RNA–Protein interactions for RNA: ENST00000417876.1

RFC4-204, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 479 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-204ENST00000417876 ZPR1O75312 459 aa9.48□□□□□ -0.89
RFC4-204ENST00000417876 SRPK2P78362 688 aaKnown RBP9.48□□□□□ -0.89
RFC4-204ENST00000417876 ZNF516Q92618 1163 aa9.48□□□□□ -0.89
RFC4-204ENST00000417876 MTRQ99707 1265 aa9.48□□□□□ -0.89
RFC4-204ENST00000417876 CTHP32929 405 aa9.47□□□□□ -0.89
RFC4-204ENST00000417876 PTPN5P54829 565 aa9.47□□□□□ -0.89
RFC4-204ENST00000417876 TJAP1Q5JTD0 557 aa9.47□□□□□ -0.89
RFC4-204ENST00000417876 PPP1R12CQ9BZL4 782 aa9.47□□□□□ -0.89
RFC4-204ENST00000417876 CCNYL3P0C7X3 344 aa9.46□□□□□ -0.9
RFC4-204ENST00000417876 RFX1P22670 979 aa9.46□□□□□ -0.9
RFC4-204ENST00000417876 NR1H3Q13133 447 aa9.46□□□□□ -0.9
RFC4-204ENST00000417876 NUDT12Q9BQG2 462 aa9.46□□□□□ -0.9
RFC4-204ENST00000417876 OCSTAMPQ9BR26 566 aa9.46□□□□□ -0.9
RFC4-204ENST00000417876 PALM3A6NDB9 673 aaPredicted RBP9.45□□□□□ -0.9
RFC4-204ENST00000417876 KCNH2Q12809 1159 aa9.45□□□□□ -0.9
RFC4-204ENST00000417876 PTCRAQ6ISU1 281 aaPredicted RBP9.45□□□□□ -0.9
RFC4-204ENST00000417876 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.44□□□□□ -0.9
RFC4-204ENST00000417876 ZBBXA8MT70 800 aa9.44□□□□□ -0.9
RFC4-204ENST00000417876 ADH1BP00325 375 aa9.44□□□□□ -0.9
RFC4-204ENST00000417876 PDIA4P13667 645 aaKnown RBP9.44□□□□□ -0.9
RFC4-204ENST00000417876 SEMA3FQ13275 785 aa9.44□□□□□ -0.9
RFC4-204ENST00000417876 NYAP1Q6ZVC0 841 aa9.44□□□□□ -0.9
RFC4-204ENST00000417876 RETREG2Q8NC44 543 aa9.44□□□□□ -0.9
RFC4-204ENST00000417876 TFIP11Q9UBB9 837 aaKnown RBP9.44□□□□□ -0.9
RFC4-204ENST00000417876 SOX11P35716 441 aa9.43□□□□□ -0.9
RFC4-204ENST00000417876 TBC1D9Q6ZT07 1266 aa9.43□□□□□ -0.9
RFC4-204ENST00000417876 NKX2-3Q8TAU0 364 aa9.43□□□□□ -0.9
RFC4-204ENST00000417876 PPP1R15AO75807 674 aaPredicted RBP9.42□□□□□ -0.9
RFC4-204ENST00000417876 EIF4G2P78344 907 aaKnown RBP eCLIP9.42□□□□□ -0.9
RFC4-204ENST00000417876 PNMA1Q8ND90 353 aa9.42□□□□□ -0.9
RFC4-204ENST00000417876 ZC3H4Q9UPT8 1303 aaKnown RBP9.41□□□□□ -0.9
RFC4-204ENST00000417876 PIK3CDO00329 1044 aa9.41□□□□□ -0.9
RFC4-204ENST00000417876 LMOD1P29536 600 aaPredicted RBP9.41□□□□□ -0.9
RFC4-204ENST00000417876 PBXIP1Q96AQ6 731 aa9.4□□□□□ -0.9
RFC4-204ENST00000417876 TRAIPQ9BWF2 469 aa9.4□□□□□ -0.9
RFC4-204ENST00000417876 IL21Q9HBE4 155 aa9.4□□□□□ -0.9
RFC4-204ENST00000417876 PDXDC2PQ6P474 469 aa9.39□□□□□ -0.91
RFC4-204ENST00000417876 CCDC24Q8N4L8 307 aa9.39□□□□□ -0.91
RFC4-204ENST00000417876 SLC6A16Q9GZN6 736 aa9.39□□□□□ -0.91
RFC4-204ENST00000417876 CDCA8Q53HL2 280 aa9.38□□□□□ -0.91
RFC4-204ENST00000417876 UNC93B1Q9H1C4 597 aa9.38□□□□□ -0.91
RFC4-204ENST00000417876 MAFBQ9Y5Q3 323 aaPredicted RBP9.38□□□□□ -0.91
RFC4-204ENST00000417876 PODXL2Q9NZ53 605 aa9.37□□□□□ -0.91
RFC4-204ENST00000417876 ACIN1Q9UKV3 1341 aaKnown RBP9.36□□□□□ -0.91
RFC4-204ENST00000417876 S1PR4O95977 384 aa9.36□□□□□ -0.91
RFC4-204ENST00000417876 ARMC2Q8NEN0 867 aa9.36□□□□□ -0.91
RFC4-204ENST00000417876 FAM174AQ8TBP5 190 aa9.36□□□□□ -0.91
RFC4-204ENST00000417876 GPKOWQ92917 476 aaPredicted RBP eCLIP9.36□□□□□ -0.917e-6■■■■■ 33.4
RFC4-204ENST00000417876 GPSM3Q9Y4H4 160 aa9.36□□□□□ -0.91
RFC4-204ENST00000417876 CARNS1A5YM72 827 aa9.35□□□□□ -0.91
RFC4-204ENST00000417876 ATP9BO43861 1147 aa9.35□□□□□ -0.91
RFC4-204ENST00000417876 PTK2Q05397 1052 aa9.35□□□□□ -0.91
RFC4-204ENST00000417876 SH3BP5LQ7L8J4 393 aa9.35□□□□□ -0.91
RFC4-204ENST00000417876 PHTF2Q8N3S3 785 aa9.34□□□□□ -0.91
RFC4-204ENST00000417876 ADAM32Q8TC27 787 aa9.34□□□□□ -0.91
RFC4-204ENST00000417876 CEP126Q9P2H0 1117 aa9.34□□□□□ -0.91
RFC4-204ENST00000417876 KANK4Q5T7N3 995 aaPredicted RBP9.33□□□□□ -0.92
RFC4-204ENST00000417876 NBPF14Q5TI25 921 aa9.33□□□□□ -0.92
RFC4-204ENST00000417876 BAP1Q92560 729 aa9.33□□□□□ -0.92
RFC4-204ENST00000417876 FCF1Q9Y324 198 aaKnown RBP9.33□□□□□ -0.92
RFC4-204ENST00000417876 PPEF1O14829 653 aaPredicted RBP9.32□□□□□ -0.92
RFC4-204ENST00000417876 SH3RF1Q7Z6J0 888 aa9.32□□□□□ -0.92
RFC4-204ENST00000417876 ARHGAP9Q9BRR9 750 aa9.32□□□□□ -0.92
RFC4-204ENST00000417876 PCDHB9Q9Y5E1 797 aa9.32□□□□□ -0.92
RFC4-204ENST00000417876 TSGA10IPQ3SY00 556 aa9.31□□□□□ -0.92
RFC4-204ENST00000417876 C4orf48Q5BLP8 95 aa9.31□□□□□ -0.92
RFC4-204ENST00000417876 FOXJ1Q92949 421 aa9.31□□□□□ -0.92
RFC4-204ENST00000417876 SKIP12755 728 aa9.3□□□□□ -0.92
RFC4-204ENST00000417876 LINC01559Q495D7 138 aa9.3□□□□□ -0.92
RFC4-204ENST00000417876 DEPDC4Q8N2C3 294 aa9.3□□□□□ -0.92
RFC4-204ENST00000417876 NFATC2IPQ8NCF5 419 aa9.3□□□□□ -0.92
RFC4-204ENST00000417876 ATG7O95352 703 aa9.29□□□□□ -0.92
RFC4-204ENST00000417876 USP17L3A6NCW0 530 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 USP17L4A6NCW7 530 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 USP17L5A8MUK1 530 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 USP17L2Q6R6M4 530 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 USP17L1Q7RTZ2 530 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 ZBTB33Q86T24 672 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 CARD14Q9BXL6 1004 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 VRTNQ9H8Y1 702 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 CHIC2Q9UKJ5 165 aa9.28□□□□□ -0.92
RFC4-204ENST00000417876 MAGEB6P1A0A0J9YX57 407 aa9.27□□□□□ -0.93
RFC4-204ENST00000417876 TMEM88BA6NKF7 163 aa9.27□□□□□ -0.93
RFC4-204ENST00000417876 PLA2G2CQ5R387 149 aa9.27□□□□□ -0.93
RFC4-204ENST00000417876 AEBP1Q8IUX7 1158 aa9.27□□□□□ -0.93
RFC4-204ENST00000417876 PLEKHM2Q8IWE5 1019 aa9.27□□□□□ -0.93
RFC4-204ENST00000417876 ZNF511Q8NB15 262 aa9.27□□□□□ -0.93
RFC4-204ENST00000417876 MCCD1P59942 119 aaPredicted RBP9.26□□□□□ -0.93
RFC4-204ENST00000417876 SH3BP2P78314 561 aa9.26□□□□□ -0.93
RFC4-204ENST00000417876 SLFNL1Q499Z3 407 aa9.26□□□□□ -0.93
RFC4-204ENST00000417876 ERFEQ4G0M1 354 aa9.26□□□□□ -0.93
RFC4-204ENST00000417876 ZBTB7CA1YPR0 619 aa9.25□□□□□ -0.93
RFC4-204ENST00000417876 RNF223E7ERA6 249 aa9.25□□□□□ -0.93
RFC4-204ENST00000417876 ITGBL1O95965 494 aaPredicted RBP9.25□□□□□ -0.93
RFC4-204ENST00000417876 CSB-PGBD3P0DP91 1061 aa9.25□□□□□ -0.93
RFC4-204ENST00000417876 KCNC4Q03721 635 aa9.25□□□□□ -0.93
RFC4-204ENST00000417876 TRAF7Q6Q0C0 670 aa9.25□□□□□ -0.93
RFC4-204ENST00000417876 RNF135Q8IUD6 432 aa9.25□□□□□ -0.93
RFC4-204ENST00000417876 PLPP7Q8NBV4 271 aa9.25□□□□□ -0.93
RFC4-204ENST00000417876 ZMIZ1Q9ULJ6 1067 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms