RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 MPHOSPH8Q99549 860 aa9.68□□□□□ -0.86
USP47-203ENST00000399455 BCL11BQ9C0K0 894 aaPredicted RBP9.68□□□□□ -0.86
USP47-203ENST00000399455 EXOC5O00471 708 aa9.68□□□□□ -0.86
USP47-203ENST00000399455 ANO2Q9NQ90 1003 aa9.68□□□□□ -0.86
USP47-203ENST00000399455 RALYLQ86SE5 291 aaKnown RBP9.68□□□□□ -0.86
USP47-203ENST00000399455 TSR1Q2NL82 804 aaKnown RBP9.68□□□□□ -0.86
USP47-203ENST00000399455 CABP1Q9NZU7 370 aa9.68□□□□□ -0.86
USP47-203ENST00000399455 KIF21AQ7Z4S6 1674 aa9.67□□□□□ -0.86
USP47-203ENST00000399455 A0A087WZG4 1122 aa9.67□□□□□ -0.86
USP47-203ENST00000399455 POLD1P28340 1107 aa9.67□□□□□ -0.86
USP47-203ENST00000399455 WDR7Q9Y4E6 1490 aa9.67□□□□□ -0.86
USP47-203ENST00000399455 RAPGEF6Q8TEU7 1601 aa9.67□□□□□ -0.86
USP47-203ENST00000399455 IGHMBP2P38935 993 aaKnown RBP9.67□□□□□ -0.86
USP47-203ENST00000399455 SAFBQ15424 915 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP47-203ENST00000399455 PEG3Q9GZU2 1588 aa9.67□□□□□ -0.86
USP47-203ENST00000399455 NUDT16Q96DE0 195 aaKnown RBP9.67□□□□□ -0.86
USP47-203ENST00000399455 AMOTL2Q9Y2J4 779 aa9.67□□□□□ -0.86
USP47-203ENST00000399455 PHF14O94880 888 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 RPGRQ92834 1020 aaKnown RBP9.66□□□□□ -0.86
USP47-203ENST00000399455 ATP6V1DQ9Y5K8 247 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 BTBD11A6QL63 1104 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 ZC3H6P61129 1189 aaKnown RBP9.66□□□□□ -0.86
USP47-203ENST00000399455 GLIPR1L2Q4G1C9 344 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 PHF8Q9UPP1 1060 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 TTLL12Q14166 644 aaPredicted RBP9.66□□□□□ -0.86
USP47-203ENST00000399455 ZSCAN25Q6NSZ9 544 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 CCDC7Q96M83 1385 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 KRT28Q7Z3Y7 464 aa9.66□□□□□ -0.86
USP47-203ENST00000399455 AMOTQ4VCS5 1084 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 HIP1O00291 1037 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 GNAI3P08754 354 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 BICDL1Q6ZP65 573 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 SPRYD3Q8NCJ5 442 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 CFAP74Q9C0B2 1584 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 UHRF1BP1Q6BDS2 1440 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 REC8O95072 547 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 CCDC57Q2TAC2 916 aa9.65□□□□□ -0.86
USP47-203ENST00000399455 BIVM-ERCC5R4GMW8 1640 aa9.65□□□□□ -0.87
USP47-203ENST00000399455 ZNF608Q9ULD9 1512 aaPredicted RBP9.65□□□□□ -0.87
USP47-203ENST00000399455 CTTNBP2Q8WZ74 1663 aa9.65□□□□□ -0.87
USP47-203ENST00000399455 PTPN23Q9H3S7 1636 aa9.65□□□□□ -0.87
USP47-203ENST00000399455 ST5P78524 1137 aa9.65□□□□□ -0.87
USP47-203ENST00000399455 ZNF518AQ6AHZ1 1483 aa9.64□□□□□ -0.87
USP47-203ENST00000399455 TPM1P09493 284 aa9.64□□□□□ -0.87
USP47-203ENST00000399455 PRXQ9BXM0 1461 aa9.64□□□□□ -0.87
USP47-203ENST00000399455 PES1O00541 588 aaKnown RBP9.64□□□□□ -0.87
USP47-203ENST00000399455 TPM3P06753 285 aa9.64□□□□□ -0.87
USP47-203ENST00000399455 HSP90AB3PQ58FF7 597 aa9.64□□□□□ -0.87
USP47-203ENST00000399455 PCF11O94913 1555 aaKnown RBP9.64□□□□□ -0.87
USP47-203ENST00000399455 CEBPAP49715 358 aaPredicted RBP9.64□□□□□ -0.87
USP47-203ENST00000399455 NOL8Q76FK4 1167 aaKnown RBP9.64□□□□□ -0.87
USP47-203ENST00000399455 DZIP1LQ8IYY4 767 aaKnown RBP9.64□□□□□ -0.87
USP47-203ENST00000399455 MPHOSPH10O00566 681 aaKnown RBP9.64□□□□□ -0.87
USP47-203ENST00000399455 ANKRD20A12PQ8NF67 263 aa9.63□□□□□ -0.87
USP47-203ENST00000399455 ARAP1Q96P48 1450 aa9.63□□□□□ -0.87
USP47-203ENST00000399455 ZSCAN29Q8IWY8 852 aaPredicted RBP9.63□□□□□ -0.87
USP47-203ENST00000399455 NACAP1Q9BZK3 213 aa9.63□□□□□ -0.87
USP47-203ENST00000399455 CCDC61Q9Y6R9 512 aa9.63□□□□□ -0.87
USP47-203ENST00000399455 MCTP1Q6DN14 999 aa9.63□□□□□ -0.87
USP47-203ENST00000399455 CNTROBQ8N137 903 aa9.63□□□□□ -0.87
USP47-203ENST00000399455 APAF1O14727 1248 aa9.63□□□□□ -0.87
USP47-203ENST00000399455 EIF4G3O43432 1585 aaKnown RBP9.62□□□□□ -0.87
USP47-203ENST00000399455 C8orf37Q96NL8 207 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 SULT6B1Q6IMI4 303 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 TEX13AQ9BXU3 409 aaPredicted RBP9.62□□□□□ -0.87
USP47-203ENST00000399455 NPHP3Q7Z494 1330 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 MYL6BP14649 208 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 SLF2Q8IX21 1173 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 GNAT3A8MTJ3 354 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 PRKAR2BP31323 418 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 SLC4A3P48751 1232 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 AAMPQ13685 434 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 HDGFL1Q5TGJ6 251 aa9.62□□□□□ -0.87
USP47-203ENST00000399455 ATP2B2Q01814 1243 aa9.61□□□□□ -0.87
USP47-203ENST00000399455 UHRF1BP1LA0JNW5 1464 aa9.61□□□□□ -0.87
USP47-203ENST00000399455 BCL2L13Q9BXK5 485 aa9.61□□□□□ -0.87
USP47-203ENST00000399455 A0A0U1RQG5 324 aaPredicted RBP9.61□□□□□ -0.87
USP47-203ENST00000399455 RFC4P35249 363 aa9.61□□□□□ -0.87
USP47-203ENST00000399455 PBRM1Q86U86 1689 aa9.61□□□□□ -0.87
USP47-203ENST00000399455 PSMA5P28066 241 aa9.61□□□□□ -0.87
USP47-203ENST00000399455 ZNF287Q9HBT7 754 aa9.6□□□□□ -0.87
USP47-203ENST00000399455 PDE4CQ08493 712 aa9.6□□□□□ -0.87
USP47-203ENST00000399455 CENPQQ7L2Z9 268 aaPredicted RBP9.6□□□□□ -0.87
USP47-203ENST00000399455 CLASRPQ8N2M8 674 aaKnown RBP9.6□□□□□ -0.87
USP47-203ENST00000399455 ANKIB1Q9P2G1 1089 aa9.6□□□□□ -0.87
USP47-203ENST00000399455 MSNP26038 577 aaKnown RBP9.6□□□□□ -0.87
USP47-203ENST00000399455 CCT4P50991 539 aaKnown RBP9.6□□□□□ -0.87
USP47-203ENST00000399455 WDR97A6NE52 1622 aa9.6□□□□□ -0.87
USP47-203ENST00000399455 CAVIN4Q5BKX8 364 aa9.59□□□□□ -0.87
USP47-203ENST00000399455 FSD1Q9BTV5 496 aa9.59□□□□□ -0.87
USP47-203ENST00000399455 PCMTD1Q96MG8 357 aaPredicted RBP9.59□□□□□ -0.87
USP47-203ENST00000399455 WDR62O43379 1518 aa9.59□□□□□ -0.87
USP47-203ENST00000399455 KDM5BQ9UGL1 1544 aa9.59□□□□□ -0.87
USP47-203ENST00000399455 DNAJC2Q99543 621 aaKnown RBP9.59□□□□□ -0.87
USP47-203ENST00000399455 DHX29Q7Z478 1369 aaKnown RBP9.59□□□□□ -0.87
USP47-203ENST00000399455 INTS3Q68E01 1043 aaKnown RBP9.59□□□□□ -0.87
USP47-203ENST00000399455 DUOX2Q9NRD8 1548 aa9.59□□□□□ -0.87
USP47-203ENST00000399455 SMARCC1Q92922 1105 aaPredicted RBP9.59□□□□□ -0.87
USP47-203ENST00000399455 DNAI2Q9GZS0 605 aa9.58□□□□□ -0.88
USP47-203ENST00000399455 MTMR7Q9Y216 660 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms