RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 HDGFL2Q7Z4V5 671 aaPredicted RBP13.89□□□□□ -0.19
CUX1-205ENST00000425244 GGNBP2Q9H3C7 697 aa13.89□□□□□ -0.19
CUX1-205ENST00000425244 ANKRD36BQ8N2N9 1353 aa13.89□□□□□ -0.19
CUX1-205ENST00000425244 KNDC1Q76NI1 1749 aa13.89□□□□□ -0.19
CUX1-205ENST00000425244 NEUROD2Q15784 382 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 SIRT1Q96EB6 747 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 BACH2Q9BYV9 841 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.88□□□□□ -0.19
CUX1-205ENST00000425244 MS4A1P11836 297 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 PUS7Q96PZ0 661 aaKnown RBP13.88□□□□□ -0.19
CUX1-205ENST00000425244 DMRT2Q9Y5R5 561 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 CGNL1Q0VF96 1302 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 PMFBP1Q8TBY8 1022 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 UBE2Q2Q8WVN8 375 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 CCDC61Q9Y6R9 512 aa13.88□□□□□ -0.19
CUX1-205ENST00000425244 PPIP5K1Q6PFW1 1433 aa13.87□□□□□ -0.19
CUX1-205ENST00000425244 PRR36Q9H6K5 1346 aa13.87□□□□□ -0.19
CUX1-205ENST00000425244 BCAR3O75815 825 aa13.87□□□□□ -0.19
CUX1-205ENST00000425244 DIP2AQ14689 1571 aa13.86□□□□□ -0.19
CUX1-205ENST00000425244 RRP7AQ9Y3A4 280 aaKnown RBP13.86□□□□□ -0.19
CUX1-205ENST00000425244 E9PSI1 815 aa13.86□□□□□ -0.19
CUX1-205ENST00000425244 EIF5BO60841 1220 aaKnown RBP13.85□□□□□ -0.19
CUX1-205ENST00000425244 TRMT2AQ8IZ69 625 aaKnown RBP13.84□□□□□ -0.19
CUX1-205ENST00000425244 PTCH1Q13635 1447 aa13.84□□□□□ -0.19
CUX1-205ENST00000425244 NKTRP30414 1462 aaKnown RBP13.84□□□□□ -0.19
CUX1-205ENST00000425244 CENPQQ7L2Z9 268 aaPredicted RBP13.83□□□□□ -0.19
CUX1-205ENST00000425244 NINLQ9Y2I6 1382 aa13.83□□□□□ -0.19
CUX1-205ENST00000425244 CD163L1Q9NR16 1453 aa13.83□□□□□ -0.19
CUX1-205ENST00000425244 CANXP27824 592 aaKnown RBP13.83□□□□□ -0.2
CUX1-205ENST00000425244 PROSER2Q86WR7 435 aaPredicted RBP13.83□□□□□ -0.2
CUX1-205ENST00000425244 KDM2BQ8NHM5 1336 aa13.83□□□□□ -0.2
CUX1-205ENST00000425244 POLR3AO14802 1390 aaPredicted RBP13.83□□□□□ -0.2
CUX1-205ENST00000425244 FYB1O15117 783 aa13.83□□□□□ -0.2
CUX1-205ENST00000425244 FBLN1P23142 703 aa13.83□□□□□ -0.2
CUX1-205ENST00000425244 PIK3R4Q99570 1358 aa13.83□□□□□ -0.2
CUX1-205ENST00000425244 MTHFSP49914 203 aa13.82□□□□□ -0.2
CUX1-205ENST00000425244 WWC1Q8IX03 1113 aa13.82□□□□□ -0.2
CUX1-205ENST00000425244 CHD2O14647 1828 aaKnown RBP13.82□□□□□ -0.2
CUX1-205ENST00000425244 XRN1Q8IZH2 1706 aaKnown RBP13.82□□□□□ -0.2
CUX1-205ENST00000425244 ATP7BP35670 1465 aa13.81□□□□□ -0.2
CUX1-205ENST00000425244 ACEP12821 1306 aa13.81□□□□□ -0.2
CUX1-205ENST00000425244 RGS3P49796 1198 aa13.81□□□□□ -0.2
CUX1-205ENST00000425244 NGDNQ8NEJ9 315 aaKnown RBP13.81□□□□□ -0.2
CUX1-205ENST00000425244 ZRANB1Q9UGI0 708 aa13.81□□□□□ -0.2
CUX1-205ENST00000425244 PPM1GO15355 546 aaPredicted RBP13.81□□□□□ -0.2
CUX1-205ENST00000425244 NME9Q86XW9 330 aa13.81□□□□□ -0.2
CUX1-205ENST00000425244 LMTK3Q96Q04 1460 aa13.81□□□□□ -0.2
CUX1-205ENST00000425244 SOX12O15370 315 aa13.8□□□□□ -0.2
CUX1-205ENST00000425244 RGPD8O14715 1765 aaPredicted RBP13.8□□□□□ -0.2
CUX1-205ENST00000425244 TCP11L2Q8N4U5 519 aa13.79□□□□□ -0.2
CUX1-205ENST00000425244 FRAT1Q92837 279 aaPredicted RBP13.79□□□□□ -0.2
CUX1-205ENST00000425244 CFAP53Q96M91 514 aa13.79□□□□□ -0.2
CUX1-205ENST00000425244 PLEKHG5O94827 1062 aa13.79□□□□□ -0.2
CUX1-205ENST00000425244 RUNDC1Q96C34 613 aa13.79□□□□□ -0.2
CUX1-205ENST00000425244 LAS1LQ9Y4W2 734 aaKnown RBP13.79□□□□□ -0.2
CUX1-205ENST00000425244 RTL5Q5HYW3 569 aaPredicted RBP13.78□□□□□ -0.2
CUX1-205ENST00000425244 DEKP35659 375 aaKnown RBP13.78□□□□□ -0.2
CUX1-205ENST00000425244 NGEFQ8N5V2 710 aa13.78□□□□□ -0.2
CUX1-205ENST00000425244 ESCO1Q5FWF5 840 aa13.77□□□□□ -0.2
CUX1-205ENST00000425244 PANK1Q8TE04 598 aa13.77□□□□□ -0.2
CUX1-205ENST00000425244 U2AF1L5P0DN76 240 aaPredicted RBP13.77□□□□□ -0.21
CUX1-205ENST00000425244 U2AF1Q01081 240 aaKnown RBP eCLIP13.77□□□□□ -0.215e-6■□□□□ 11.2
CUX1-205ENST00000425244 COG6Q9Y2V7 657 aa13.77□□□□□ -0.21
CUX1-205ENST00000425244 ADGRB2O60241 1585 aa13.76□□□□□ -0.21
CUX1-205ENST00000425244 NUTM2GQ5VZR2 741 aa13.76□□□□□ -0.21
CUX1-205ENST00000425244 NALCNQ8IZF0 1738 aa13.76□□□□□ -0.21
CUX1-205ENST00000425244 ZNF692Q9BU19 519 aaPredicted RBP13.76□□□□□ -0.21
CUX1-205ENST00000425244 BCL2L13Q9BXK5 485 aa13.76□□□□□ -0.21
CUX1-205ENST00000425244 CPSF1Q10570 1443 aaKnown RBP13.76□□□□□ -0.21
CUX1-205ENST00000425244 XPCQ01831 940 aaPredicted RBP13.74□□□□□ -0.21
CUX1-205ENST00000425244 CDC42BPGQ6DT37 1551 aa13.74□□□□□ -0.21
CUX1-205ENST00000425244 EDC4Q6P2E9 1401 aaKnown RBP13.74□□□□□ -0.21
CUX1-205ENST00000425244 USP32Q8NFA0 1604 aa13.74□□□□□ -0.21
CUX1-205ENST00000425244 PLEKHG3A1L390 1219 aa13.74□□□□□ -0.21
CUX1-205ENST00000425244 ITSN1Q15811 1721 aa13.73□□□□□ -0.21
CUX1-205ENST00000425244 U2SURPO15042 1029 aaKnown RBP13.73□□□□□ -0.21
CUX1-205ENST00000425244 FAM161AQ3B820 660 aa13.73□□□□□ -0.21
CUX1-205ENST00000425244 COG3Q96JB2 828 aa13.73□□□□□ -0.21
CUX1-205ENST00000425244 ORAI2Q96SN7 254 aa13.73□□□□□ -0.21
CUX1-205ENST00000425244 ZNF335Q9H4Z2 1342 aaPredicted RBP13.73□□□□□ -0.21
CUX1-205ENST00000425244 NSD2O96028 1365 aa13.73□□□□□ -0.21
CUX1-205ENST00000425244 TMEM94Q12767 1356 aa13.73□□□□□ -0.21
CUX1-205ENST00000425244 IGHDP01880 384 aa13.72□□□□□ -0.21
CUX1-205ENST00000425244 RRS1Q15050 365 aaKnown RBP13.72□□□□□ -0.21
CUX1-205ENST00000425244 TTC21BQ7Z4L5 1316 aa13.72□□□□□ -0.21
CUX1-205ENST00000425244 ADGRL3Q9HAR2 1447 aa13.72□□□□□ -0.21
CUX1-205ENST00000425244 PDE3AQ14432 1141 aa13.72□□□□□ -0.21
CUX1-205ENST00000425244 PHF8Q9UPP1 1060 aa13.72□□□□□ -0.21
CUX1-205ENST00000425244 SHPRHQ149N8 1683 aa13.72□□□□□ -0.21
CUX1-205ENST00000425244 FOXO3O43524 673 aa13.71□□□□□ -0.21
CUX1-205ENST00000425244 SLC4A3P48751 1232 aa13.71□□□□□ -0.21
CUX1-205ENST00000425244 RARSP54136 660 aaKnown RBP13.71□□□□□ -0.21
CUX1-205ENST00000425244 DDRGK1Q96HY6 314 aa13.71□□□□□ -0.21
CUX1-205ENST00000425244 STRCQ7RTU9 1775 aa13.71□□□□□ -0.21
CUX1-205ENST00000425244 ATF3P18847 181 aa13.71□□□□□ -0.21
CUX1-205ENST00000425244 CLUAP1Q96AJ1 413 aa13.71□□□□□ -0.21
CUX1-205ENST00000425244 KIF20BQ96Q89 1820 aa13.71□□□□□ -0.22
CUX1-205ENST00000425244 USP6P35125 1406 aa13.71□□□□□ -0.22
CUX1-205ENST00000425244 C8orf34Q49A92 452 aa13.71□□□□□ -0.22
CUX1-205ENST00000425244 LMOD2Q6P5Q4 547 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms