RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 EN1Q05925 392 aaPredicted RBP11.9□□□□□ -0.5
VIM-202ENST00000421459 NUDT16Q96DE0 195 aaKnown RBP11.9□□□□□ -0.5
VIM-202ENST00000421459 TRPM3Q9HCF6 1732 aaPredicted RBP11.89□□□□□ -0.51
VIM-202ENST00000421459 ADGRB2O60241 1585 aa11.89□□□□□ -0.51
VIM-202ENST00000421459 ZC3H6P61129 1189 aaKnown RBP11.89□□□□□ -0.51
VIM-202ENST00000421459 TULP4Q9NRJ4 1543 aa11.89□□□□□ -0.51
VIM-202ENST00000421459 SPATA31A5Q5VU36 1347 aa11.88□□□□□ -0.51
VIM-202ENST00000421459 SPATA31A7Q8IWB4 1347 aa11.88□□□□□ -0.51
VIM-202ENST00000421459 CDK19Q9BWU1 502 aa11.88□□□□□ -0.51
VIM-202ENST00000421459 PRDM11Q9NQV5 511 aa11.88□□□□□ -0.51
VIM-202ENST00000421459 NRAPQ86VF7 1730 aa11.87□□□□□ -0.51
VIM-202ENST00000421459 NWD2Q9ULI1 1742 aa11.87□□□□□ -0.51
VIM-202ENST00000421459 STRN4Q9NRL3 753 aa11.87□□□□□ -0.51
VIM-202ENST00000421459 ALS2Q96Q42 1657 aa11.87□□□□□ -0.51
VIM-202ENST00000421459 BAG6P46379 1132 aa11.86□□□□□ -0.51
VIM-202ENST00000421459 NBPF1Q3BBV0 1214 aa11.86□□□□□ -0.51
VIM-202ENST00000421459 USP35Q9P2H5 1018 aa11.86□□□□□ -0.51
VIM-202ENST00000421459 KIAA0232Q92628 1395 aa11.86□□□□□ -0.51
VIM-202ENST00000421459 HRCP23327 699 aa11.85□□□□□ -0.51
VIM-202ENST00000421459 R3HDM1Q15032 1099 aaKnown RBP11.85□□□□□ -0.51
VIM-202ENST00000421459 EZH2Q15910 746 aaKnown RBP11.85□□□□□ -0.51
VIM-202ENST00000421459 ACEP12821 1306 aa11.85□□□□□ -0.51
VIM-202ENST00000421459 SPATA31A1Q5TZJ5 1347 aa11.85□□□□□ -0.51
VIM-202ENST00000421459 ATP7BP35670 1465 aa11.84□□□□□ -0.51
VIM-202ENST00000421459 EIF3AQ14152 1382 aaKnown RBP11.84□□□□□ -0.51
VIM-202ENST00000421459 TRIM37O94972 964 aa11.84□□□□□ -0.51
VIM-202ENST00000421459 NBPF8Q3BBV2 869 aa11.84□□□□□ -0.51
VIM-202ENST00000421459 COL14A1Q05707 1796 aaKnown RBP11.84□□□□□ -0.51
VIM-202ENST00000421459 LARP1Q6PKG0 1096 aaKnown RBP11.82□□□□□ -0.52
VIM-202ENST00000421459 CRYBG1Q9Y4K1 1723 aa11.82□□□□□ -0.52
VIM-202ENST00000421459 EVA1CP58658 441 aa11.81□□□□□ -0.52
VIM-202ENST00000421459 ABTB2Q8N961 1025 aa11.81□□□□□ -0.52
VIM-202ENST00000421459 STAC3Q96MF2 364 aa11.81□□□□□ -0.52
VIM-202ENST00000421459 CABP2Q9NPB3 220 aa11.81□□□□□ -0.52
VIM-202ENST00000421459 CCDC61Q9Y6R9 512 aa11.81□□□□□ -0.52
VIM-202ENST00000421459 ARHGEF28Q8N1W1 1705 aaKnown RBP11.8□□□□□ -0.52
VIM-202ENST00000421459 PLEKHG3A1L390 1219 aa11.8□□□□□ -0.52
VIM-202ENST00000421459 APBA3O96018 575 aa11.8□□□□□ -0.52
VIM-202ENST00000421459 CAMKK2Q96RR4 588 aa11.8□□□□□ -0.52
VIM-202ENST00000421459 THSD7AQ9UPZ6 1657 aa11.8□□□□□ -0.52
VIM-202ENST00000421459 POLR3AO14802 1390 aaPredicted RBP11.79□□□□□ -0.52
VIM-202ENST00000421459 ZBTB7CA1YPR0 619 aa11.79□□□□□ -0.52
VIM-202ENST00000421459 SRPK2P78362 688 aaKnown RBP11.79□□□□□ -0.52
VIM-202ENST00000421459 FAM196AQ6ZSG2 479 aa11.78□□□□□ -0.52
VIM-202ENST00000421459 PHRF1Q9P1Y6 1649 aaKnown RBP11.78□□□□□ -0.52
VIM-202ENST00000421459 CAMTA1Q9Y6Y1 1673 aa11.78□□□□□ -0.52
VIM-202ENST00000421459 SSH2Q76I76 1423 aa11.77□□□□□ -0.52
VIM-202ENST00000421459 GCP02774 474 aa11.77□□□□□ -0.53
VIM-202ENST00000421459 PDE3BQ13370 1112 aa11.77□□□□□ -0.53
VIM-202ENST00000421459 BARGINQ6ZT62 677 aa11.76□□□□□ -0.53
VIM-202ENST00000421459 TCP11L2Q8N4U5 519 aa11.76□□□□□ -0.53
VIM-202ENST00000421459 CABP1Q9NZU7 370 aa11.76□□□□□ -0.53
VIM-202ENST00000421459 USP19O94966 1318 aa11.76□□□□□ -0.53
VIM-202ENST00000421459 PPIP5K1Q6PFW1 1433 aa11.76□□□□□ -0.53
VIM-202ENST00000421459 LRP5O75197 1615 aa11.75□□□□□ -0.53
VIM-202ENST00000421459 CENPJQ9HC77 1338 aaPredicted RBP11.75□□□□□ -0.53
VIM-202ENST00000421459 DISP2A7MBM2 1401 aa11.75□□□□□ -0.53
VIM-202ENST00000421459 NRKQ7Z2Y5 1582 aa11.75□□□□□ -0.53
VIM-202ENST00000421459 RGPD1P0DJD0 1748 aa11.74□□□□□ -0.53
VIM-202ENST00000421459 TNS1Q9HBL0 1735 aaKnown RBP11.74□□□□□ -0.53
VIM-202ENST00000421459 NLRP13Q86W25 1043 aa11.74□□□□□ -0.53
VIM-202ENST00000421459 TOPAZ1Q8N9V7 1692 aa11.74□□□□□ -0.53
VIM-202ENST00000421459 ITSN1Q15811 1721 aa11.74□□□□□ -0.53
VIM-202ENST00000421459 CPDO75976 1380 aa11.73□□□□□ -0.53
VIM-202ENST00000421459 NLRP6P59044 892 aa11.73□□□□□ -0.53
VIM-202ENST00000421459 PTF1AQ7RTS3 328 aa11.73□□□□□ -0.53
VIM-202ENST00000421459 L3MBTL2Q969R5 705 aa11.73□□□□□ -0.53
VIM-202ENST00000421459 SIN3AQ96ST3 1273 aa11.73□□□□□ -0.53
VIM-202ENST00000421459 AXIN2Q9Y2T1 843 aa11.72□□□□□ -0.53
VIM-202ENST00000421459 LMO7Q8WWI1 1683 aa11.71□□□□□ -0.53
VIM-202ENST00000421459 COL5A2P05997 1499 aaPredicted RBP11.71□□□□□ -0.53
VIM-202ENST00000421459 SOX12O15370 315 aa11.71□□□□□ -0.53
VIM-202ENST00000421459 NEUROD1Q13562 356 aa11.7□□□□□ -0.54
VIM-202ENST00000421459 THRAP3Q9Y2W1 955 aaKnown RBP11.7□□□□□ -0.54
VIM-202ENST00000421459 USP6P35125 1406 aa11.69□□□□□ -0.54
VIM-202ENST00000421459 TOM1L2Q6ZVM7 507 aa11.69□□□□□ -0.54
VIM-202ENST00000421459 NBPF14Q5TI25 921 aa11.68□□□□□ -0.54
VIM-202ENST00000421459 KIAA1210Q9ULL0 1709 aa11.68□□□□□ -0.54
VIM-202ENST00000421459 CRB1P82279 1406 aa11.68□□□□□ -0.54
VIM-202ENST00000421459 AATKQ6ZMQ8 1374 aa11.67□□□□□ -0.54
VIM-202ENST00000421459 TTC21BQ7Z4L5 1316 aa11.67□□□□□ -0.54
VIM-202ENST00000421459 DDB1Q16531 1140 aa11.67□□□□□ -0.54
VIM-202ENST00000421459 MARCH10Q8NA82 808 aaPredicted RBP11.67□□□□□ -0.54
VIM-202ENST00000421459 PDGFDQ9GZP0 370 aaPredicted RBP11.67□□□□□ -0.54
VIM-202ENST00000421459 ANO8Q9HCE9 1232 aaPredicted RBP11.67□□□□□ -0.54
VIM-202ENST00000421459 PARD3Q8TEW0 1356 aa11.67□□□□□ -0.54
VIM-202ENST00000421459 EVC2Q86UK5 1308 aa11.66□□□□□ -0.54
VIM-202ENST00000421459 ARHGEF25Q86VW2 580 aa11.66□□□□□ -0.54
VIM-202ENST00000421459 PROM2Q8N271 834 aa11.66□□□□□ -0.54
VIM-202ENST00000421459 SLIT3O75094 1523 aa11.65□□□□□ -0.54
VIM-202ENST00000421459 QRICH2Q9H0J4 1663 aa11.65□□□□□ -0.54
VIM-202ENST00000421459 NUP188Q5SRE5 1749 aa11.65□□□□□ -0.54
VIM-202ENST00000421459 RREB1Q92766 1687 aa11.65□□□□□ -0.55
VIM-202ENST00000421459 OVOS2A0A0G2JMS6 1433 aa11.64□□□□□ -0.55
VIM-202ENST00000421459 OVOS2A0A0J9YW53 1432 aa11.64□□□□□ -0.55
VIM-202ENST00000421459 OVOS2Q6IE36 1432 aa11.64□□□□□ -0.55
VIM-202ENST00000421459 KCNQ2O43526 872 aa11.64□□□□□ -0.55
VIM-202ENST00000421459 CSB-PGBD3P0DP91 1061 aa11.64□□□□□ -0.55
VIM-202ENST00000421459 PIK3C2AO00443 1686 aa11.64□□□□□ -0.55
VIM-202ENST00000421459 BRD4O60885 1362 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 210 ms