RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 GPS2Q13227 327 aa10.08□□□□□ -0.8
SCN9A-203ENST00000409672 SDF4Q9BRK5 362 aa10.08□□□□□ -0.8
SCN9A-203ENST00000409672 C16orf71Q8IYS4 520 aaPredicted RBP10.07□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC158Q5M9N0 1113 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 PRDM11Q9NQV5 511 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 GNL3LQ9NVN8 582 aaKnown RBP10.07□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC173Q0VFZ6 552 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 PANK1Q8TE04 598 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 HSP90AB4PQ58FF6 505 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC18Q5T9S5 1454 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 SEPT7Q16181 437 aaKnown RBP10.07□□□□□ -0.8
SCN9A-203ENST00000409672 NGLY1Q96IV0 654 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC73Q6ZRK6 1079 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 FAM177A1Q8N128 213 aaPredicted RBP10.07□□□□□ -0.8
SCN9A-203ENST00000409672 RAI14Q9P0K7 980 aa10.07□□□□□ -0.8
SCN9A-203ENST00000409672 ZPR1O75312 459 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 REC8O95072 547 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 CNTROBQ8N137 903 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 MPNDQ8N594 471 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 RSPH4AQ5TD94 716 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC69A6NI79 296 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 MPRIPQ6WCQ1 1025 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 KIF15Q9NS87 1388 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC57Q2TAC2 916 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 CENPHQ9H3R5 247 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 DHX8Q14562 1220 aaKnown RBP10.06□□□□□ -0.8
SCN9A-203ENST00000409672 RNF214Q8ND24 703 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 DRC1Q96MC2 740 aa10.06□□□□□ -0.8
SCN9A-203ENST00000409672 DZIP1LQ8IYY4 767 aaKnown RBP10.05□□□□□ -0.8
SCN9A-203ENST00000409672 ENOX2Q16206 610 aaKnown RBP10.05□□□□□ -0.8
SCN9A-203ENST00000409672 SMG6Q86US8 1419 aaKnown RBP10.05□□□□□ -0.8
SCN9A-203ENST00000409672 DDX11L8A8MPP1 907 aa10.05□□□□□ -0.8
SCN9A-203ENST00000409672 LRP2BPQ9P2M1 347 aa10.05□□□□□ -0.8
SCN9A-203ENST00000409672 UACAQ9BZF9 1416 aa10.05□□□□□ -0.8
SCN9A-203ENST00000409672 TDO2P48775 406 aa10.05□□□□□ -0.8
SCN9A-203ENST00000409672 PLEKHO1Q53GL0 409 aaPredicted RBP10.05□□□□□ -0.8
SCN9A-203ENST00000409672 CRACR2BQ8N4Y2 399 aaPredicted RBP10.05□□□□□ -0.8
SCN9A-203ENST00000409672 PTPRGP23470 1445 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 PRAM1Q96QH2 718 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 SPC24Q8NBT2 197 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 ZNF622Q969S3 477 aaKnown RBP eCLIP10.04□□□□□ -0.86e-9■■■□□ 19.2
SCN9A-203ENST00000409672 TXLNAP40222 546 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 NACADO15069 1562 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 MYBBP1AQ9BQG0 1328 aaKnown RBP10.04□□□□□ -0.8
SCN9A-203ENST00000409672 MIS18AQ9NYP9 233 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 INTS3Q68E01 1043 aaKnown RBP10.04□□□□□ -0.8
SCN9A-203ENST00000409672 RRS1Q15050 365 aaKnown RBP10.04□□□□□ -0.8
SCN9A-203ENST00000409672 SOGA3Q5TF21 947 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 ERC1Q8IUD2 1116 aa10.04□□□□□ -0.8
SCN9A-203ENST00000409672 NINLQ9Y2I6 1382 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 TAX1BP1Q86VP1 789 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 RDXP35241 583 aaKnown RBP10.03□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC30Q5VVM6 783 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 IPO9Q96P70 1041 aaKnown RBP10.03□□□□□ -0.8
SCN9A-203ENST00000409672 DEF6Q9H4E7 631 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 MINDY4BA8MYZ0 360 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 MNS1Q8NEH6 495 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 DDX19BQ9UMR2 479 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 CCER2I3L3R5 266 aa10.03□□□□□ -0.8
SCN9A-203ENST00000409672 CLASRPQ8N2M8 674 aaKnown RBP10.02□□□□□ -0.8
SCN9A-203ENST00000409672 WIZO95785 1651 aa10.02□□□□□ -0.8
SCN9A-203ENST00000409672 BTBD11A6QL63 1104 aa10.02□□□□□ -0.8
SCN9A-203ENST00000409672 WDHD1O75717 1129 aaPredicted RBP10.02□□□□□ -0.8
SCN9A-203ENST00000409672 FAM13BQ9NYF5 915 aa10.02□□□□□ -0.8
SCN9A-203ENST00000409672 CCDC181Q5TID7 509 aa10.02□□□□□ -0.81
SCN9A-203ENST00000409672 USHBP1Q8N6Y0 703 aa10.02□□□□□ -0.81
SCN9A-203ENST00000409672 IDH1O75874 414 aaKnown RBP10.02□□□□□ -0.81
SCN9A-203ENST00000409672 TMOD2Q9NZR1 351 aa10.02□□□□□ -0.81
SCN9A-203ENST00000409672 FMN1Q68DA7 1419 aa10.02□□□□□ -0.81
SCN9A-203ENST00000409672 SULT6B1Q6IMI4 303 aa10.02□□□□□ -0.81
SCN9A-203ENST00000409672 UBA5Q9GZZ9 404 aa10.02□□□□□ -0.81
SCN9A-203ENST00000409672 DHX57Q6P158 1386 aaKnown RBP10.02□□□□□ -0.81
SCN9A-203ENST00000409672 POLR3DP05423 398 aaPredicted RBP10.02□□□□□ -0.81
SCN9A-203ENST00000409672 TIMELESSQ9UNS1 1208 aa10.01□□□□□ -0.81
SCN9A-203ENST00000409672 NFKBIBQ15653 356 aa10.01□□□□□ -0.81
SCN9A-203ENST00000409672 CCDC82Q8N4S0 544 aa10.01□□□□□ -0.81
SCN9A-203ENST00000409672 CENPQQ7L2Z9 268 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-203ENST00000409672 API5Q9BZZ5 524 aaKnown RBP10.01□□□□□ -0.81
SCN9A-203ENST00000409672 ROCK1Q13464 1354 aa10.01□□□□□ -0.81
SCN9A-203ENST00000409672 FAM193AP78312 1265 aa10.01□□□□□ -0.81
SCN9A-203ENST00000409672 ZNF530Q6P9A1 599 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-203ENST00000409672 ZNF644Q9H582 1327 aaPredicted RBP10□□□□□ -0.81
SCN9A-203ENST00000409672 RUNDC1Q96C34 613 aa10□□□□□ -0.81
SCN9A-203ENST00000409672 DDX24Q9GZR7 859 aaKnown RBP eCLIP10□□□□□ -0.81
SCN9A-203ENST00000409672 TNNT1P13805 278 aa10□□□□□ -0.81
SCN9A-203ENST00000409672 NOM1Q5C9Z4 860 aaKnown RBP10□□□□□ -0.81
SCN9A-203ENST00000409672 RPGRQ92834 1020 aaKnown RBP10□□□□□ -0.81
SCN9A-203ENST00000409672 HDGFL1Q5TGJ6 251 aa10□□□□□ -0.81
SCN9A-203ENST00000409672 ARHGAP5Q13017 1502 aa10□□□□□ -0.81
SCN9A-203ENST00000409672 SLC4A2P04920 1241 aa10□□□□□ -0.81
SCN9A-203ENST00000409672 RAD54L2Q9Y4B4 1467 aa10□□□□□ -0.81
SCN9A-203ENST00000409672 CALRP27797 417 aaKnown RBP9.99□□□□□ -0.81
SCN9A-203ENST00000409672 SPG7Q9UQ90 795 aa9.99□□□□□ -0.81
SCN9A-203ENST00000409672 TAF3Q5VWG9 929 aa9.99□□□□□ -0.81
SCN9A-203ENST00000409672 CDK19Q9BWU1 502 aa9.99□□□□□ -0.81
SCN9A-203ENST00000409672 GNAI1P63096 354 aa9.99□□□□□ -0.81
SCN9A-203ENST00000409672 MAP3K9P80192 1104 aa9.99□□□□□ -0.81
SCN9A-203ENST00000409672 CCDC96Q2M329 555 aa9.99□□□□□ -0.81
SCN9A-203ENST00000409672 PRKAR2BP31323 418 aa9.99□□□□□ -0.81
SCN9A-203ENST00000409672 RBM26Q5T8P6 1007 aaKnown RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms