RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 PITPNM1O00562 1244 aa12.8□□□□□ -0.36
HDAC1-202ENST00000428704 NBPF8Q3BBV2 869 aa12.8□□□□□ -0.36
HDAC1-202ENST00000428704 NBPF14Q5TI25 921 aa12.8□□□□□ -0.36
HDAC1-202ENST00000428704 KIF1BO60333 1816 aa12.79□□□□□ -0.36
HDAC1-202ENST00000428704 KCNQ2O43526 872 aa12.79□□□□□ -0.36
HDAC1-202ENST00000428704 CABLES1Q8TDN4 633 aa12.79□□□□□ -0.36
HDAC1-202ENST00000428704 FBXO3Q9UK99 471 aa12.79□□□□□ -0.36
HDAC1-202ENST00000428704 APBA3O96018 575 aa12.78□□□□□ -0.36
HDAC1-202ENST00000428704 CLEC11AQ9Y240 323 aa12.78□□□□□ -0.36
HDAC1-202ENST00000428704 PARD3Q8TEW0 1356 aa12.78□□□□□ -0.36
HDAC1-202ENST00000428704 CCDC144AA2RUR9 1427 aa12.78□□□□□ -0.36
HDAC1-202ENST00000428704 ADGRB2O60241 1585 aa12.77□□□□□ -0.36
HDAC1-202ENST00000428704 TRIM37O94972 964 aa12.77□□□□□ -0.37
HDAC1-202ENST00000428704 KRT28Q7Z3Y7 464 aa12.77□□□□□ -0.37
HDAC1-202ENST00000428704 NEXMIFQ5QGS0 1516 aa12.77□□□□□ -0.37
HDAC1-202ENST00000428704 CDC42BPGQ6DT37 1551 aa12.77□□□□□ -0.37
HDAC1-202ENST00000428704 FAM83GA6ND36 823 aa12.76□□□□□ -0.37
HDAC1-202ENST00000428704 PLCH1Q4KWH8 1693 aa12.75□□□□□ -0.37
HDAC1-202ENST00000428704 LMOD2Q6P5Q4 547 aa12.75□□□□□ -0.37
HDAC1-202ENST00000428704 PRAG1Q86YV5 1406 aa12.75□□□□□ -0.37
HDAC1-202ENST00000428704 NWD2Q9ULI1 1742 aa12.74□□□□□ -0.37
HDAC1-202ENST00000428704 TNS3Q68CZ2 1445 aa12.74□□□□□ -0.37
HDAC1-202ENST00000428704 FAM196AQ6ZSG2 479 aa12.74□□□□□ -0.37
HDAC1-202ENST00000428704 BTG4Q9NY30 223 aa12.74□□□□□ -0.37
HDAC1-202ENST00000428704 TNS1Q9HBL0 1735 aaKnown RBP12.74□□□□□ -0.37
HDAC1-202ENST00000428704 PSME1Q06323 249 aa12.73□□□□□ -0.37
HDAC1-202ENST00000428704 PPLO60437 1756 aa12.73□□□□□ -0.37
HDAC1-202ENST00000428704 UTRNP46939 3433 aa12.72□□□□□ -0.37
HDAC1-202ENST00000428704 IFT172Q9UG01 1749 aa12.72□□□□□ -0.37
HDAC1-202ENST00000428704 VGFO15240 615 aaPredicted RBP12.72□□□□□ -0.37
HDAC1-202ENST00000428704 CAMTA1Q9Y6Y1 1673 aa12.72□□□□□ -0.37
HDAC1-202ENST00000428704 SPATA31A5Q5VU36 1347 aa12.71□□□□□ -0.37
HDAC1-202ENST00000428704 SPATA31A7Q8IWB4 1347 aa12.71□□□□□ -0.37
HDAC1-202ENST00000428704 ARHGEF10O15013 1369 aa12.7□□□□□ -0.38
HDAC1-202ENST00000428704 CEP350Q5VT06 3117 aa12.7□□□□□ -0.38
HDAC1-202ENST00000428704 GIGYF1O75420 1035 aaPredicted RBP12.7□□□□□ -0.38
HDAC1-202ENST00000428704 CHRDL2Q6WN34 429 aa12.7□□□□□ -0.38
HDAC1-202ENST00000428704 PRR29P0C7W0 189 aa12.69□□□□□ -0.38
HDAC1-202ENST00000428704 CCER1Q8TC90 406 aaPredicted RBP12.69□□□□□ -0.38
HDAC1-202ENST00000428704 RAB3GAP2Q9H2M9 1393 aa12.69□□□□□ -0.38
HDAC1-202ENST00000428704 SBNO1A3KN83 1393 aa12.68□□□□□ -0.38
HDAC1-202ENST00000428704 KIF1AQ12756 1690 aa12.67□□□□□ -0.38
HDAC1-202ENST00000428704 WAPLQ7Z5K2 1190 aa12.67□□□□□ -0.38
HDAC1-202ENST00000428704 PHF8Q9UPP1 1060 aa12.67□□□□□ -0.38
HDAC1-202ENST00000428704 SPATA31E1Q6ZUB1 1445 aa12.66□□□□□ -0.38
HDAC1-202ENST00000428704 MPHOSPH9Q99550 1183 aa12.66□□□□□ -0.38
HDAC1-202ENST00000428704 STK26Q9P289 416 aa12.66□□□□□ -0.38
HDAC1-202ENST00000428704 THSD7AQ9UPZ6 1657 aa12.66□□□□□ -0.38
HDAC1-202ENST00000428704 NUP188Q5SRE5 1749 aa12.65□□□□□ -0.38
HDAC1-202ENST00000428704 NRAPQ86VF7 1730 aa12.65□□□□□ -0.38
HDAC1-202ENST00000428704 RREB1Q92766 1687 aa12.65□□□□□ -0.38
HDAC1-202ENST00000428704 NRKQ7Z2Y5 1582 aa12.64□□□□□ -0.39
HDAC1-202ENST00000428704 PDE3BQ13370 1112 aa12.64□□□□□ -0.39
HDAC1-202ENST00000428704 ZBTB7AO95365 584 aa12.63□□□□□ -0.39
HDAC1-202ENST00000428704 SPATA31A1Q5TZJ5 1347 aa12.62□□□□□ -0.39
HDAC1-202ENST00000428704 ABCA3Q99758 1704 aa12.62□□□□□ -0.39
HDAC1-202ENST00000428704 SYT17Q9BSW7 474 aa12.62□□□□□ -0.39
HDAC1-202ENST00000428704 FHDC1Q9C0D6 1143 aaPredicted RBP12.62□□□□□ -0.39
HDAC1-202ENST00000428704 PLEKHH1Q9ULM0 1364 aa12.61□□□□□ -0.39
HDAC1-202ENST00000428704 PRDM11Q9NQV5 511 aa12.61□□□□□ -0.39
HDAC1-202ENST00000428704 COL14A1Q05707 1796 aaKnown RBP12.61□□□□□ -0.39
HDAC1-202ENST00000428704 RPGRIP1LQ68CZ1 1315 aa12.61□□□□□ -0.39
HDAC1-202ENST00000428704 CLSPNQ9HAW4 1339 aa12.61□□□□□ -0.39
HDAC1-202ENST00000428704 ACIN1Q9UKV3 1341 aaKnown RBP12.61□□□□□ -0.39
HDAC1-202ENST00000428704 NRXN1Q9ULB1 1477 aa12.6□□□□□ -0.39
HDAC1-202ENST00000428704 ANO8Q9HCE9 1232 aaPredicted RBP12.6□□□□□ -0.39
HDAC1-202ENST00000428704 STRN4Q9NRL3 753 aa12.6□□□□□ -0.39
HDAC1-202ENST00000428704 TECPR2O15040 1411 aa12.6□□□□□ -0.39
HDAC1-202ENST00000428704 FMN2Q9NZ56 1722 aa12.59□□□□□ -0.39
HDAC1-202ENST00000428704 PTGER2P43116 358 aa12.59□□□□□ -0.39
HDAC1-202ENST00000428704 VASPP50552 380 aaPredicted RBP12.59□□□□□ -0.39
HDAC1-202ENST00000428704 FXR2P51116 673 aaKnown RBP eCLIP12.59□□□□□ -0.393e-6■□□□□ 8
HDAC1-202ENST00000428704 PDGFDQ9GZP0 370 aaPredicted RBP12.59□□□□□ -0.39
HDAC1-202ENST00000428704 USP35Q9P2H5 1018 aa12.59□□□□□ -0.39
HDAC1-202ENST00000428704 PMFBP1Q8TBY8 1022 aa12.58□□□□□ -0.4
HDAC1-202ENST00000428704 BCL11BQ9C0K0 894 aaPredicted RBP12.58□□□□□ -0.4
HDAC1-202ENST00000428704 MYOM1P52179 1685 aa12.57□□□□□ -0.4
HDAC1-202ENST00000428704 KNDC1Q76NI1 1749 aa12.57□□□□□ -0.4
HDAC1-202ENST00000428704 ABCC11Q96J66 1382 aa12.56□□□□□ -0.4
HDAC1-202ENST00000428704 ANKRD30BQ9BXX2 1392 aa12.56□□□□□ -0.4
HDAC1-202ENST00000428704 PIK3C2GO75747 1445 aa12.56□□□□□ -0.4
HDAC1-202ENST00000428704 GPR162Q16538 588 aa12.56□□□□□ -0.4
HDAC1-202ENST00000428704 ADGRF5Q8IZF2 1346 aa12.56□□□□□ -0.4
HDAC1-202ENST00000428704 BARGINQ6ZT62 677 aa12.55□□□□□ -0.4
HDAC1-202ENST00000428704 GPRASP1Q5JY77 1395 aa12.55□□□□□ -0.4
HDAC1-202ENST00000428704 DLC1Q96QB1 1528 aa12.54□□□□□ -0.4
HDAC1-202ENST00000428704 EVA1CP58658 441 aa12.54□□□□□ -0.4
HDAC1-202ENST00000428704 CHRNA2Q15822 529 aa12.54□□□□□ -0.4
HDAC1-202ENST00000428704 TMEM132EQ6IEE7 984 aa12.54□□□□□ -0.4
HDAC1-202ENST00000428704 MIER1Q8N108 512 aa12.54□□□□□ -0.4
HDAC1-202ENST00000428704 PIP4P2Q8N4L2 257 aa12.54□□□□□ -0.4
HDAC1-202ENST00000428704 CASZ1Q86V15 1759 aa12.53□□□□□ -0.4
HDAC1-202ENST00000428704 C11orf95C9JLR9 678 aaPredicted RBP12.53□□□□□ -0.4
HDAC1-202ENST00000428704 PLSCR1O15162 318 aa12.53□□□□□ -0.4
HDAC1-202ENST00000428704 RGL3Q3MIN7 710 aa12.53□□□□□ -0.4
HDAC1-202ENST00000428704 KIAA0232Q92628 1395 aa12.53□□□□□ -0.4
HDAC1-202ENST00000428704 PAK3O75914 559 aaPredicted RBP12.52□□□□□ -0.41
HDAC1-202ENST00000428704 PLCD3Q8N3E9 789 aa12.52□□□□□ -0.41
HDAC1-202ENST00000428704 ARXQ96QS3 562 aa12.52□□□□□ -0.41
HDAC1-202ENST00000428704 MTFR1LQ9H019 292 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms