RNA–Protein interactions for RNA: ENST00000397386.7

LMCD1-202, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2 BASIC

Gene LMCD1, Length 1,501 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-202ENST00000397386 ANKRD26Q9UPS8 1709 aa17.15■□□□□ 0.34
LMCD1-202ENST00000397386 TTC21BQ7Z4L5 1316 aa17.15■□□□□ 0.34
LMCD1-202ENST00000397386 KIF20BQ96Q89 1820 aa17.15■□□□□ 0.34
LMCD1-202ENST00000397386 PPP2R1AP30153 589 aa17.14■□□□□ 0.33
LMCD1-202ENST00000397386 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.13■□□□□ 0.33
LMCD1-202ENST00000397386 ORAI2Q96SN7 254 aa17.13■□□□□ 0.33
LMCD1-202ENST00000397386 MRS2Q9HD23 443 aa17.13■□□□□ 0.33
LMCD1-202ENST00000397386 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
LMCD1-202ENST00000397386 GGNBP2Q9H3C7 697 aa17.12■□□□□ 0.33
LMCD1-202ENST00000397386 SLAIN2Q9P270 581 aa17.11■□□□□ 0.33
LMCD1-202ENST00000397386 USP31Q70CQ4 1352 aa17.1■□□□□ 0.33
LMCD1-202ENST00000397386 PSME1Q06323 249 aa17.1■□□□□ 0.33
LMCD1-202ENST00000397386 CCDC184Q52MB2 194 aa17.1■□□□□ 0.33
LMCD1-202ENST00000397386 NME9Q86XW9 330 aa17.1■□□□□ 0.33
LMCD1-202ENST00000397386 COG3Q96JB2 828 aa17.09■□□□□ 0.33
LMCD1-202ENST00000397386 OVOS2A0A0J9YW53 1432 aa17.08■□□□□ 0.32
LMCD1-202ENST00000397386 OVOS2Q6IE36 1432 aa17.08■□□□□ 0.32
LMCD1-202ENST00000397386 FOXO3O43524 673 aa17.07■□□□□ 0.32
LMCD1-202ENST00000397386 AATKQ6ZMQ8 1374 aa17.07■□□□□ 0.32
LMCD1-202ENST00000397386 NPHP3Q7Z494 1330 aa17.06■□□□□ 0.32
LMCD1-202ENST00000397386 USP54Q70EL1 1684 aa17.06■□□□□ 0.32
LMCD1-202ENST00000397386 BRINP3Q76B58 766 aa17.06■□□□□ 0.32
LMCD1-202ENST00000397386 PNISRQ8TF01 805 aaKnown RBP17.05■□□□□ 0.32
LMCD1-202ENST00000397386 PIK3C2AO00443 1686 aa17.04■□□□□ 0.32
LMCD1-202ENST00000397386 KRT28Q7Z3Y7 464 aa17.04■□□□□ 0.32
LMCD1-202ENST00000397386 SBNO1A3KN83 1393 aa17.03■□□□□ 0.32
LMCD1-202ENST00000397386 TRPM3Q9HCF6 1732 aaPredicted RBP17.03■□□□□ 0.32
LMCD1-202ENST00000397386 TNNT2P45379 298 aaPredicted RBP17.03■□□□□ 0.32
LMCD1-202ENST00000397386 ABTB2Q8N961 1025 aa17.03■□□□□ 0.32
LMCD1-202ENST00000397386 IQSEC2Q5JU85 1478 aa17.03■□□□□ 0.32
LMCD1-202ENST00000397386 MTHFSP49914 203 aa17.02■□□□□ 0.32
LMCD1-202ENST00000397386 ZRANB1Q9UGI0 708 aa17.02■□□□□ 0.32
LMCD1-202ENST00000397386 SMG6Q86US8 1419 aaKnown RBP17.02■□□□□ 0.31
LMCD1-202ENST00000397386 INSRP06213 1382 aa17.02■□□□□ 0.31
LMCD1-202ENST00000397386 PAK3O75914 559 aaPredicted RBP17.01■□□□□ 0.31
LMCD1-202ENST00000397386 NLRP6P59044 892 aa17.01■□□□□ 0.31
LMCD1-202ENST00000397386 CFAP53Q96M91 514 aa17.01■□□□□ 0.31
LMCD1-202ENST00000397386 PXDNQ92626 1479 aa17.01■□□□□ 0.31
LMCD1-202ENST00000397386 PNPLA6Q8IY17 1366 aa17■□□□□ 0.31
LMCD1-202ENST00000397386 POLKQ9UBT6 870 aa17■□□□□ 0.31
LMCD1-202ENST00000397386 SOS2Q07890 1332 aaPredicted RBP16.98■□□□□ 0.31
LMCD1-202ENST00000397386 FAM9BQ8IZU0 186 aa16.98■□□□□ 0.31
LMCD1-202ENST00000397386 ALS2Q96Q42 1657 aa16.98■□□□□ 0.31
LMCD1-202ENST00000397386 MARF1Q9Y4F3 1742 aaKnown RBP16.98■□□□□ 0.31
LMCD1-202ENST00000397386 XPCQ01831 940 aaPredicted RBP16.97■□□□□ 0.31
LMCD1-202ENST00000397386 CDK12Q9NYV4 1490 aaPredicted RBP16.97■□□□□ 0.31
LMCD1-202ENST00000397386 MAP2P11137 1827 aaKnown RBP16.97■□□□□ 0.31
LMCD1-202ENST00000397386 TNS3Q68CZ2 1445 aa16.97■□□□□ 0.31
LMCD1-202ENST00000397386 NHSL1Q5SYE7 1610 aa16.96■□□□□ 0.31
LMCD1-202ENST00000397386 TOM1O60784 492 aa16.96■□□□□ 0.31
LMCD1-202ENST00000397386 KCNH5Q8NCM2 988 aa16.96■□□□□ 0.31
LMCD1-202ENST00000397386 ARHGEF10O15013 1369 aa16.96■□□□□ 0.31
LMCD1-202ENST00000397386 KIF24Q5T7B8 1368 aa16.96■□□□□ 0.31
LMCD1-202ENST00000397386 USP19O94966 1318 aa16.96■□□□□ 0.31
LMCD1-202ENST00000397386 SPATA31A3Q5VYP0 1347 aa16.96■□□□□ 0.31
LMCD1-202ENST00000397386 COL3A1P02461 1466 aaPredicted RBP16.95■□□□□ 0.3
LMCD1-202ENST00000397386 WDR43Q15061 677 aaKnown RBP eCLIP16.95■□□□□ 0.3
LMCD1-202ENST00000397386 SLIT3O75094 1523 aa16.94■□□□□ 0.3
LMCD1-202ENST00000397386 DDX17Q92841 729 aaKnown RBP16.94■□□□□ 0.3
LMCD1-202ENST00000397386 NUTM2GQ5VZR2 741 aa16.93■□□□□ 0.3
LMCD1-202ENST00000397386 EMILIN1Q9Y6C2 1016 aa16.93■□□□□ 0.3
LMCD1-202ENST00000397386 ROBO1Q9Y6N7 1651 aa16.93■□□□□ 0.3
LMCD1-202ENST00000397386 RRS1Q15050 365 aaKnown RBP16.92■□□□□ 0.3
LMCD1-202ENST00000397386 YTHDC1Q96MU7 727 aaKnown RBP16.92■□□□□ 0.3
LMCD1-202ENST00000397386 AHDC1Q5TGY3 1603 aaPredicted RBP16.92■□□□□ 0.3
LMCD1-202ENST00000397386 NFAT5O94916 1531 aa16.92■□□□□ 0.3
LMCD1-202ENST00000397386 SHPRHQ149N8 1683 aa16.92■□□□□ 0.3
LMCD1-202ENST00000397386 FBLN1P23142 703 aa16.91■□□□□ 0.3
LMCD1-202ENST00000397386 NUDCQ9Y266 331 aa16.91■□□□□ 0.3
LMCD1-202ENST00000397386 MED1Q15648 1581 aaPredicted RBP16.91■□□□□ 0.3
LMCD1-202ENST00000397386 MAP3K19Q56UN5 1328 aa16.91■□□□□ 0.3
LMCD1-202ENST00000397386 DIAPH1O60610 1272 aaKnown RBP16.91■□□□□ 0.3
LMCD1-202ENST00000397386 LMOD2Q6P5Q4 547 aa16.91■□□□□ 0.3
LMCD1-202ENST00000397386 ADAMTS8Q9UP79 889 aa16.91■□□□□ 0.3
LMCD1-202ENST00000397386 RTL1A6NKG5 1358 aa16.9■□□□□ 0.3
LMCD1-202ENST00000397386 FLT4P35916 1363 aa16.9■□□□□ 0.3
LMCD1-202ENST00000397386 BLMP54132 1417 aaPredicted RBP16.9■□□□□ 0.3
LMCD1-202ENST00000397386 PPM1GO15355 546 aaPredicted RBP16.9■□□□□ 0.3
LMCD1-202ENST00000397386 GCP02774 474 aa16.9■□□□□ 0.3
LMCD1-202ENST00000397386 CERKQ8TCT0 537 aa16.9■□□□□ 0.3
LMCD1-202ENST00000397386 PHRF1Q9P1Y6 1649 aaKnown RBP16.89■□□□□ 0.29
LMCD1-202ENST00000397386 LRRC59Q96AG4 307 aaKnown RBP16.87■□□□□ 0.29
LMCD1-202ENST00000397386 PEAK1Q9H792 1746 aa16.87■□□□□ 0.29
LMCD1-202ENST00000397386 SOX12O15370 315 aa16.86■□□□□ 0.29
LMCD1-202ENST00000397386 IL13P35225 146 aa16.86■□□□□ 0.29
LMCD1-202ENST00000397386 AMPHP49418 695 aa16.86■□□□□ 0.29
LMCD1-202ENST00000397386 HNRNPUQ00839 825 aaKnown RBP eCLIP16.86■□□□□ 0.29
LMCD1-202ENST00000397386 ARHGEF25Q86VW2 580 aa16.86■□□□□ 0.29
LMCD1-202ENST00000397386 CRYBG1Q9Y4K1 1723 aa16.85■□□□□ 0.29
LMCD1-202ENST00000397386 UBAP1LF5GYI3 381 aa16.85■□□□□ 0.29
LMCD1-202ENST00000397386 HOXC9P31274 260 aa16.85■□□□□ 0.29
LMCD1-202ENST00000397386 LTN1O94822 1766 aa16.84■□□□□ 0.29
LMCD1-202ENST00000397386 U2AF1L5P0DN76 240 aaPredicted RBP16.84■□□□□ 0.29
LMCD1-202ENST00000397386 U2AF1Q01081 240 aaKnown RBP eCLIP16.84■□□□□ 0.29
LMCD1-202ENST00000397386 HSP90AB2PQ58FF8 381 aa16.84■□□□□ 0.29
LMCD1-202ENST00000397386 IP6K1Q92551 441 aa16.84■□□□□ 0.29
LMCD1-202ENST00000397386 PNNQ9H307 717 aaKnown RBP16.84■□□□□ 0.29
LMCD1-202ENST00000397386 ABCC6O95255 1503 aa16.83■□□□□ 0.29
LMCD1-202ENST00000397386 CPDO75976 1380 aa16.83■□□□□ 0.28
LMCD1-202ENST00000397386 ZBED9Q6R2W3 1325 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms