RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 USP47Q96K76 1375 aa12.29□□□□□ -0.44
SNHG3-201ENST00000413987 IFT172Q9UG01 1749 aa12.28□□□□□ -0.44
SNHG3-201ENST00000413987 EIF4G2P78344 907 aaKnown RBP eCLIP12.28□□□□□ -0.44
SNHG3-201ENST00000413987 MYH16Q9H6N6 1097 aa12.28□□□□□ -0.44
SNHG3-201ENST00000413987 ANO8Q9HCE9 1232 aaPredicted RBP12.28□□□□□ -0.44
SNHG3-201ENST00000413987 ZC3H4Q9UPT8 1303 aaKnown RBP12.28□□□□□ -0.44
SNHG3-201ENST00000413987 C11orf95C9JLR9 678 aaPredicted RBP12.27□□□□□ -0.44
SNHG3-201ENST00000413987 HNRNPUQ00839 825 aaKnown RBP eCLIP12.27□□□□□ -0.44
SNHG3-201ENST00000413987 POLA2Q14181 598 aa12.27□□□□□ -0.44
SNHG3-201ENST00000413987 GPATCH11Q8N954 259 aa12.27□□□□□ -0.44
SNHG3-201ENST00000413987 TNRQ92752 1358 aa12.27□□□□□ -0.44
SNHG3-201ENST00000413987 PPLO60437 1756 aa12.27□□□□□ -0.45
SNHG3-201ENST00000413987 NEXMIFQ5QGS0 1516 aa12.27□□□□□ -0.45
SNHG3-201ENST00000413987 PROSER2Q86WR7 435 aaPredicted RBP12.27□□□□□ -0.45
SNHG3-201ENST00000413987 ANKRD62A6NC57 917 aa12.26□□□□□ -0.45
SNHG3-201ENST00000413987 PDE4DQ08499 809 aa12.26□□□□□ -0.45
SNHG3-201ENST00000413987 DNAJC2Q99543 621 aaKnown RBP12.26□□□□□ -0.45
SNHG3-201ENST00000413987 TMEM132EQ6IEE7 984 aa12.25□□□□□ -0.45
SNHG3-201ENST00000413987 A2ML1A8K2U0 1454 aa12.25□□□□□ -0.45
SNHG3-201ENST00000413987 ST20-MTHFSA0A0A6YYL1 179 aa12.25□□□□□ -0.45
SNHG3-201ENST00000413987 RTL5Q5HYW3 569 aaPredicted RBP12.25□□□□□ -0.45
SNHG3-201ENST00000413987 ARHGEF1Q92888 912 aaKnown RBP12.25□□□□□ -0.45
SNHG3-201ENST00000413987 DRC1Q96MC2 740 aa12.25□□□□□ -0.45
SNHG3-201ENST00000413987 NEURL4Q96JN8 1562 aa12.24□□□□□ -0.45
SNHG3-201ENST00000413987 KCNA1Q09470 495 aa12.24□□□□□ -0.45
SNHG3-201ENST00000413987 MKRN4PQ13434 485 aaPredicted RBP12.24□□□□□ -0.45
SNHG3-201ENST00000413987 GRIPAP1Q4V328 841 aa12.24□□□□□ -0.45
SNHG3-201ENST00000413987 MYOM2P54296 1465 aa12.24□□□□□ -0.45
SNHG3-201ENST00000413987 ADAMTSL3P82987 1691 aa12.24□□□□□ -0.45
SNHG3-201ENST00000413987 PPME1Q9Y570 386 aa12.23□□□□□ -0.45
SNHG3-201ENST00000413987 PIK3C2GO75747 1445 aa12.23□□□□□ -0.45
SNHG3-201ENST00000413987 WASHC2AQ641Q2 1341 aa12.22□□□□□ -0.45
SNHG3-201ENST00000413987 MCCP23508 829 aa12.22□□□□□ -0.45
SNHG3-201ENST00000413987 NRXN1Q9ULB1 1477 aa12.22□□□□□ -0.45
SNHG3-201ENST00000413987 PLEKHG3A1L390 1219 aa12.21□□□□□ -0.45
SNHG3-201ENST00000413987 FNBP4Q8N3X1 1017 aaPredicted RBP12.21□□□□□ -0.45
SNHG3-201ENST00000413987 UBR1Q8IWV7 1749 aa12.21□□□□□ -0.46
SNHG3-201ENST00000413987 TRIM66O15016 1216 aa12.21□□□□□ -0.46
SNHG3-201ENST00000413987 RIMS2Q9UQ26 1411 aa12.2□□□□□ -0.46
SNHG3-201ENST00000413987 GPRASP1Q5JY77 1395 aa12.2□□□□□ -0.46
SNHG3-201ENST00000413987 TPD52L2O43399 206 aaKnown RBP12.2□□□□□ -0.46
SNHG3-201ENST00000413987 ANP32AP39687 249 aaKnown RBP12.2□□□□□ -0.46
SNHG3-201ENST00000413987 CADPS2Q86UW7 1296 aa12.2□□□□□ -0.46
SNHG3-201ENST00000413987 KRI1Q8N9T8 703 aaKnown RBP12.2□□□□□ -0.46
SNHG3-201ENST00000413987 VGFO15240 615 aaPredicted RBP12.19□□□□□ -0.46
SNHG3-201ENST00000413987 SIRT1Q96EB6 747 aa12.19□□□□□ -0.46
SNHG3-201ENST00000413987 LAS1LQ9Y4W2 734 aaKnown RBP12.19□□□□□ -0.46
SNHG3-201ENST00000413987 RPGRIP1LQ68CZ1 1315 aa12.19□□□□□ -0.46
SNHG3-201ENST00000413987 MYO3AQ8NEV4 1616 aa12.19□□□□□ -0.46
SNHG3-201ENST00000413987 LTKP29376 864 aa12.18□□□□□ -0.46
SNHG3-201ENST00000413987 IPO9Q96P70 1041 aaKnown RBP12.18□□□□□ -0.46
SNHG3-201ENST00000413987 TRAK1Q9UPV9 953 aa12.18□□□□□ -0.46
SNHG3-201ENST00000413987 KIF7Q2M1P5 1343 aa12.18□□□□□ -0.46
SNHG3-201ENST00000413987 ZFYVE9O95405 1425 aa12.18□□□□□ -0.46
SNHG3-201ENST00000413987 GORABQ5T7V8 394 aa12.18□□□□□ -0.46
SNHG3-201ENST00000413987 C14orf93Q9H972 538 aaKnown RBP12.18□□□□□ -0.46
SNHG3-201ENST00000413987 STK26Q9P289 416 aa12.18□□□□□ -0.46
SNHG3-201ENST00000413987 PLCD3Q8N3E9 789 aa12.17□□□□□ -0.46
SNHG3-201ENST00000413987 PTPRMP28827 1452 aa12.17□□□□□ -0.46
SNHG3-201ENST00000413987 CHRM1P11229 460 aaPredicted RBP12.17□□□□□ -0.46
SNHG3-201ENST00000413987 MCM6Q14566 821 aa12.17□□□□□ -0.46
SNHG3-201ENST00000413987 SPTY2D1Q68D10 685 aaPredicted RBP12.17□□□□□ -0.46
SNHG3-201ENST00000413987 PLSCR2Q9NRY7 297 aa12.17□□□□□ -0.46
SNHG3-201ENST00000413987 RBM27Q9P2N5 1060 aaKnown RBP12.17□□□□□ -0.46
SNHG3-201ENST00000413987 ZBTB47Q9UFB7 747 aaPredicted RBP12.17□□□□□ -0.46
SNHG3-201ENST00000413987 ASXL1Q8IXJ9 1541 aa12.16□□□□□ -0.46
SNHG3-201ENST00000413987 ADGRB1O14514 1584 aa12.16□□□□□ -0.46
SNHG3-201ENST00000413987 TMEM2Q9UHN6 1383 aa12.16□□□□□ -0.46
SNHG3-201ENST00000413987 IQGAP1P46940 1657 aa12.16□□□□□ -0.46
SNHG3-201ENST00000413987 NLRP1Q9C000 1473 aa12.16□□□□□ -0.46
SNHG3-201ENST00000413987 RBM10P98175 930 aaKnown RBP12.16□□□□□ -0.46
SNHG3-201ENST00000413987 SAFB2Q14151 953 aaKnown RBP eCLIP12.16□□□□□ -0.46
SNHG3-201ENST00000413987 TMTC2Q8N394 836 aa12.16□□□□□ -0.46
SNHG3-201ENST00000413987 KIAA1522Q9P206 1035 aaPredicted RBP12.16□□□□□ -0.46
SNHG3-201ENST00000413987 SUGT1Q9Y2Z0 365 aa12.16□□□□□ -0.46
SNHG3-201ENST00000413987 RBM47A0AV96 593 aaKnown RBP12.15□□□□□ -0.46
SNHG3-201ENST00000413987 PAK3O75914 559 aaPredicted RBP12.15□□□□□ -0.46
SNHG3-201ENST00000413987 SREK1Q8WXA9 508 aaKnown RBP12.15□□□□□ -0.46
SNHG3-201ENST00000413987 CCDC7Q96M83 1385 aa12.15□□□□□ -0.46
SNHG3-201ENST00000413987 DISP3Q9P2K9 1392 aa12.15□□□□□ -0.46
SNHG3-201ENST00000413987 STK25O00506 426 aa12.15□□□□□ -0.46
SNHG3-201ENST00000413987 CNGB1Q14028 1251 aaPredicted RBP12.15□□□□□ -0.46
SNHG3-201ENST00000413987 B4GALNT3Q6L9W6 998 aa12.15□□□□□ -0.46
SNHG3-201ENST00000413987 STAC3Q96MF2 364 aa12.15□□□□□ -0.46
SNHG3-201ENST00000413987 TESK2Q96S53 571 aa12.15□□□□□ -0.46
SNHG3-201ENST00000413987 RYDENQ9NUL5 291 aaKnown RBP12.15□□□□□ -0.46
SNHG3-201ENST00000413987 SCAF11Q99590 1463 aaKnown RBP12.15□□□□□ -0.47
SNHG3-201ENST00000413987 LAMC1P11047 1609 aa12.14□□□□□ -0.47
SNHG3-201ENST00000413987 KIAA1210Q9ULL0 1709 aa12.14□□□□□ -0.47
SNHG3-201ENST00000413987 KDM4FA0A1W2PPD8 638 aa12.14□□□□□ -0.47
SNHG3-201ENST00000413987 SND1Q7KZF4 910 aaKnown RBP eCLIP12.14□□□□□ -0.47
SNHG3-201ENST00000413987 SALL2Q9Y467 1007 aaPredicted RBP12.14□□□□□ -0.47
SNHG3-201ENST00000413987 CEP170BQ9Y4F5 1589 aaPredicted RBP12.14□□□□□ -0.47
SNHG3-201ENST00000413987 FAM43BQ6ZT52 329 aaPredicted RBP12.14□□□□□ -0.47
SNHG3-201ENST00000413987 TXNDC2Q86VQ3 553 aa12.14□□□□□ -0.47
SNHG3-201ENST00000413987 ZNF219Q9P2Y4 722 aaPredicted RBP12.14□□□□□ -0.47
SNHG3-201ENST00000413987 ZBED9Q6R2W3 1325 aa12.14□□□□□ -0.47
SNHG3-201ENST00000413987 MICAL1Q8TDZ2 1067 aa12.13□□□□□ -0.47
SNHG3-201ENST00000413987 SGSM3Q96HU1 749 aa12.13□□□□□ -0.47
SNHG3-201ENST00000413987 SLC26A8Q96RN1 970 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms