RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 PLEKHG5O94827 1062 aa29.24■■■□□ 2.27
VSX1-204ENST00000409958 CABLES1Q8TDN4 633 aa29.23■■■□□ 2.27
VSX1-204ENST00000409958 PUS7Q96PZ0 661 aaKnown RBP29.23■■■□□ 2.27
VSX1-204ENST00000409958 BRD4O60885 1362 aaPredicted RBP29.23■■■□□ 2.27
VSX1-204ENST00000409958 HAP1P54257 671 aaPredicted RBP29.22■■■□□ 2.27
VSX1-204ENST00000409958 MARF1Q9Y4F3 1742 aaKnown RBP29.22■■■□□ 2.27
VSX1-204ENST00000409958 FNBP4Q8N3X1 1017 aaPredicted RBP29.2■■■□□ 2.27
VSX1-204ENST00000409958 ABCA3Q99758 1704 aa29.19■■■□□ 2.26
VSX1-204ENST00000409958 USP6P35125 1406 aa29.19■■■□□ 2.26
VSX1-204ENST00000409958 ZNF692Q9BU19 519 aaPredicted RBP29.19■■■□□ 2.26
VSX1-204ENST00000409958 USP21Q9UK80 565 aa29.16■■■□□ 2.26
VSX1-204ENST00000409958 ABTB2Q8N961 1025 aa29.15■■■□□ 2.26
VSX1-204ENST00000409958 CPSF1Q10570 1443 aaKnown RBP29.14■■■□□ 2.26
VSX1-204ENST00000409958 SSH2Q76I76 1423 aa29.14■■■□□ 2.26
VSX1-204ENST00000409958 TMF1P82094 1093 aa29.14■■■□□ 2.25
VSX1-204ENST00000409958 CRYBG1Q9Y4K1 1723 aa29.13■■■□□ 2.25
VSX1-204ENST00000409958 AKAP12Q02952 1782 aa29.12■■■□□ 2.25
VSX1-204ENST00000409958 TMC1Q8TDI8 760 aa29.12■■■□□ 2.25
VSX1-204ENST00000409958 QTRT2Q9H974 415 aaKnown RBP29.12■■■□□ 2.25
VSX1-204ENST00000409958 NUTM2GQ5VZR2 741 aa29.11■■■□□ 2.25
VSX1-204ENST00000409958 BCL9LQ86UU0 1499 aa29.1■■■□□ 2.25
VSX1-204ENST00000409958 SLIT2O94813 1529 aa29.1■■■□□ 2.25
VSX1-204ENST00000409958 RXRBP28702 533 aa29.1■■■□□ 2.25
VSX1-204ENST00000409958 SLC12A5Q9H2X9 1139 aa29.09■■■□□ 2.25
VSX1-204ENST00000409958 TRPC5Q9UL62 973 aaPredicted RBP29.09■■■□□ 2.25
VSX1-204ENST00000409958 KTN1Q86UP2 1357 aaKnown RBP29.09■■■□□ 2.25
VSX1-204ENST00000409958 NINLQ9Y2I6 1382 aa29.09■■■□□ 2.25
VSX1-204ENST00000409958 NLRP13Q86W25 1043 aa29.08■■■□□ 2.25
VSX1-204ENST00000409958 TTC21BQ7Z4L5 1316 aa29.07■■■□□ 2.24
VSX1-204ENST00000409958 CD163L1Q9NR16 1453 aa29.07■■■□□ 2.24
VSX1-204ENST00000409958 USP19O94966 1318 aa29.07■■■□□ 2.24
VSX1-204ENST00000409958 FAM83GA6ND36 823 aa29.06■■■□□ 2.24
VSX1-204ENST00000409958 RBM6P78332 1123 aaKnown RBP29.06■■■□□ 2.24
VSX1-204ENST00000409958 CDCA8Q53HL2 280 aa29.06■■■□□ 2.24
VSX1-204ENST00000409958 HDGFL2Q7Z4V5 671 aaPredicted RBP29.06■■■□□ 2.24
VSX1-204ENST00000409958 ATRNO75882 1429 aa29.06■■■□□ 2.24
VSX1-204ENST00000409958 TTC21AQ8NDW8 1320 aa29.06■■■□□ 2.24
VSX1-204ENST00000409958 PHRF1Q9P1Y6 1649 aaKnown RBP29.05■■■□□ 2.24
VSX1-204ENST00000409958 EIF4G2P78344 907 aaKnown RBP eCLIP29.05■■■□□ 2.24
VSX1-204ENST00000409958 UNC5CLQ8IV45 518 aa29.05■■■□□ 2.24
VSX1-204ENST00000409958 TERF2IPQ9NYB0 399 aa29.05■■■□□ 2.24
VSX1-204ENST00000409958 MON2Q7Z3U7 1717 aa29.05■■■□□ 2.24
VSX1-204ENST00000409958 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.03■■■□□ 2.24
VSX1-204ENST00000409958 NRKQ7Z2Y5 1582 aa29.03■■■□□ 2.24
VSX1-204ENST00000409958 NLRP6P59044 892 aa29.03■■■□□ 2.24
VSX1-204ENST00000409958 CDK12Q9NYV4 1490 aaPredicted RBP29.02■■■□□ 2.24
VSX1-204ENST00000409958 NWD2Q9ULI1 1742 aa29.02■■■□□ 2.24
VSX1-204ENST00000409958 PIK3C2AO00443 1686 aa29.01■■■□□ 2.24
VSX1-204ENST00000409958 PLCH1Q4KWH8 1693 aa29.01■■■□□ 2.24
VSX1-204ENST00000409958 RGS12O14924 1447 aa29.01■■■□□ 2.23
VSX1-204ENST00000409958 COL14A1Q05707 1796 aaKnown RBP29■■■□□ 2.23
VSX1-204ENST00000409958 PRDM11Q9NQV5 511 aa29■■■□□ 2.23
VSX1-204ENST00000409958 A0A1W2PP64 1363 aa29■■■□□ 2.23
VSX1-204ENST00000409958 KIAA0232Q92628 1395 aa29■■■□□ 2.23
VSX1-204ENST00000409958 GCP02774 474 aa28.99■■■□□ 2.23
VSX1-204ENST00000409958 HSPA5P11021 654 aaKnown RBP28.99■■■□□ 2.23
VSX1-204ENST00000409958 ZC3H6P61129 1189 aaKnown RBP28.97■■■□□ 2.23
VSX1-204ENST00000409958 EDC4Q6P2E9 1401 aaKnown RBP28.97■■■□□ 2.23
VSX1-204ENST00000409958 BTG4Q9NY30 223 aa28.96■■■□□ 2.23
VSX1-204ENST00000409958 CPDO75976 1380 aa28.96■■■□□ 2.23
VSX1-204ENST00000409958 SLIT3O75094 1523 aa28.96■■■□□ 2.23
VSX1-204ENST00000409958 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.95■■■□□ 2.23
VSX1-204ENST00000409958 GJD4Q96KN9 370 aaPredicted RBP28.95■■■□□ 2.23
VSX1-204ENST00000409958 ANKRD36BQ8N2N9 1353 aa28.95■■■□□ 2.22
VSX1-204ENST00000409958 VPS72Q15906 364 aa28.94■■■□□ 2.22
VSX1-204ENST00000409958 USP31Q70CQ4 1352 aa28.93■■■□□ 2.22
VSX1-204ENST00000409958 CHRNA2Q15822 529 aa28.93■■■□□ 2.22
VSX1-204ENST00000409958 NRAPQ86VF7 1730 aa28.92■■■□□ 2.22
VSX1-204ENST00000409958 KCNH5Q8NCM2 988 aa28.91■■■□□ 2.22
VSX1-204ENST00000409958 NME9Q86XW9 330 aa28.9■■■□□ 2.22
VSX1-204ENST00000409958 USP54Q70EL1 1684 aa28.87■■■□□ 2.21
VSX1-204ENST00000409958 GLI3P10071 1580 aa28.87■■■□□ 2.21
VSX1-204ENST00000409958 ZRANB1Q9UGI0 708 aa28.87■■■□□ 2.21
VSX1-204ENST00000409958 CCDC9Q9Y3X0 531 aaKnown RBP28.87■■■□□ 2.21
VSX1-204ENST00000409958 MYOM1P52179 1685 aa28.84■■■□□ 2.21
VSX1-204ENST00000409958 LMO7Q8WWI1 1683 aa28.84■■■□□ 2.21
VSX1-204ENST00000409958 AATKQ6ZMQ8 1374 aa28.83■■■□□ 2.21
VSX1-204ENST00000409958 CAMTA1Q9Y6Y1 1673 aa28.82■■■□□ 2.2
VSX1-204ENST00000409958 ARHGEF25Q86VW2 580 aa28.82■■■□□ 2.2
VSX1-204ENST00000409958 NFAT5O94916 1531 aa28.82■■■□□ 2.2
VSX1-204ENST00000409958 SOX12O15370 315 aa28.81■■■□□ 2.2
VSX1-204ENST00000409958 OVOS2A0A0J9YW53 1432 aa28.81■■■□□ 2.2
VSX1-204ENST00000409958 OVOS2Q6IE36 1432 aa28.81■■■□□ 2.2
VSX1-204ENST00000409958 SPATA31A5Q5VU36 1347 aa28.81■■■□□ 2.2
VSX1-204ENST00000409958 SPATA31A7Q8IWB4 1347 aa28.81■■■□□ 2.2
VSX1-204ENST00000409958 ZBTB7CA1YPR0 619 aa28.8■■■□□ 2.2
VSX1-204ENST00000409958 POLR3GLQ9BT43 218 aa28.8■■■□□ 2.2
VSX1-204ENST00000409958 STRN4Q9NRL3 753 aa28.8■■■□□ 2.2
VSX1-204ENST00000409958 ONECUT3O60422 494 aaPredicted RBP28.79■■■□□ 2.2
VSX1-204ENST00000409958 EVA1CP58658 441 aa28.79■■■□□ 2.2
VSX1-204ENST00000409958 COG3Q96JB2 828 aa28.76■■■□□ 2.19
VSX1-204ENST00000409958 CARD14Q9BXL6 1004 aa28.76■■■□□ 2.19
VSX1-204ENST00000409958 COL18A1P39060 1754 aa28.76■■■□□ 2.19
VSX1-204ENST00000409958 COL5A2P05997 1499 aaPredicted RBP28.75■■■□□ 2.19
VSX1-204ENST00000409958 SPATA31A1Q5TZJ5 1347 aa28.75■■■□□ 2.19
VSX1-204ENST00000409958 C11orf95C9JLR9 678 aaPredicted RBP28.74■■■□□ 2.19
VSX1-204ENST00000409958 FYB1O15117 783 aa28.74■■■□□ 2.19
VSX1-204ENST00000409958 SEPT12Q8IYM1 358 aa28.74■■■□□ 2.19
VSX1-204ENST00000409958 UPF1Q92900 1129 aaKnown RBP eCLIP28.74■■■□□ 2.19
VSX1-204ENST00000409958 LARP1Q6PKG0 1096 aaKnown RBP28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms