P61129 1189 aaKnown RBP24.55■■□□□ 1.52
TRIM39-209ENST00000428728 RGPD1P0DJD0 1748 aa24.55■■□□□ 1.52
TRIM39-209ENST00000428728 ROCK2O75116 1388 aaKnown RBP24.54■■□□□ 1.52
TRIM39-209ENST00000428728 LMO7Q8WWI1 1683 aa24.54■■□□□ 1.52
TRIM39-209ENST00000428728 SPATA31A5Q5VU36 1347 aa24.54■■□□□ 1.52
TRIM39-209ENST00000428728 SPATA31A7Q8IWB4 1347 aa24.54■■□□□ 1.52
TRIM39-209ENST00000428728 AKAP12Q02952 1782 aa24.54■■□□□ 1.52
TRIM39-209ENST00000428728 ABTB2Q8N961 1025 aa24.53■■□□□ 1.52
TRIM39-209ENST00000428728 SF3B2Q13435 895 aaKnown RBP24.52■■□□□ 1.52
TRIM39-209ENST00000428728 ZRANB1Q9UGI0 708 aa24.52■■□□□ 1.52
TRIM39-209ENST00000428728 PIK3C2AO00443 1686 aa24.51■■□□□ 1.51
TRIM39-209ENST00000428728 STRN4Q9NRL3 753 aa24.51■■□□□ 1.51
TRIM39-209ENST00000428728 DEFB132Q7Z7B7 95 aa24.5■■□□□ 1.51
TRIM39-209ENST00000428728 TNS1Q9HBL0 1735 aaKnown RBP24.49■■□□□ 1.51
TRIM39-209ENST00000428728 USP19O94966 1318 aa24.49■■□□□ 1.51
TRIM39-209ENST00000428728 USP6P35125 1406 aa24.49■■□□□ 1.51
TRIM39-209ENST00000428728 CAMTA1Q9Y6Y1 1673 aa24.49■■□□□ 1.51
TRIM39-209ENST00000428728 SSH2Q76I76 1423 aa24.47■■□□□ 1.51
TRIM39-209ENST00000428728 EVC2Q86UK5 1308 aa24.47■■□□□ 1.51
TRIM39-209ENST00000428728 CABP1Q9NZU7 370 aa24.47■■□□□ 1.51
TRIM39-209ENST00000428728 SPATA31A1Q5TZJ5 1347 aa24.46■■□□□ 1.51
TRIM39-209ENST00000428728 FAM182BQ5T319 152 aa24.46■■□□□ 1.51
TRIM39-209ENST00000428728 NLRP13Q86W25 1043 aa24.45■■□□□ 1.5
TRIM39-209ENST00000428728 SLIT3O75094 1523 aa24.45■■□□□ 1.5
TRIM39-209ENST00000428728 BRD4O60885 1362 aaPredicted RBP24.44■■□□□ 1.5
TRIM39-209ENST00000428728 CPDO75976 1380 aa24.44■■□□□ 1.5
TRIM39-209ENST00000428728 USP35Q9P2H5 1018 aa24.43■■□□□ 1.5
TRIM39-209ENST00000428728 MON2Q7Z3U7 1717 aa24.43■■□□□ 1.5
TRIM39-209ENST00000428728 RGPD5Q99666 1765 aa24.42■■□□□ 1.5
TRIM39-209ENST00000428728 EVA1CP58658 441 aa24.42■■□□□ 1.5
TRIM39-209ENST00000428728 ZBTB7CA1YPR0 619 aa24.41■■□□□ 1.5
TRIM39-209ENST00000428728 GCP02774 474 aa24.41■■□□□ 1.5
TRIM39-209ENST00000428728 COL5A2P05997 1499 aaPredicted RBP24.4■■□□□ 1.5
TRIM39-209ENST00000428728 WNK3Q9BYP7 1800 aa24.4■■□□□ 1.5
TRIM39-209ENST00000428728 PARP4Q9UKK3 1724 aaKnown RBP24.39■■□□□ 1.5
TRIM39-209ENST00000428728 BAG6P46379 1132 aa24.39■■□□□ 1.49
TRIM39-209ENST00000428728 NLRP6P59044 892 aa24.39■■□□□ 1.49
TRIM39-209ENST00000428728 LARP1Q6PKG0 1096 aaKnown RBP24.39■■□□□ 1.49
TRIM39-209ENST00000428728 COL18A1P39060 1754 aa24.39■■□□□ 1.49
TRIM39-209ENST00000428728 TONSLQ96HA7 1378 aa24.38■■□□□ 1.49
TRIM39-209ENST00000428728 CARD11Q9BXL7 1154 aa24.34■■□□□ 1.49
TRIM39-209ENST00000428728 LRRC37A3O60309 1634 aa24.33■■□□□ 1.49
TRIM39-209ENST00000428728 BARGINQ6ZT62 677 aa24.33■■□□□ 1.49
TRIM39-209ENST00000428728 SBNO2Q9Y2G9 1366 aa24.32■■□□□ 1.48
TRIM39-209ENST00000428728 EN1Q05925 392 aaPredicted RBP24.32■■□□□ 1.48
TRIM39-209ENST00000428728 TCP11L2Q8N4U5 519 aa24.32■■□□□ 1.48
TRIM39-209ENST00000428728 CRB1P82279 1406 aa24.32■■□□□ 1.48
TRIM39-209ENST00000428728 CPSF1Q10570 1443 aaKnown RBP24.32■■□□□ 1.48
TRIM39-209ENST00000428728 TTC21BQ7Z4L5 1316 aa24.32■■□□□ 1.48
TRIM39-209ENST00000428728 KTN1Q86UP2 1357 aaKnown RBP24.31■■□□□ 1.48
TRIM39-209ENST00000428728 USP54Q70EL1 1684 aa24.3■■□□□ 1.48
TRIM39-209ENST00000428728 AATKQ6ZMQ8 1374 aa24.3■■□□□ 1.48
TRIM39-209ENST00000428728 DISP2A7MBM2 1401 aa24.3■■□□□ 1.48
TRIM39-209ENST00000428728 LRP5O75197 1615 aa24.3■■□□□ 1.48
TRIM39-209ENST00000428728 LTN1O94822 1766 aa24.29■■□□□ 1.48
TRIM39-209ENST00000428728 SOX12O15370 315 aa24.29■■□□□ 1.48
TRIM39-209ENST00000428728 PDE3BQ13370 1112 aa24.29■■□□□ 1.48
TRIM39-209ENST00000428728 FAM196AQ6ZSG2 479 aa24.29■■□□□ 1.48
TRIM39-209ENST00000428728 ZNF692Q9BU19 519 aaPredicted RBP24.29■■□□□ 1.48
TRIM39-209ENST00000428728 RREB1Q92766 1687 aa24.29■■□□□ 1.48
TRIM39-209ENST00000428728 NFAT5O94916 1531 aa24.29■■□□□ 1.48
TRIM39-209ENST00000428728 TRIM37O94972 964 aa24.28■■□□□ 1.48
TRIM39-209ENST00000428728 TTC21AQ8NDW8 1320 aa24.28■■□□□ 1.48
TRIM39-209ENST00000428728 SBF2Q86WG5 1849 aa24.28■■□□□ 1.48
TRIM39-209ENST00000428728 PSDA5PKW4 1024 aaPredicted RBP24.27■■□□□ 1.48
TRIM39-209ENST00000428728 THRAP3Q9Y2W1 955 aaKnown RBP24.26■■□□□ 1.47
TRIM39-209ENST00000428728 NUP188Q5SRE5 1749 aa24.26■■□□□ 1.47
TRIM39-209ENST00000428728 PEAK1Q9H792 1746 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms