RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 RGS12O14924 1447 aa23.5■■□□□ 1.35
LINC00404-201ENST00000418660 UNC5CLQ8IV45 518 aa23.49■■□□□ 1.35
LINC00404-201ENST00000418660 EVC2Q86UK5 1308 aa23.48■■□□□ 1.35
LINC00404-201ENST00000418660 PPIP5K1Q6PFW1 1433 aa23.48■■□□□ 1.35
LINC00404-201ENST00000418660 CARD11Q9BXL7 1154 aa23.46■■□□□ 1.35
LINC00404-201ENST00000418660 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.46■■□□□ 1.35
LINC00404-201ENST00000418660 RALGAPBQ86X10 1494 aa23.45■■□□□ 1.34
LINC00404-201ENST00000418660 GJD4Q96KN9 370 aaPredicted RBP23.45■■□□□ 1.34
LINC00404-201ENST00000418660 FAM83GA6ND36 823 aa23.44■■□□□ 1.34
LINC00404-201ENST00000418660 CABP1Q9NZU7 370 aa23.43■■□□□ 1.34
LINC00404-201ENST00000418660 UPF1Q92900 1129 aaKnown RBP eCLIP23.42■■□□□ 1.34
LINC00404-201ENST00000418660 NWD2Q9ULI1 1742 aa23.41■■□□□ 1.34
LINC00404-201ENST00000418660 CRYBG1Q9Y4K1 1723 aa23.41■■□□□ 1.34
LINC00404-201ENST00000418660 PLCH1Q4KWH8 1693 aa23.41■■□□□ 1.34
LINC00404-201ENST00000418660 BRD4O60885 1362 aaPredicted RBP23.4■■□□□ 1.34
LINC00404-201ENST00000418660 VPS72Q15906 364 aa23.4■■□□□ 1.34
LINC00404-201ENST00000418660 SBNO2Q9Y2G9 1366 aa23.39■■□□□ 1.33
LINC00404-201ENST00000418660 NUTM2GQ5VZR2 741 aa23.38■■□□□ 1.33
LINC00404-201ENST00000418660 ABTB2Q8N961 1025 aa23.38■■□□□ 1.33
LINC00404-201ENST00000418660 COL14A1Q05707 1796 aaKnown RBP23.37■■□□□ 1.33
LINC00404-201ENST00000418660 GLI3P10071 1580 aa23.36■■□□□ 1.33
LINC00404-201ENST00000418660 BTG4Q9NY30 223 aa23.36■■□□□ 1.33
LINC00404-201ENST00000418660 USP6P35125 1406 aa23.35■■□□□ 1.33
LINC00404-201ENST00000418660 PCGF6Q9BYE7 350 aa23.35■■□□□ 1.33
LINC00404-201ENST00000418660 PRDM11Q9NQV5 511 aa23.35■■□□□ 1.33
LINC00404-201ENST00000418660 ATAD2Q6PL18 1390 aa23.35■■□□□ 1.33
LINC00404-201ENST00000418660 PHRF1Q9P1Y6 1649 aaKnown RBP23.34■■□□□ 1.33
LINC00404-201ENST00000418660 CCDC9Q9Y3X0 531 aaKnown RBP23.34■■□□□ 1.33
LINC00404-201ENST00000418660 CLSPNQ9HAW4 1339 aa23.33■■□□□ 1.33
LINC00404-201ENST00000418660 KIAA0232Q92628 1395 aa23.33■■□□□ 1.33
LINC00404-201ENST00000418660 NLRP13Q86W25 1043 aa23.33■■□□□ 1.33
LINC00404-201ENST00000418660 ZNF692Q9BU19 519 aaPredicted RBP23.33■■□□□ 1.33
LINC00404-201ENST00000418660 NRAPQ86VF7 1730 aa23.32■■□□□ 1.32
LINC00404-201ENST00000418660 USP19O94966 1318 aa23.32■■□□□ 1.32
LINC00404-201ENST00000418660 ZC3H6P61129 1189 aaKnown RBP23.31■■□□□ 1.32
LINC00404-201ENST00000418660 SSH2Q76I76 1423 aa23.31■■□□□ 1.32
LINC00404-201ENST00000418660 ONECUT3O60422 494 aaPredicted RBP23.3■■□□□ 1.32
LINC00404-201ENST00000418660 TIMELESSQ9UNS1 1208 aa23.3■■□□□ 1.32
LINC00404-201ENST00000418660 CHRNA2Q15822 529 aa23.29■■□□□ 1.32
LINC00404-201ENST00000418660 GCP02774 474 aa23.28■■□□□ 1.32
LINC00404-201ENST00000418660 NRKQ7Z2Y5 1582 aa23.27■■□□□ 1.32
LINC00404-201ENST00000418660 CPSF1Q10570 1443 aaKnown RBP23.27■■□□□ 1.32
LINC00404-201ENST00000418660 NLRP6P59044 892 aa23.27■■□□□ 1.32
LINC00404-201ENST00000418660 SEPT12Q8IYM1 358 aa23.27■■□□□ 1.32
LINC00404-201ENST00000418660 CPDO75976 1380 aa23.27■■□□□ 1.31
LINC00404-201ENST00000418660 PUS7Q96PZ0 661 aaKnown RBP23.26■■□□□ 1.31
LINC00404-201ENST00000418660 TTC21BQ7Z4L5 1316 aa23.26■■□□□ 1.31
LINC00404-201ENST00000418660 AKAP12Q02952 1782 aa23.25■■□□□ 1.31
LINC00404-201ENST00000418660 ST20-MTHFSA0A0A6YYL1 179 aa23.25■■□□□ 1.31
LINC00404-201ENST00000418660 SLC24A1O60721 1099 aa23.24■■□□□ 1.31
LINC00404-201ENST00000418660 TESK2Q96S53 571 aa23.24■■□□□ 1.31
LINC00404-201ENST00000418660 SPATA31A5Q5VU36 1347 aa23.24■■□□□ 1.31
LINC00404-201ENST00000418660 SPATA31A7Q8IWB4 1347 aa23.24■■□□□ 1.31
LINC00404-201ENST00000418660 KTN1Q86UP2 1357 aaKnown RBP23.24■■□□□ 1.31
LINC00404-201ENST00000418660 TTC21AQ8NDW8 1320 aa23.23■■□□□ 1.31
LINC00404-201ENST00000418660 FAM98CQ17RN3 349 aaKnown RBP23.22■■□□□ 1.31
LINC00404-201ENST00000418660 SLIT3O75094 1523 aa23.22■■□□□ 1.31
LINC00404-201ENST00000418660 PIK3C2AO00443 1686 aa23.22■■□□□ 1.31
LINC00404-201ENST00000418660 TMC1Q8TDI8 760 aa23.21■■□□□ 1.31
LINC00404-201ENST00000418660 EVA1CP58658 441 aa23.2■■□□□ 1.3
LINC00404-201ENST00000418660 STRN4Q9NRL3 753 aa23.2■■□□□ 1.3
LINC00404-201ENST00000418660 CCDC125Q86Z20 511 aa23.19■■□□□ 1.3
LINC00404-201ENST00000418660 SLC12A5Q9H2X9 1139 aa23.19■■□□□ 1.3
LINC00404-201ENST00000418660 BRWD3Q6RI45 1802 aa23.19■■□□□ 1.3
LINC00404-201ENST00000418660 CAMTA1Q9Y6Y1 1673 aa23.19■■□□□ 1.3
LINC00404-201ENST00000418660 CD163L1Q9NR16 1453 aa23.18■■□□□ 1.3
LINC00404-201ENST00000418660 SPATA31A1Q5TZJ5 1347 aa23.18■■□□□ 1.3
LINC00404-201ENST00000418660 A0A0G2JS52 829 aa23.18■■□□□ 1.3
LINC00404-201ENST00000418660 MYT1Q01538 1121 aa23.18■■□□□ 1.3
LINC00404-201ENST00000418660 KRT27Q7Z3Y8 459 aa23.18■■□□□ 1.3
LINC00404-201ENST00000418660 HDGFL2Q7Z4V5 671 aaPredicted RBP23.18■■□□□ 1.3
LINC00404-201ENST00000418660 LMO7Q8WWI1 1683 aa23.18■■□□□ 1.3
LINC00404-201ENST00000418660 USP47Q96K76 1375 aa23.17■■□□□ 1.3
LINC00404-201ENST00000418660 MON2Q7Z3U7 1717 aa23.17■■□□□ 1.3
LINC00404-201ENST00000418660 KCNH5Q8NCM2 988 aa23.16■■□□□ 1.3
LINC00404-201ENST00000418660 CCER1Q8TC90 406 aaPredicted RBP23.16■■□□□ 1.3
LINC00404-201ENST00000418660 TERF2IPQ9NYB0 399 aa23.16■■□□□ 1.3
LINC00404-201ENST00000418660 AATKQ6ZMQ8 1374 aa23.14■■□□□ 1.3
LINC00404-201ENST00000418660 ZBTB7CA1YPR0 619 aa23.14■■□□□ 1.29
LINC00404-201ENST00000418660 LARP1Q6PKG0 1096 aaKnown RBP23.14■■□□□ 1.29
LINC00404-201ENST00000418660 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.14■■□□□ 1.29
LINC00404-201ENST00000418660 NINLQ9Y2I6 1382 aa23.14■■□□□ 1.29
LINC00404-201ENST00000418660 TMF1P82094 1093 aa23.12■■□□□ 1.29
LINC00404-201ENST00000418660 THSD7AQ9UPZ6 1657 aa23.12■■□□□ 1.29
LINC00404-201ENST00000418660 A0A1W2PP64 1363 aa23.12■■□□□ 1.29
LINC00404-201ENST00000418660 USP31Q70CQ4 1352 aa23.12■■□□□ 1.29
LINC00404-201ENST00000418660 COL5A2P05997 1499 aaPredicted RBP23.11■■□□□ 1.29
LINC00404-201ENST00000418660 BLMP54132 1417 aaPredicted RBP23.11■■□□□ 1.29
LINC00404-201ENST00000418660 EDC4Q6P2E9 1401 aaKnown RBP23.11■■□□□ 1.29
LINC00404-201ENST00000418660 ARHGEF25Q86VW2 580 aa23.11■■□□□ 1.29
LINC00404-201ENST00000418660 USP35Q9P2H5 1018 aa23.11■■□□□ 1.29
LINC00404-201ENST00000418660 BARGINQ6ZT62 677 aa23.1■■□□□ 1.29
LINC00404-201ENST00000418660 NME9Q86XW9 330 aa23.1■■□□□ 1.29
LINC00404-201ENST00000418660 SOX12O15370 315 aa23.09■■□□□ 1.29
LINC00404-201ENST00000418660 TCP11L2Q8N4U5 519 aa23.09■■□□□ 1.29
LINC00404-201ENST00000418660 ZRANB1Q9UGI0 708 aa23.09■■□□□ 1.29
LINC00404-201ENST00000418660 THRAP3Q9Y2W1 955 aaKnown RBP23.08■■□□□ 1.29
LINC00404-201ENST00000418660 COL18A1P39060 1754 aa23.07■■□□□ 1.28
LINC00404-201ENST00000418660 NFAT5O94916 1531 aa23.07■■□□□ 1.28
LINC00404-201ENST00000418660 CRB1P82279 1406 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms