RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 FAM83GA6ND36 823 aa21.25■□□□□ 0.99
CBX3-203ENST00000409747 CCDC9Q9Y3X0 531 aaKnown RBP21.25■□□□□ 0.99
CBX3-203ENST00000409747 CCDC61Q9Y6R9 512 aa21.25■□□□□ 0.99
CBX3-203ENST00000409747 POLR3AO14802 1390 aaPredicted RBP21.25■□□□□ 0.99
CBX3-203ENST00000409747 CENPJQ9HC77 1338 aaPredicted RBP21.24■□□□□ 0.99
CBX3-203ENST00000409747 QRICH2Q9H0J4 1663 aa21.23■□□□□ 0.99
CBX3-203ENST00000409747 L3MBTL2Q969R5 705 aa21.22■□□□□ 0.99
CBX3-203ENST00000409747 PHRF1Q9P1Y6 1649 aaKnown RBP21.21■□□□□ 0.99
CBX3-203ENST00000409747 BRWD3Q6RI45 1802 aa21.21■□□□□ 0.99
CBX3-203ENST00000409747 PLEKHG3A1L390 1219 aa21.21■□□□□ 0.99
CBX3-203ENST00000409747 SEPT12Q8IYM1 358 aa21.21■□□□□ 0.99
CBX3-203ENST00000409747 BTG4Q9NY30 223 aa21.21■□□□□ 0.99
CBX3-203ENST00000409747 TRPM1Q7Z4N2 1603 aa21.2■□□□□ 0.98
CBX3-203ENST00000409747 ACEP12821 1306 aa21.2■□□□□ 0.98
CBX3-203ENST00000409747 SRPK2P78362 688 aaKnown RBP21.2■□□□□ 0.98
CBX3-203ENST00000409747 ONECUT3O60422 494 aaPredicted RBP21.19■□□□□ 0.98
CBX3-203ENST00000409747 NBPF8Q3BBV2 869 aa21.18■□□□□ 0.98
CBX3-203ENST00000409747 PRDM11Q9NQV5 511 aa21.18■□□□□ 0.98
CBX3-203ENST00000409747 PPIP5K1Q6PFW1 1433 aa21.18■□□□□ 0.98
CBX3-203ENST00000409747 BLMP54132 1417 aaPredicted RBP21.17■□□□□ 0.98
CBX3-203ENST00000409747 SIN3AQ96ST3 1273 aa21.17■□□□□ 0.98
CBX3-203ENST00000409747 A0A0G2JS52 829 aa21.15■□□□□ 0.98
CBX3-203ENST00000409747 MYT1Q01538 1121 aa21.15■□□□□ 0.98
CBX3-203ENST00000409747 NEUROD1Q13562 356 aa21.15■□□□□ 0.98
CBX3-203ENST00000409747 BRD4O60885 1362 aaPredicted RBP21.14■□□□□ 0.98
CBX3-203ENST00000409747 ROCK2O75116 1388 aaKnown RBP21.14■□□□□ 0.98
CBX3-203ENST00000409747 KIAA0232Q92628 1395 aa21.14■□□□□ 0.98
CBX3-203ENST00000409747 KRT27Q7Z3Y8 459 aa21.14■□□□□ 0.97
CBX3-203ENST00000409747 CABP2Q9NPB3 220 aa21.13■□□□□ 0.97
CBX3-203ENST00000409747 FAM98CQ17RN3 349 aaKnown RBP21.12■□□□□ 0.97
CBX3-203ENST00000409747 ABTB2Q8N961 1025 aa21.12■□□□□ 0.97
CBX3-203ENST00000409747 NRKQ7Z2Y5 1582 aa21.12■□□□□ 0.97
CBX3-203ENST00000409747 SF3B2Q13435 895 aaKnown RBP21.12■□□□□ 0.97
CBX3-203ENST00000409747 SPATA31A5Q5VU36 1347 aa21.12■□□□□ 0.97
CBX3-203ENST00000409747 EVC2Q86UK5 1308 aa21.12■□□□□ 0.97
CBX3-203ENST00000409747 SPATA31A7Q8IWB4 1347 aa21.12■□□□□ 0.97
CBX3-203ENST00000409747 NUTM2GQ5VZR2 741 aa21.11■□□□□ 0.97
CBX3-203ENST00000409747 ZRANB1Q9UGI0 708 aa21.1■□□□□ 0.97
CBX3-203ENST00000409747 USP19O94966 1318 aa21.09■□□□□ 0.97
CBX3-203ENST00000409747 ZC3H6P61129 1189 aaKnown RBP21.09■□□□□ 0.97
CBX3-203ENST00000409747 NLRP13Q86W25 1043 aa21.09■□□□□ 0.97
CBX3-203ENST00000409747 CPDO75976 1380 aa21.08■□□□□ 0.97
CBX3-203ENST00000409747 THSD7AQ9UPZ6 1657 aa21.08■□□□□ 0.97
CBX3-203ENST00000409747 USP6P35125 1406 aa21.08■□□□□ 0.96
CBX3-203ENST00000409747 CHRNA2Q15822 529 aa21.07■□□□□ 0.96
CBX3-203ENST00000409747 CABP1Q9NZU7 370 aa21.07■□□□□ 0.96
CBX3-203ENST00000409747 SPATA31A1Q5TZJ5 1347 aa21.06■□□□□ 0.96
CBX3-203ENST00000409747 STRN4Q9NRL3 753 aa21.05■□□□□ 0.96
CBX3-203ENST00000409747 LMO7Q8WWI1 1683 aa21.04■□□□□ 0.96
CBX3-203ENST00000409747 EVA1CP58658 441 aa21.04■□□□□ 0.96
CBX3-203ENST00000409747 SSH2Q76I76 1423 aa21.03■□□□□ 0.96
CBX3-203ENST00000409747 GCP02774 474 aa21.02■□□□□ 0.96
CBX3-203ENST00000409747 TONSLQ96HA7 1378 aa21.02■□□□□ 0.96
CBX3-203ENST00000409747 RGPD1P0DJD0 1748 aa21.02■□□□□ 0.95
CBX3-203ENST00000409747 CAMTA1Q9Y6Y1 1673 aa21.01■□□□□ 0.95
CBX3-203ENST00000409747 SBNO2Q9Y2G9 1366 aa21.01■□□□□ 0.95
CBX3-203ENST00000409747 DEFB132Q7Z7B7 95 aa21.01■□□□□ 0.95
CBX3-203ENST00000409747 SLIT3O75094 1523 aa21■□□□□ 0.95
CBX3-203ENST00000409747 BAG6P46379 1132 aa21■□□□□ 0.95
CBX3-203ENST00000409747 ZNF692Q9BU19 519 aaPredicted RBP21■□□□□ 0.95
CBX3-203ENST00000409747 AKAP12Q02952 1782 aa21■□□□□ 0.95
CBX3-203ENST00000409747 PIK3C2AO00443 1686 aa21■□□□□ 0.95
CBX3-203ENST00000409747 SRCAPQ6ZRS2 3230 aa21■□□□□ 0.95
CBX3-203ENST00000409747 NLRP6P59044 892 aa20.99■□□□□ 0.95
CBX3-203ENST00000409747 BARGINQ6ZT62 677 aa20.98■□□□□ 0.95
CBX3-203ENST00000409747 CARD11Q9BXL7 1154 aa20.98■□□□□ 0.95
CBX3-203ENST00000409747 USP35Q9P2H5 1018 aa20.97■□□□□ 0.95
CBX3-203ENST00000409747 COL5A2P05997 1499 aaPredicted RBP20.96■□□□□ 0.95
CBX3-203ENST00000409747 THRAP3Q9Y2W1 955 aaKnown RBP20.96■□□□□ 0.95
CBX3-203ENST00000409747 LARP1Q6PKG0 1096 aaKnown RBP20.95■□□□□ 0.94
CBX3-203ENST00000409747 TCP11L2Q8N4U5 519 aa20.95■□□□□ 0.94
CBX3-203ENST00000409747 TTC21AQ8NDW8 1320 aa20.95■□□□□ 0.94
CBX3-203ENST00000409747 AATKQ6ZMQ8 1374 aa20.95■□□□□ 0.94
CBX3-203ENST00000409747 TTC21BQ7Z4L5 1316 aa20.94■□□□□ 0.94
CBX3-203ENST00000409747 CPSF1Q10570 1443 aaKnown RBP20.94■□□□□ 0.94
CBX3-203ENST00000409747 TNS1Q9HBL0 1735 aaKnown RBP20.93■□□□□ 0.94
CBX3-203ENST00000409747 TRIM26Q12899 539 aaPredicted RBP20.93■□□□□ 0.94
CBX3-203ENST00000409747 FAM182BQ5T319 152 aa20.93■□□□□ 0.94
CBX3-203ENST00000409747 FAM196AQ6ZSG2 479 aa20.93■□□□□ 0.94
CBX3-203ENST00000409747 DISP2A7MBM2 1401 aa20.93■□□□□ 0.94
CBX3-203ENST00000409747 KCNH5Q8NCM2 988 aa20.92■□□□□ 0.94
CBX3-203ENST00000409747 KTN1Q86UP2 1357 aaKnown RBP20.92■□□□□ 0.94
CBX3-203ENST00000409747 CRB1P82279 1406 aa20.92■□□□□ 0.94
CBX3-203ENST00000409747 MON2Q7Z3U7 1717 aa20.92■□□□□ 0.94
CBX3-203ENST00000409747 ZBTB7CA1YPR0 619 aa20.92■□□□□ 0.94
CBX3-203ENST00000409747 PDE3BQ13370 1112 aa20.92■□□□□ 0.94
CBX3-203ENST00000409747 PARP4Q9UKK3 1724 aaKnown RBP20.91■□□□□ 0.94
CBX3-203ENST00000409747 COL18A1P39060 1754 aa20.89■□□□□ 0.93
CBX3-203ENST00000409747 EN1Q05925 392 aaPredicted RBP20.87■□□□□ 0.93
CBX3-203ENST00000409747 C11orf95C9JLR9 678 aaPredicted RBP20.87■□□□□ 0.93
CBX3-203ENST00000409747 ABCC6O95255 1503 aa20.86■□□□□ 0.93
CBX3-203ENST00000409747 TRIM37O94972 964 aa20.86■□□□□ 0.93
CBX3-203ENST00000409747 USP54Q70EL1 1684 aa20.86■□□□□ 0.93
CBX3-203ENST00000409747 TOM1L2Q6ZVM7 507 aa20.85■□□□□ 0.93
CBX3-203ENST00000409747 HDGFL2Q7Z4V5 671 aaPredicted RBP20.85■□□□□ 0.93
CBX3-203ENST00000409747 ARHGEF25Q86VW2 580 aa20.85■□□□□ 0.93
CBX3-203ENST00000409747 PUS7Q96PZ0 661 aaKnown RBP20.85■□□□□ 0.93
CBX3-203ENST00000409747 NFAT5O94916 1531 aa20.85■□□□□ 0.93
CBX3-203ENST00000409747 PARD3Q8TEW0 1356 aa20.85■□□□□ 0.93
CBX3-203ENST00000409747 WDR17Q8IZU2 1322 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms