RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 RALGAPBQ86X10 1494 aa26.44■■□□□ 1.82
PSPC1-202ENST00000427943 COL14A1Q05707 1796 aaKnown RBP26.44■■□□□ 1.82
PSPC1-202ENST00000427943 ROCK2O75116 1388 aaKnown RBP26.44■■□□□ 1.82
PSPC1-202ENST00000427943 GJD4Q96KN9 370 aaPredicted RBP26.43■■□□□ 1.82
PSPC1-202ENST00000427943 BRWD3Q6RI45 1802 aa26.43■■□□□ 1.82
PSPC1-202ENST00000427943 POLR3AO14802 1390 aaPredicted RBP26.42■■□□□ 1.82
PSPC1-202ENST00000427943 SRPK2P78362 688 aaKnown RBP26.41■■□□□ 1.82
PSPC1-202ENST00000427943 TRIM26Q12899 539 aaPredicted RBP26.41■■□□□ 1.82
PSPC1-202ENST00000427943 CCDC61Q9Y6R9 512 aa26.41■■□□□ 1.82
PSPC1-202ENST00000427943 ACEP12821 1306 aa26.4■■□□□ 1.82
PSPC1-202ENST00000427943 PPIP5K1Q6PFW1 1433 aa26.39■■□□□ 1.82
PSPC1-202ENST00000427943 CABP2Q9NPB3 220 aa26.39■■□□□ 1.82
PSPC1-202ENST00000427943 ATAD2Q6PL18 1390 aa26.38■■□□□ 1.81
PSPC1-202ENST00000427943 FAM83GA6ND36 823 aa26.38■■□□□ 1.81
PSPC1-202ENST00000427943 NBPF8Q3BBV2 869 aa26.37■■□□□ 1.81
PSPC1-202ENST00000427943 PLEKHG3A1L390 1219 aa26.36■■□□□ 1.81
PSPC1-202ENST00000427943 TONSLQ96HA7 1378 aa26.34■■□□□ 1.81
PSPC1-202ENST00000427943 NRKQ7Z2Y5 1582 aa26.34■■□□□ 1.81
PSPC1-202ENST00000427943 NUTM2GQ5VZR2 741 aa26.34■■□□□ 1.81
PSPC1-202ENST00000427943 CCDC9Q9Y3X0 531 aaKnown RBP26.34■■□□□ 1.81
PSPC1-202ENST00000427943 VPS72Q15906 364 aa26.33■■□□□ 1.81
PSPC1-202ENST00000427943 EP400Q96L91 3159 aa26.32■■□□□ 1.8
PSPC1-202ENST00000427943 BTG4Q9NY30 223 aa26.31■■□□□ 1.8
PSPC1-202ENST00000427943 AKAP12Q02952 1782 aa26.3■■□□□ 1.8
PSPC1-202ENST00000427943 EVC2Q86UK5 1308 aa26.3■■□□□ 1.8
PSPC1-202ENST00000427943 PRDM11Q9NQV5 511 aa26.28■■□□□ 1.8
PSPC1-202ENST00000427943 KIAA0232Q92628 1395 aa26.28■■□□□ 1.8
PSPC1-202ENST00000427943 USP6P35125 1406 aa26.26■■□□□ 1.79
PSPC1-202ENST00000427943 ABTB2Q8N961 1025 aa26.26■■□□□ 1.79
PSPC1-202ENST00000427943 CABP1Q9NZU7 370 aa26.26■■□□□ 1.79
PSPC1-202ENST00000427943 PIK3C2AO00443 1686 aa26.25■■□□□ 1.79
PSPC1-202ENST00000427943 SEPT12Q8IYM1 358 aa26.25■■□□□ 1.79
PSPC1-202ENST00000427943 ZC3H6P61129 1189 aaKnown RBP26.24■■□□□ 1.79
PSPC1-202ENST00000427943 CHRNA2Q15822 529 aa26.24■■□□□ 1.79
PSPC1-202ENST00000427943 CARD11Q9BXL7 1154 aa26.24■■□□□ 1.79
PSPC1-202ENST00000427943 LMO7Q8WWI1 1683 aa26.22■■□□□ 1.79
PSPC1-202ENST00000427943 USP19O94966 1318 aa26.21■■□□□ 1.79
PSPC1-202ENST00000427943 A0A0G2JS52 829 aa26.21■■□□□ 1.79
PSPC1-202ENST00000427943 MYT1Q01538 1121 aa26.21■■□□□ 1.79
PSPC1-202ENST00000427943 BRD4O60885 1362 aaPredicted RBP26.2■■□□□ 1.78
PSPC1-202ENST00000427943 MON2Q7Z3U7 1717 aa26.19■■□□□ 1.78
PSPC1-202ENST00000427943 THSD7AQ9UPZ6 1657 aa26.19■■□□□ 1.78
PSPC1-202ENST00000427943 FAM98CQ17RN3 349 aaKnown RBP26.19■■□□□ 1.78
PSPC1-202ENST00000427943 SBNO2Q9Y2G9 1366 aa26.19■■□□□ 1.78
PSPC1-202ENST00000427943 ONECUT3O60422 494 aaPredicted RBP26.18■■□□□ 1.78
PSPC1-202ENST00000427943 NLRP13Q86W25 1043 aa26.18■■□□□ 1.78
PSPC1-202ENST00000427943 SPATA31A5Q5VU36 1347 aa26.17■■□□□ 1.78
PSPC1-202ENST00000427943 SPATA31A7Q8IWB4 1347 aa26.17■■□□□ 1.78
PSPC1-202ENST00000427943 STRN4Q9NRL3 753 aa26.17■■□□□ 1.78
PSPC1-202ENST00000427943 SLIT3O75094 1523 aa26.17■■□□□ 1.78
PSPC1-202ENST00000427943 CAMTA1Q9Y6Y1 1673 aa26.16■■□□□ 1.78
PSPC1-202ENST00000427943 SSH2Q76I76 1423 aa26.16■■□□□ 1.78
PSPC1-202ENST00000427943 CPDO75976 1380 aa26.15■■□□□ 1.78
PSPC1-202ENST00000427943 KRT27Q7Z3Y8 459 aa26.14■■□□□ 1.78
PSPC1-202ENST00000427943 GCP02774 474 aa26.12■■□□□ 1.77
PSPC1-202ENST00000427943 NLRP6P59044 892 aa26.12■■□□□ 1.77
PSPC1-202ENST00000427943 BLMP54132 1417 aaPredicted RBP26.12■■□□□ 1.77
PSPC1-202ENST00000427943 CPSF1Q10570 1443 aaKnown RBP26.11■■□□□ 1.77
PSPC1-202ENST00000427943 SPATA31A1Q5TZJ5 1347 aa26.11■■□□□ 1.77
PSPC1-202ENST00000427943 CCDC125Q86Z20 511 aa26.1■■□□□ 1.77
PSPC1-202ENST00000427943 RGPD5Q99666 1765 aa26.1■■□□□ 1.77
PSPC1-202ENST00000427943 ZBTB7CA1YPR0 619 aa26.09■■□□□ 1.77
PSPC1-202ENST00000427943 COL18A1P39060 1754 aa26.09■■□□□ 1.77
PSPC1-202ENST00000427943 KTN1Q86UP2 1357 aaKnown RBP26.08■■□□□ 1.77
PSPC1-202ENST00000427943 TTC21BQ7Z4L5 1316 aa26.08■■□□□ 1.77
PSPC1-202ENST00000427943 COL5A2P05997 1499 aaPredicted RBP26.07■■□□□ 1.76
PSPC1-202ENST00000427943 EVA1CP58658 441 aa26.07■■□□□ 1.76
PSPC1-202ENST00000427943 ZNF692Q9BU19 519 aaPredicted RBP26.07■■□□□ 1.76
PSPC1-202ENST00000427943 USP35Q9P2H5 1018 aa26.07■■□□□ 1.76
PSPC1-202ENST00000427943 RGPD1P0DJD0 1748 aa26.07■■□□□ 1.76
PSPC1-202ENST00000427943 CD163L1Q9NR16 1453 aa26.06■■□□□ 1.76
PSPC1-202ENST00000427943 USP54Q70EL1 1684 aa26.05■■□□□ 1.76
PSPC1-202ENST00000427943 FAM182BQ5T319 152 aa26.04■■□□□ 1.76
PSPC1-202ENST00000427943 LARP1Q6PKG0 1096 aaKnown RBP26.04■■□□□ 1.76
PSPC1-202ENST00000427943 TTC21AQ8NDW8 1320 aa26.04■■□□□ 1.76
PSPC1-202ENST00000427943 TNS1Q9HBL0 1735 aaKnown RBP26.03■■□□□ 1.76
PSPC1-202ENST00000427943 WNK3Q9BYP7 1800 aa26.03■■□□□ 1.76
PSPC1-202ENST00000427943 DEFB132Q7Z7B7 95 aa26.02■■□□□ 1.76
PSPC1-202ENST00000427943 TMC1Q8TDI8 760 aa26.02■■□□□ 1.76
PSPC1-202ENST00000427943 SOX12O15370 315 aa26.01■■□□□ 1.75
PSPC1-202ENST00000427943 NFAT5O94916 1531 aa26.01■■□□□ 1.75
PSPC1-202ENST00000427943 SF3B2Q13435 895 aaKnown RBP26.01■■□□□ 1.75
PSPC1-202ENST00000427943 PARP4Q9UKK3 1724 aaKnown RBP26■■□□□ 1.75
PSPC1-202ENST00000427943 AATKQ6ZMQ8 1374 aa26■■□□□ 1.75
PSPC1-202ENST00000427943 ST20-MTHFSA0A0A6YYL1 179 aa26■■□□□ 1.75
PSPC1-202ENST00000427943 LTN1O94822 1766 aa26■■□□□ 1.75
PSPC1-202ENST00000427943 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.99■■□□□ 1.75
PSPC1-202ENST00000427943 PCGF6Q9BYE7 350 aa25.99■■□□□ 1.75
PSPC1-202ENST00000427943 TESK2Q96S53 571 aa25.98■■□□□ 1.75
PSPC1-202ENST00000427943 SLC12A5Q9H2X9 1139 aa25.98■■□□□ 1.75
PSPC1-202ENST00000427943 CRB1P82279 1406 aa25.97■■□□□ 1.75
PSPC1-202ENST00000427943 ZRANB1Q9UGI0 708 aa25.97■■□□□ 1.75
PSPC1-202ENST00000427943 BARGINQ6ZT62 677 aa25.96■■□□□ 1.75
PSPC1-202ENST00000427943 HDGFL2Q7Z4V5 671 aaPredicted RBP25.96■■□□□ 1.75
PSPC1-202ENST00000427943 TCP11L2Q8N4U5 519 aa25.96■■□□□ 1.75
PSPC1-202ENST00000427943 A0A1W2PP64 1363 aa25.95■■□□□ 1.75
PSPC1-202ENST00000427943 KCNH5Q8NCM2 988 aa25.95■■□□□ 1.74
PSPC1-202ENST00000427943 LRRC37A3O60309 1634 aa25.95■■□□□ 1.74
PSPC1-202ENST00000427943 USP47Q96K76 1375 aa25.95■■□□□ 1.74
PSPC1-202ENST00000427943 NME9Q86XW9 330 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms