RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 NSD2O96028 1365 aa13.18□□□□□ -0.3
RIF1-202ENST00000414861 NME9Q86XW9 330 aa13.17□□□□□ -0.3
RIF1-202ENST00000414861 TTC21BQ7Z4L5 1316 aa13.17□□□□□ -0.3
RIF1-202ENST00000414861 MYBBP1AQ9BQG0 1328 aaKnown RBP13.17□□□□□ -0.3
RIF1-202ENST00000414861 CCER2I3L3R5 266 aa13.16□□□□□ -0.3
RIF1-202ENST00000414861 ZRANB1Q9UGI0 708 aa13.16□□□□□ -0.3
RIF1-202ENST00000414861 TRPM3Q9HCF6 1732 aaPredicted RBP13.16□□□□□ -0.3
RIF1-202ENST00000414861 FOXO3O43524 673 aa13.15□□□□□ -0.3
RIF1-202ENST00000414861 MARF1Q9Y4F3 1742 aaKnown RBP13.15□□□□□ -0.3
RIF1-202ENST00000414861 XPCQ01831 940 aaPredicted RBP13.15□□□□□ -0.3
RIF1-202ENST00000414861 TNNT2P45379 298 aaPredicted RBP13.14□□□□□ -0.31
RIF1-202ENST00000414861 DDX17Q92841 729 aaKnown RBP13.14□□□□□ -0.31
RIF1-202ENST00000414861 MORC1Q86VD1 984 aa13.14□□□□□ -0.31
RIF1-202ENST00000414861 SLAIN2Q9P270 581 aa13.14□□□□□ -0.31
RIF1-202ENST00000414861 OVOS2A0A0J9YW53 1432 aa13.13□□□□□ -0.31
RIF1-202ENST00000414861 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
RIF1-202ENST00000414861 OVOS2Q6IE36 1432 aa13.13□□□□□ -0.31
RIF1-202ENST00000414861 BRINP3Q76B58 766 aa13.13□□□□□ -0.31
RIF1-202ENST00000414861 TTC21AQ8NDW8 1320 aa13.12□□□□□ -0.31
RIF1-202ENST00000414861 USP54Q70EL1 1684 aa13.12□□□□□ -0.31
RIF1-202ENST00000414861 PSME1Q06323 249 aa13.12□□□□□ -0.31
RIF1-202ENST00000414861 NLRP13Q86W25 1043 aa13.12□□□□□ -0.31
RIF1-202ENST00000414861 MRS2Q9HD23 443 aa13.12□□□□□ -0.31
RIF1-202ENST00000414861 PXDNQ92626 1479 aa13.11□□□□□ -0.31
RIF1-202ENST00000414861 BRD4O60885 1362 aaPredicted RBP13.11□□□□□ -0.31
RIF1-202ENST00000414861 PAK3O75914 559 aaPredicted RBP13.11□□□□□ -0.31
RIF1-202ENST00000414861 ALS2Q96Q42 1657 aa13.11□□□□□ -0.31
RIF1-202ENST00000414861 MAP2P11137 1827 aaKnown RBP13.11□□□□□ -0.31
RIF1-202ENST00000414861 FBLN1P23142 703 aa13.1□□□□□ -0.31
RIF1-202ENST00000414861 ROBO1Q9Y6N7 1651 aa13.1□□□□□ -0.31
RIF1-202ENST00000414861 NHSL1Q5SYE7 1610 aa13.1□□□□□ -0.31
RIF1-202ENST00000414861 NUTM2GQ5VZR2 741 aa13.09□□□□□ -0.31
RIF1-202ENST00000414861 KRT28Q7Z3Y7 464 aa13.09□□□□□ -0.31
RIF1-202ENST00000414861 COG3Q96JB2 828 aa13.09□□□□□ -0.31
RIF1-202ENST00000414861 NPHP3Q7Z494 1330 aa13.09□□□□□ -0.31
RIF1-202ENST00000414861 USP31Q70CQ4 1352 aa13.09□□□□□ -0.31
RIF1-202ENST00000414861 ABTB2Q8N961 1025 aa13.08□□□□□ -0.32
RIF1-202ENST00000414861 SCAF1Q9H7N4 1312 aaKnown RBP13.07□□□□□ -0.32
RIF1-202ENST00000414861 NLRP6P59044 892 aa13.06□□□□□ -0.32
RIF1-202ENST00000414861 MTHFSP49914 203 aa13.06□□□□□ -0.32
RIF1-202ENST00000414861 TNS3Q68CZ2 1445 aa13.06□□□□□ -0.32
RIF1-202ENST00000414861 SBNO1A3KN83 1393 aa13.05□□□□□ -0.32
RIF1-202ENST00000414861 SHPRHQ149N8 1683 aa13.05□□□□□ -0.32
RIF1-202ENST00000414861 SOX12O15370 315 aa13.05□□□□□ -0.32
RIF1-202ENST00000414861 AATKQ6ZMQ8 1374 aa13.05□□□□□ -0.32
RIF1-202ENST00000414861 SMG6Q86US8 1419 aaKnown RBP13.05□□□□□ -0.32
RIF1-202ENST00000414861 PEAK1Q9H792 1746 aa13.05□□□□□ -0.32
RIF1-202ENST00000414861 IQSEC2Q5JU85 1478 aa13.05□□□□□ -0.32
RIF1-202ENST00000414861 SOS2Q07890 1332 aaPredicted RBP13.05□□□□□ -0.32
RIF1-202ENST00000414861 RRS1Q15050 365 aaKnown RBP13.04□□□□□ -0.32
RIF1-202ENST00000414861 EMILIN1Q9Y6C2 1016 aa13.04□□□□□ -0.32
RIF1-202ENST00000414861 COL3A1P02461 1466 aaPredicted RBP13.04□□□□□ -0.32
RIF1-202ENST00000414861 NFAT5O94916 1531 aa13.04□□□□□ -0.32
RIF1-202ENST00000414861 CRYBG1Q9Y4K1 1723 aa13.04□□□□□ -0.32
RIF1-202ENST00000414861 MED1Q15648 1581 aaPredicted RBP13.04□□□□□ -0.32
RIF1-202ENST00000414861 LMOD2Q6P5Q4 547 aa13.04□□□□□ -0.32
RIF1-202ENST00000414861 FAM9BQ8IZU0 186 aa13.04□□□□□ -0.32
RIF1-202ENST00000414861 PNISRQ8TF01 805 aaKnown RBP13.04□□□□□ -0.32
RIF1-202ENST00000414861 POLKQ9UBT6 870 aa13.04□□□□□ -0.32
RIF1-202ENST00000414861 AHDC1Q5TGY3 1603 aaPredicted RBP13.03□□□□□ -0.32
RIF1-202ENST00000414861 YTHDC1Q96MU7 727 aaKnown RBP13.03□□□□□ -0.32
RIF1-202ENST00000414861 SLIT3O75094 1523 aa13.03□□□□□ -0.32
RIF1-202ENST00000414861 LTN1O94822 1766 aa13.03□□□□□ -0.32
RIF1-202ENST00000414861 SPATA31A3Q5VYP0 1347 aa13.03□□□□□ -0.32
RIF1-202ENST00000414861 PHRF1Q9P1Y6 1649 aaKnown RBP13.02□□□□□ -0.32
RIF1-202ENST00000414861 PLEKHG5O94827 1062 aa13.02□□□□□ -0.32
RIF1-202ENST00000414861 CERKQ8TCT0 537 aa13.02□□□□□ -0.32
RIF1-202ENST00000414861 CDK12Q9NYV4 1490 aaPredicted RBP13.02□□□□□ -0.33
RIF1-202ENST00000414861 USP19O94966 1318 aa13.02□□□□□ -0.33
RIF1-202ENST00000414861 UBAP1LF5GYI3 381 aa13.01□□□□□ -0.33
RIF1-202ENST00000414861 PPM1GO15355 546 aaPredicted RBP13.01□□□□□ -0.33
RIF1-202ENST00000414861 TOM1O60784 492 aa13.01□□□□□ -0.33
RIF1-202ENST00000414861 PIP4K2BP78356 416 aa13.01□□□□□ -0.33
RIF1-202ENST00000414861 PNPLA6Q8IY17 1366 aa13.01□□□□□ -0.33
RIF1-202ENST00000414861 ABCA3Q99758 1704 aa13□□□□□ -0.33
RIF1-202ENST00000414861 MAP3K19Q56UN5 1328 aa13□□□□□ -0.33
RIF1-202ENST00000414861 PHLPP1O60346 1717 aa13□□□□□ -0.33
RIF1-202ENST00000414861 COL16A1Q07092 1604 aaPredicted RBP13□□□□□ -0.33
RIF1-202ENST00000414861 ARHGEF10O15013 1369 aa12.99□□□□□ -0.33
RIF1-202ENST00000414861 INSRP06213 1382 aa12.98□□□□□ -0.33
RIF1-202ENST00000414861 CABLES1Q8TDN4 633 aa12.98□□□□□ -0.33
RIF1-202ENST00000414861 CFAP53Q96M91 514 aa12.98□□□□□ -0.33
RIF1-202ENST00000414861 GCP02774 474 aa12.97□□□□□ -0.33
RIF1-202ENST00000414861 ADAMTS8Q9UP79 889 aa12.96□□□□□ -0.33
RIF1-202ENST00000414861 WDR43Q15061 677 aaKnown RBP eCLIP12.96□□□□□ -0.34
RIF1-202ENST00000414861 HSP90AB2PQ58FF8 381 aa12.96□□□□□ -0.34
RIF1-202ENST00000414861 KCNH5Q8NCM2 988 aa12.96□□□□□ -0.34
RIF1-202ENST00000414861 FLT4P35916 1363 aa12.96□□□□□ -0.34
RIF1-202ENST00000414861 RGPD5Q99666 1765 aa12.95□□□□□ -0.34
RIF1-202ENST00000414861 BLMP54132 1417 aaPredicted RBP12.95□□□□□ -0.34
RIF1-202ENST00000414861 SENP3-EIF4A1A0A087X0R7 540 aa12.95□□□□□ -0.34
RIF1-202ENST00000414861 COL22A1Q8NFW1 1626 aaPredicted RBP12.94□□□□□ -0.34
RIF1-202ENST00000414861 DIAPH1O60610 1272 aaKnown RBP12.94□□□□□ -0.34
RIF1-202ENST00000414861 RTL1A6NKG5 1358 aa12.94□□□□□ -0.34
RIF1-202ENST00000414861 HOXC9P31274 260 aa12.94□□□□□ -0.34
RIF1-202ENST00000414861 AMPHP49418 695 aa12.94□□□□□ -0.34
RIF1-202ENST00000414861 ARHGEF25Q86VW2 580 aa12.94□□□□□ -0.34
RIF1-202ENST00000414861 RGPD1P0DJD0 1748 aa12.94□□□□□ -0.34
RIF1-202ENST00000414861 ZBTB7CA1YPR0 619 aa12.93□□□□□ -0.34
RIF1-202ENST00000414861 IL13P35225 146 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms