RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 MORC1Q86VD1 984 aa7.43□□□□□ -1.22
EPHA4-202ENST00000409854 USP6P35125 1406 aa7.43□□□□□ -1.22
EPHA4-202ENST00000409854 SMG6Q86US8 1419 aaKnown RBP7.43□□□□□ -1.22
EPHA4-202ENST00000409854 ZNF692Q9BU19 519 aaPredicted RBP7.42□□□□□ -1.22
EPHA4-202ENST00000409854 SCAF1Q9H7N4 1312 aaKnown RBP7.42□□□□□ -1.22
EPHA4-202ENST00000409854 NCOA3Q9Y6Q9 1424 aa7.42□□□□□ -1.22
EPHA4-202ENST00000409854 OVOS2A0A0J9YW53 1432 aa7.41□□□□□ -1.22
EPHA4-202ENST00000409854 OVOS2Q6IE36 1432 aa7.41□□□□□ -1.22
EPHA4-202ENST00000409854 TRPM3Q9HCF6 1732 aaPredicted RBP7.41□□□□□ -1.22
EPHA4-202ENST00000409854 ACEP12821 1306 aa7.4□□□□□ -1.22
EPHA4-202ENST00000409854 AATKQ6ZMQ8 1374 aa7.4□□□□□ -1.22
EPHA4-202ENST00000409854 DCCP43146 1447 aa7.4□□□□□ -1.22
EPHA4-202ENST00000409854 GGNBP2Q9H3C7 697 aa7.4□□□□□ -1.23
EPHA4-202ENST00000409854 PNPLA6Q8IY17 1366 aa7.39□□□□□ -1.23
EPHA4-202ENST00000409854 CDK12Q9NYV4 1490 aaPredicted RBP7.39□□□□□ -1.23
EPHA4-202ENST00000409854 PEAK1Q9H792 1746 aa7.39□□□□□ -1.23
EPHA4-202ENST00000409854 IQSEC2Q5JU85 1478 aa7.39□□□□□ -1.23
EPHA4-202ENST00000409854 TTC21BQ7Z4L5 1316 aa7.38□□□□□ -1.23
EPHA4-202ENST00000409854 TTC21AQ8NDW8 1320 aa7.38□□□□□ -1.23
EPHA4-202ENST00000409854 ADAMTS8Q9UP79 889 aa7.38□□□□□ -1.23
EPHA4-202ENST00000409854 USP31Q70CQ4 1352 aa7.38□□□□□ -1.23
EPHA4-202ENST00000409854 RGPD1P0DJD0 1748 aa7.38□□□□□ -1.23
EPHA4-202ENST00000409854 HSPA2P54652 639 aa7.38□□□□□ -1.23
EPHA4-202ENST00000409854 PHRF1Q9P1Y6 1649 aaKnown RBP7.38□□□□□ -1.23
EPHA4-202ENST00000409854 MTHFSP49914 203 aa7.37□□□□□ -1.23
EPHA4-202ENST00000409854 WDR43Q15061 677 aaKnown RBP eCLIP7.37□□□□□ -1.23
EPHA4-202ENST00000409854 ALS2Q96Q42 1657 aa7.37□□□□□ -1.23
EPHA4-202ENST00000409854 LTN1O94822 1766 aa7.37□□□□□ -1.23
EPHA4-202ENST00000409854 NME9Q86XW9 330 aa7.37□□□□□ -1.23
EPHA4-202ENST00000409854 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.37□□□□□ -1.23
EPHA4-202ENST00000409854 NUTM2FA1L443 756 aa7.36□□□□□ -1.23
EPHA4-202ENST00000409854 TNNT2P45379 298 aaPredicted RBP7.36□□□□□ -1.23
EPHA4-202ENST00000409854 CFAP53Q96M91 514 aa7.36□□□□□ -1.23
EPHA4-202ENST00000409854 C1orf167Q5SNV9 1468 aa7.36□□□□□ -1.23
EPHA4-202ENST00000409854 MST1RQ04912 1400 aa7.36□□□□□ -1.23
EPHA4-202ENST00000409854 TMEM94Q12767 1356 aa7.36□□□□□ -1.23
EPHA4-202ENST00000409854 PROSER2Q86WR7 435 aaPredicted RBP7.35□□□□□ -1.23
EPHA4-202ENST00000409854 CRYBG1Q9Y4K1 1723 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 PMFBP1Q8TBY8 1022 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 COG3Q96JB2 828 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 POLKQ9UBT6 870 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 ZRANB1Q9UGI0 708 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 PHF8Q9UPP1 1060 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 C19orf44Q9H6X5 657 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 GTF3C3Q9Y5Q9 886 aa7.35□□□□□ -1.23
EPHA4-202ENST00000409854 NFAT5O94916 1531 aa7.34□□□□□ -1.23
EPHA4-202ENST00000409854 ZNF521Q96K83 1311 aa7.34□□□□□ -1.23
EPHA4-202ENST00000409854 PDE3BQ13370 1112 aa7.34□□□□□ -1.23
EPHA4-202ENST00000409854 RBM33Q96EV2 1170 aaKnown RBP7.34□□□□□ -1.23
EPHA4-202ENST00000409854 SLIT3O75094 1523 aa7.34□□□□□ -1.23
EPHA4-202ENST00000409854 DLG5Q8TDM6 1919 aa7.34□□□□□ -1.23
EPHA4-202ENST00000409854 NGDNQ8NEJ9 315 aaKnown RBP7.34□□□□□ -1.23
EPHA4-202ENST00000409854 NCBP3Q53F19 620 aaKnown RBP7.33□□□□□ -1.24
EPHA4-202ENST00000409854 NGEFQ8N5V2 710 aa7.33□□□□□ -1.24
EPHA4-202ENST00000409854 NUDCQ9Y266 331 aa7.33□□□□□ -1.24
EPHA4-202ENST00000409854 KIF24Q5T7B8 1368 aa7.32□□□□□ -1.24
EPHA4-202ENST00000409854 NHSL1Q5SYE7 1610 aa7.32□□□□□ -1.24
EPHA4-202ENST00000409854 DIAPH1O60610 1272 aaKnown RBP7.32□□□□□ -1.24
EPHA4-202ENST00000409854 C14orf37Q86TY3 774 aa7.32□□□□□ -1.24
EPHA4-202ENST00000409854 RUNDC1Q96C34 613 aa7.32□□□□□ -1.24
EPHA4-202ENST00000409854 EMILIN1Q9Y6C2 1016 aa7.32□□□□□ -1.24
EPHA4-202ENST00000409854 MSH6P52701 1360 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 MED1Q15648 1581 aaPredicted RBP7.31□□□□□ -1.24
EPHA4-202ENST00000409854 CAMTA1Q9Y6Y1 1673 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 FBLN1P23142 703 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 ESCO1Q5FWF5 840 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 CCDC146Q8IYE0 955 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 PLEKHF1Q96S99 279 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 IL13P35225 146 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 ORAI2Q96SN7 254 aa7.31□□□□□ -1.24
EPHA4-202ENST00000409854 SBNO1A3KN83 1393 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 PXDNQ92626 1479 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 ABCA3Q99758 1704 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 ZNF335Q9H4Z2 1342 aaPredicted RBP7.3□□□□□ -1.24
EPHA4-202ENST00000409854 RTL1A6NKG5 1358 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 APAF1O14727 1248 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 CADPS2Q86UW7 1296 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 LTBP4Q8N2S1 1624 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 DMRT2Q9Y5R5 561 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 RGPD5Q99666 1765 aa7.3□□□□□ -1.24
EPHA4-202ENST00000409854 FLT4P35916 1363 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 RNF123Q5XPI4 1314 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 U2AF1L5P0DN76 240 aaPredicted RBP7.29□□□□□ -1.24
EPHA4-202ENST00000409854 ATF3P18847 181 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 U2AF1Q01081 240 aaKnown RBP eCLIP7.29□□□□□ -1.24
EPHA4-202ENST00000409854 RRS1Q15050 365 aaKnown RBP7.29□□□□□ -1.24
EPHA4-202ENST00000409854 CCDC27Q2M243 656 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 RGPD2P0DJD1 1756 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 SENP3-EIF4A1A0A087X0R7 540 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 COL18A1P39060 1754 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 USP19O94966 1318 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 TRMT2AQ8IZ69 625 aaKnown RBP7.29□□□□□ -1.24
EPHA4-202ENST00000409854 ABCC6O95255 1503 aa7.29□□□□□ -1.24
EPHA4-202ENST00000409854 MAP3K19Q56UN5 1328 aa7.28□□□□□ -1.24
EPHA4-202ENST00000409854 FCHSD2O94868 740 aa7.28□□□□□ -1.24
EPHA4-202ENST00000409854 TCP11L2Q8N4U5 519 aa7.28□□□□□ -1.24
EPHA4-202ENST00000409854 RSPH6AQ9H0K4 717 aa7.28□□□□□ -1.24
EPHA4-202ENST00000409854 FAM208AQ9UK61 1670 aaKnown RBP7.28□□□□□ -1.24
EPHA4-202ENST00000409854 NLRP6P59044 892 aa7.28□□□□□ -1.24
EPHA4-202ENST00000409854 PSME1Q06323 249 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms