RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 CDK12Q9NYV4 1490 aaPredicted RBP13.46□□□□□ -0.25
TRIM39-208ENST00000428555 SLIT2O94813 1529 aa13.45□□□□□ -0.26
TRIM39-208ENST00000428555 BTG4Q9NY30 223 aa13.45□□□□□ -0.26
TRIM39-208ENST00000428555 CCDC9Q9Y3X0 531 aaKnown RBP13.45□□□□□ -0.26
TRIM39-208ENST00000428555 RGS12O14924 1447 aa13.45□□□□□ -0.26
TRIM39-208ENST00000428555 PPIP5K1Q6PFW1 1433 aa13.45□□□□□ -0.26
TRIM39-208ENST00000428555 ZC3H6P61129 1189 aaKnown RBP13.44□□□□□ -0.26
TRIM39-208ENST00000428555 VPS72Q15906 364 aa13.44□□□□□ -0.26
TRIM39-208ENST00000428555 TRPM1Q7Z4N2 1603 aa13.42□□□□□ -0.26
TRIM39-208ENST00000428555 CHRNA2Q15822 529 aa13.42□□□□□ -0.26
TRIM39-208ENST00000428555 NLRP13Q86W25 1043 aa13.42□□□□□ -0.26
TRIM39-208ENST00000428555 PRDM11Q9NQV5 511 aa13.42□□□□□ -0.26
TRIM39-208ENST00000428555 ZNF692Q9BU19 519 aaPredicted RBP13.41□□□□□ -0.26
TRIM39-208ENST00000428555 TRPM3Q9HCF6 1732 aaPredicted RBP13.4□□□□□ -0.26
TRIM39-208ENST00000428555 ST20-MTHFSA0A0A6YYL1 179 aa13.4□□□□□ -0.26
TRIM39-208ENST00000428555 ONECUT3O60422 494 aaPredicted RBP13.4□□□□□ -0.26
TRIM39-208ENST00000428555 GCP02774 474 aa13.4□□□□□ -0.26
TRIM39-208ENST00000428555 NLRP6P59044 892 aa13.4□□□□□ -0.26
TRIM39-208ENST00000428555 SEPT12Q8IYM1 358 aa13.4□□□□□ -0.26
TRIM39-208ENST00000428555 KIAA0232Q92628 1395 aa13.4□□□□□ -0.26
TRIM39-208ENST00000428555 RALGAPBQ86X10 1494 aa13.4□□□□□ -0.26
TRIM39-208ENST00000428555 TMC1Q8TDI8 760 aa13.38□□□□□ -0.27
TRIM39-208ENST00000428555 SLC12A5Q9H2X9 1139 aa13.38□□□□□ -0.27
TRIM39-208ENST00000428555 TTC21BQ7Z4L5 1316 aa13.38□□□□□ -0.27
TRIM39-208ENST00000428555 ALS2Q96Q42 1657 aa13.37□□□□□ -0.27
TRIM39-208ENST00000428555 BRD4O60885 1362 aaPredicted RBP13.37□□□□□ -0.27
TRIM39-208ENST00000428555 EVA1CP58658 441 aa13.37□□□□□ -0.27
TRIM39-208ENST00000428555 FAM98CQ17RN3 349 aaKnown RBP13.37□□□□□ -0.27
TRIM39-208ENST00000428555 TESK2Q96S53 571 aa13.37□□□□□ -0.27
TRIM39-208ENST00000428555 STRN4Q9NRL3 753 aa13.37□□□□□ -0.27
TRIM39-208ENST00000428555 USP6P35125 1406 aa13.37□□□□□ -0.27
TRIM39-208ENST00000428555 QRICH2Q9H0J4 1663 aa13.37□□□□□ -0.27
TRIM39-208ENST00000428555 USP19O94966 1318 aa13.37□□□□□ -0.27
TRIM39-208ENST00000428555 ATAD2Q6PL18 1390 aa13.36□□□□□ -0.27
TRIM39-208ENST00000428555 ZBTB7CA1YPR0 619 aa13.36□□□□□ -0.27
TRIM39-208ENST00000428555 TIMELESSQ9UNS1 1208 aa13.36□□□□□ -0.27
TRIM39-208ENST00000428555 SPATA31A5Q5VU36 1347 aa13.36□□□□□ -0.27
TRIM39-208ENST00000428555 SPATA31A7Q8IWB4 1347 aa13.36□□□□□ -0.27
TRIM39-208ENST00000428555 SBNO2Q9Y2G9 1366 aa13.35□□□□□ -0.27
TRIM39-208ENST00000428555 A0A0G2JS52 829 aa13.35□□□□□ -0.27
TRIM39-208ENST00000428555 MYT1Q01538 1121 aa13.35□□□□□ -0.27
TRIM39-208ENST00000428555 CCER1Q8TC90 406 aaPredicted RBP13.35□□□□□ -0.27
TRIM39-208ENST00000428555 SSH2Q76I76 1423 aa13.35□□□□□ -0.27
TRIM39-208ENST00000428555 ITSN1Q15811 1721 aa13.35□□□□□ -0.27
TRIM39-208ENST00000428555 MARF1Q9Y4F3 1742 aaKnown RBP13.35□□□□□ -0.27
TRIM39-208ENST00000428555 CLSPNQ9HAW4 1339 aa13.35□□□□□ -0.27
TRIM39-208ENST00000428555 TOPAZ1Q8N9V7 1692 aa13.34□□□□□ -0.27
TRIM39-208ENST00000428555 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.34□□□□□ -0.27
TRIM39-208ENST00000428555 PUS7Q96PZ0 661 aaKnown RBP13.34□□□□□ -0.27
TRIM39-208ENST00000428555 ZRANB1Q9UGI0 708 aa13.34□□□□□ -0.27
TRIM39-208ENST00000428555 KTN1Q86UP2 1357 aaKnown RBP13.33□□□□□ -0.27
TRIM39-208ENST00000428555 GLI3P10071 1580 aa13.33□□□□□ -0.28
TRIM39-208ENST00000428555 KRT27Q7Z3Y8 459 aa13.33□□□□□ -0.28
TRIM39-208ENST00000428555 USP35Q9P2H5 1018 aa13.33□□□□□ -0.28
TRIM39-208ENST00000428555 EP400Q96L91 3159 aa13.32□□□□□ -0.28
TRIM39-208ENST00000428555 CPSF1Q10570 1443 aaKnown RBP13.32□□□□□ -0.28
TRIM39-208ENST00000428555 SOX12O15370 315 aa13.32□□□□□ -0.28
TRIM39-208ENST00000428555 SLC24A1O60721 1099 aa13.32□□□□□ -0.28
TRIM39-208ENST00000428555 LARP1Q6PKG0 1096 aaKnown RBP13.32□□□□□ -0.28
TRIM39-208ENST00000428555 HDGFL2Q7Z4V5 671 aaPredicted RBP13.32□□□□□ -0.28
TRIM39-208ENST00000428555 SPATA31A1Q5TZJ5 1347 aa13.32□□□□□ -0.28
TRIM39-208ENST00000428555 TTC21AQ8NDW8 1320 aa13.32□□□□□ -0.28
TRIM39-208ENST00000428555 CPDO75976 1380 aa13.32□□□□□ -0.28
TRIM39-208ENST00000428555 CCDC125Q86Z20 511 aa13.31□□□□□ -0.28
TRIM39-208ENST00000428555 TERF2IPQ9NYB0 399 aa13.31□□□□□ -0.28
TRIM39-208ENST00000428555 ABCA3Q99758 1704 aa13.3□□□□□ -0.28
TRIM39-208ENST00000428555 FAM182BQ5T319 152 aa13.3□□□□□ -0.28
TRIM39-208ENST00000428555 ARHGEF25Q86VW2 580 aa13.3□□□□□ -0.28
TRIM39-208ENST00000428555 NME9Q86XW9 330 aa13.3□□□□□ -0.28
TRIM39-208ENST00000428555 KCNH5Q8NCM2 988 aa13.3□□□□□ -0.28
TRIM39-208ENST00000428555 AXIN2Q9Y2T1 843 aa13.3□□□□□ -0.28
TRIM39-208ENST00000428555 COL14A1Q05707 1796 aaKnown RBP13.3□□□□□ -0.28
TRIM39-208ENST00000428555 TMF1P82094 1093 aa13.29□□□□□ -0.28
TRIM39-208ENST00000428555 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.29□□□□□ -0.28
TRIM39-208ENST00000428555 USP47Q96K76 1375 aa13.29□□□□□ -0.28
TRIM39-208ENST00000428555 PLCH1Q4KWH8 1693 aa13.28□□□□□ -0.28
TRIM39-208ENST00000428555 AATKQ6ZMQ8 1374 aa13.28□□□□□ -0.28
TRIM39-208ENST00000428555 CAMTA1Q9Y6Y1 1673 aa13.28□□□□□ -0.28
TRIM39-208ENST00000428555 NWD2Q9ULI1 1742 aa13.27□□□□□ -0.28
TRIM39-208ENST00000428555 TCP11L2Q8N4U5 519 aa13.27□□□□□ -0.29
TRIM39-208ENST00000428555 CD163L1Q9NR16 1453 aa13.27□□□□□ -0.29
TRIM39-208ENST00000428555 BARGINQ6ZT62 677 aa13.26□□□□□ -0.29
TRIM39-208ENST00000428555 DEFB132Q7Z7B7 95 aa13.26□□□□□ -0.29
TRIM39-208ENST00000428555 CRYBG1Q9Y4K1 1723 aa13.26□□□□□ -0.29
TRIM39-208ENST00000428555 A0A1W2PP64 1363 aa13.25□□□□□ -0.29
TRIM39-208ENST00000428555 USP31Q70CQ4 1352 aa13.25□□□□□ -0.29
TRIM39-208ENST00000428555 SF3B2Q13435 895 aaKnown RBP13.25□□□□□ -0.29
TRIM39-208ENST00000428555 PHRF1Q9P1Y6 1649 aaKnown RBP13.24□□□□□ -0.29
TRIM39-208ENST00000428555 PDE3BQ13370 1112 aa13.24□□□□□ -0.29
TRIM39-208ENST00000428555 TOM1L2Q6ZVM7 507 aa13.24□□□□□ -0.29
TRIM39-208ENST00000428555 THRAP3Q9Y2W1 955 aaKnown RBP13.24□□□□□ -0.29
TRIM39-208ENST00000428555 NRAPQ86VF7 1730 aa13.24□□□□□ -0.29
TRIM39-208ENST00000428555 NRKQ7Z2Y5 1582 aa13.24□□□□□ -0.29
TRIM39-208ENST00000428555 CSB-PGBD3P0DP91 1061 aa13.23□□□□□ -0.29
TRIM39-208ENST00000428555 CDCA8Q53HL2 280 aa13.23□□□□□ -0.29
TRIM39-208ENST00000428555 SLIT3O75094 1523 aa13.23□□□□□ -0.29
TRIM39-208ENST00000428555 BLMP54132 1417 aaPredicted RBP13.22□□□□□ -0.29
TRIM39-208ENST00000428555 EDC4Q6P2E9 1401 aaKnown RBP13.22□□□□□ -0.29
TRIM39-208ENST00000428555 COL5A2P05997 1499 aaPredicted RBP13.22□□□□□ -0.29
TRIM39-208ENST00000428555 PIK3C2AO00443 1686 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms