RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 FEZ2Q9UHY8 353 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-212ENST00000423061 EHBP1L1Q8N3D4 1523 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 CASQ1P31415 396 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 PSMD2Q13200 908 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 CXorf56Q9H5V9 222 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 PPP1R9BQ96SB3 815 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 MAPK8IP3Q9UPT6 1336 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 C16orf45Q96MC5 204 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-212ENST00000423061 FYCO1Q9BQS8 1478 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 SYAP1Q96A49 352 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-212ENST00000423061 G3BP2Q9UN86 482 aaKnown RBP4.09□□□□□ -1.75
SYNE1-212ENST00000423061 FBLN2P98095 1184 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 MCTP2Q6DN12 878 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 C8orf34Q49A92 452 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 IPO8O15397 1037 aaKnown RBP4.09□□□□□ -1.75
SYNE1-212ENST00000423061 SLFN14P0C7P3 912 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 CARD11Q9BXL7 1154 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 PDE6BP35913 854 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 SUDS3Q9H7L9 328 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-212ENST00000423061 TERF2Q15554 542 aa4.09□□□□□ -1.75
SYNE1-212ENST00000423061 PAIP2Q9BPZ3 127 aaKnown RBP4.09□□□□□ -1.75
SYNE1-212ENST00000423061 ZSCAN26Q16670 478 aa4.09□□□□□ -1.76
SYNE1-212ENST00000423061 FHOD3Q2V2M9 1422 aa4.09□□□□□ -1.76
SYNE1-212ENST00000423061 NAA25Q14CX7 972 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 SMG6Q86US8 1419 aaKnown RBP4.08□□□□□ -1.76
SYNE1-212ENST00000423061 EFCAB5A4FU69 1503 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 CCDC34Q96HJ3 373 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 TRMT1Q9NXH9 659 aaKnown RBP4.08□□□□□ -1.76
SYNE1-212ENST00000423061 CWC22Q9HCG8 908 aaKnown RBP4.08□□□□□ -1.76
SYNE1-212ENST00000423061 SH3BP1Q9Y3L3 701 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 MFSD4BQ5TF39 518 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 TERF2IPQ9NYB0 399 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 NEUROD2Q15784 382 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 KIF18AQ8NI77 898 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 SUPT6HQ7KZ85 1726 aaKnown RBP4.08□□□□□ -1.76
SYNE1-212ENST00000423061 ATP2B2Q01814 1243 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 LEKR1Q6ZMV7 388 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 RAI14Q9P0K7 980 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 PDE3BQ13370 1112 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 ANKRD65E5RJM6 399 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.08□□□□□ -1.76
SYNE1-212ENST00000423061 TIAM1Q13009 1591 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 PDZRN3Q9UPQ7 1066 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 CEP57Q86XR8 500 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 CCDC97Q96F63 343 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-212ENST00000423061 ATP2B1P20020 1258 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 TPM4P67936 248 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 CARMIL1Q5VZK9 1371 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 GUCY2CP25092 1073 aa4.08□□□□□ -1.76
SYNE1-212ENST00000423061 ISM2Q6H9L7 571 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 RABEP2Q9H5N1 569 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 IGHDP01880 384 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 BMS1Q14692 1282 aaKnown RBP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 NAA30Q147X3 362 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 FGD6Q6ZV73 1430 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 NUTM2GQ5VZR2 741 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 TBC1D32Q96NH3 1257 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 APBB1O00213 710 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 EGFL6Q8IUX8 553 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 CCDC146Q8IYE0 955 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 PNISRQ8TF01 805 aaKnown RBP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 PRDM2Q13029 1718 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 KIF4AO95239 1232 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 DONSONQ9NYP3 566 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 NF2P35240 595 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 ZNF397Q8NF99 534 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 TMCO5BA8MYB1 307 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 SYNJ1O43426 1573 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 HECW1Q76N89 1606 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 IRF6O14896 467 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 CT47B1P0C2W7 299 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 TSPY4P0CV99 314 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 TSPY10P0CW01 314 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 MMP14P50281 582 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 USP25Q9UHP3 1055 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 USP47Q96K76 1375 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 BAG4O95429 457 aaKnown RBP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 RNF187Q5TA31 235 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-212ENST00000423061 TRIM5Q9C035 493 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 SCP2P22307 547 aa4.07□□□□□ -1.76
SYNE1-212ENST00000423061 BRPF1P55201 1214 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-212ENST00000423061 CA8P35219 290 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 UACAQ9BZF9 1416 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 TTC36A6NLP5 189 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 CEP120Q8N960 986 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 CHAMP1Q96JM3 812 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 KIF2AO00139 706 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-212ENST00000423061 PTGS1P23219 599 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 NLRP13Q86W25 1043 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 CARD10Q9BWT7 1032 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 GOPCQ9HD26 462 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 CIZ1Q9ULV3 898 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-212ENST00000423061 RRP15Q9Y3B9 282 aaKnown RBP4.06□□□□□ -1.76
SYNE1-212ENST00000423061 ANTXR1Q9H6X2 564 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 MICALL1Q8N3F8 863 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 MCM2P49736 904 aa4.06□□□□□ -1.76
SYNE1-212ENST00000423061 NAIF1Q69YI7 327 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-212ENST00000423061 PCF11O94913 1555 aaKnown RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms