RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 SETD1BQ9UPS6 1966 aaKnown RBP11.05□□□□□ -0.64
RTN4-206ENST00000394611 MCM4P33991 863 aa11.05□□□□□ -0.64
RTN4-206ENST00000394611 TMEM131LA2VDJ0 1609 aa11.04□□□□□ -0.64
RTN4-206ENST00000394611 CAVIN1Q6NZI2 390 aaKnown RBP11.04□□□□□ -0.64
RTN4-206ENST00000394611 GRPEL1Q9HAV7 217 aa11.04□□□□□ -0.64
RTN4-206ENST00000394611 MAPK8IP3Q9UPT6 1336 aa11.04□□□□□ -0.64
RTN4-206ENST00000394611 NLRP1Q9C000 1473 aa11.04□□□□□ -0.64
RTN4-206ENST00000394611 CHMP5Q9NZZ3 219 aa11.03□□□□□ -0.64
RTN4-206ENST00000394611 ADGRB3O60242 1522 aa11.03□□□□□ -0.64
RTN4-206ENST00000394611 A2ML1A8K2U0 1454 aa11.03□□□□□ -0.64
RTN4-206ENST00000394611 CALD1Q05682 793 aaKnown RBP11.03□□□□□ -0.64
RTN4-206ENST00000394611 CHMP3Q9Y3E7 222 aa11.03□□□□□ -0.64
RTN4-206ENST00000394611 SPINK5Q9NQ38 1064 aaPredicted RBP11.03□□□□□ -0.64
RTN4-206ENST00000394611 TRAK1Q9UPV9 953 aa11.03□□□□□ -0.64
RTN4-206ENST00000394611 UBR1Q8IWV7 1749 aa11.03□□□□□ -0.64
RTN4-206ENST00000394611 UHRF1BP1Q6BDS2 1440 aa11.03□□□□□ -0.64
RTN4-206ENST00000394611 CEP170BQ9Y4F5 1589 aaPredicted RBP11.02□□□□□ -0.64
RTN4-206ENST00000394611 HSPA2P54652 639 aa11.02□□□□□ -0.65
RTN4-206ENST00000394611 PPP2R1AP30153 589 aa11.02□□□□□ -0.65
RTN4-206ENST00000394611 XPCQ01831 940 aaPredicted RBP11.02□□□□□ -0.65
RTN4-206ENST00000394611 BRD4O60885 1362 aaPredicted RBP11.02□□□□□ -0.65
RTN4-206ENST00000394611 NASPP49321 788 aaPredicted RBP11.02□□□□□ -0.65
RTN4-206ENST00000394611 FAM177BA6PVY3 158 aa11.01□□□□□ -0.65
RTN4-206ENST00000394611 PMFBP1Q8TBY8 1022 aa11.01□□□□□ -0.65
RTN4-206ENST00000394611 THEMISQ8N1K5 641 aaPredicted RBP11□□□□□ -0.65
RTN4-206ENST00000394611 CFAP53Q96M91 514 aa11□□□□□ -0.65
RTN4-206ENST00000394611 ADGRF5Q8IZF2 1346 aa11□□□□□ -0.65
RTN4-206ENST00000394611 IGSF3O75054 1194 aa11□□□□□ -0.65
RTN4-206ENST00000394611 MRE11P49959 708 aa11□□□□□ -0.65
RTN4-206ENST00000394611 LTKP29376 864 aa10.99□□□□□ -0.65
RTN4-206ENST00000394611 RIMS2Q9UQ26 1411 aa10.99□□□□□ -0.65
RTN4-206ENST00000394611 DTNBO60941 627 aa10.99□□□□□ -0.65
RTN4-206ENST00000394611 TMEM2Q9UHN6 1383 aa10.99□□□□□ -0.65
RTN4-206ENST00000394611 DUSP27Q5VZP5 1158 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 ZNF428Q96B54 188 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 NEXMIFQ5QGS0 1516 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 DDX11L8A8MPP1 907 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 TXNDC2Q86VQ3 553 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 DMRT2Q9Y5R5 561 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 ZNF142P52746 1687 aaPredicted RBP10.98□□□□□ -0.65
RTN4-206ENST00000394611 CGNL1Q0VF96 1302 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 PPLO60437 1756 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 E9PSI1 815 aa10.98□□□□□ -0.65
RTN4-206ENST00000394611 RBM42Q9BTD8 480 aaKnown RBP10.98□□□□□ -0.65
RTN4-206ENST00000394611 LMTK3Q96Q04 1460 aa10.97□□□□□ -0.65
RTN4-206ENST00000394611 RPGRIP1LQ68CZ1 1315 aa10.97□□□□□ -0.65
RTN4-206ENST00000394611 IFT172Q9UG01 1749 aa10.97□□□□□ -0.65
RTN4-206ENST00000394611 TCP11L2Q8N4U5 519 aa10.96□□□□□ -0.65
RTN4-206ENST00000394611 ZFYVE9O95405 1425 aa10.96□□□□□ -0.65
RTN4-206ENST00000394611 NEURL4Q96JN8 1562 aa10.96□□□□□ -0.65
RTN4-206ENST00000394611 NCKAP5LQ9HCH0 1330 aa10.96□□□□□ -0.65
RTN4-206ENST00000394611 PRPF40AO75400 957 aaKnown RBP10.96□□□□□ -0.65
RTN4-206ENST00000394611 SRPK2P78362 688 aaKnown RBP10.96□□□□□ -0.65
RTN4-206ENST00000394611 AEBP2Q6ZN18 517 aaPredicted RBP10.96□□□□□ -0.65
RTN4-206ENST00000394611 KDM5AP29375 1690 aaKnown RBP10.96□□□□□ -0.66
RTN4-206ENST00000394611 VGFO15240 615 aaPredicted RBP10.96□□□□□ -0.66
RTN4-206ENST00000394611 CDK11BP21127 795 aaKnown RBP10.96□□□□□ -0.66
RTN4-206ENST00000394611 PCDHB15Q9Y5E8 787 aa10.96□□□□□ -0.66
RTN4-206ENST00000394611 EID1Q9Y6B2 187 aa10.95□□□□□ -0.66
RTN4-206ENST00000394611 SLC4A10Q6U841 1118 aa10.95□□□□□ -0.66
RTN4-206ENST00000394611 CHAMP1Q96JM3 812 aa10.95□□□□□ -0.66
RTN4-206ENST00000394611 SSFA2P28290 1259 aa10.95□□□□□ -0.66
RTN4-206ENST00000394611 CDCA8Q53HL2 280 aa10.95□□□□□ -0.66
RTN4-206ENST00000394611 CFAP70Q5T0N1 1121 aa10.95□□□□□ -0.66
RTN4-206ENST00000394611 DRC7Q8IY82 874 aa10.95□□□□□ -0.66
RTN4-206ENST00000394611 DZIP1LQ8IYY4 767 aaKnown RBP10.95□□□□□ -0.66
RTN4-206ENST00000394611 SLIT1O75093 1534 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 ARHGAP23Q9P227 1491 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 ZKSCAN2Q63HK3 967 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 ANKLE2Q86XL3 938 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 TSC1Q92574 1164 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 PRAG1Q86YV5 1406 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 UQCRHLA0A096LP55 91 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 UQCRHP07919 91 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 RLBP1P12271 317 aa10.94□□□□□ -0.66
RTN4-206ENST00000394611 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.94□□□□□ -0.66
RTN4-206ENST00000394611 RRP9O43818 475 aaKnown RBP10.93□□□□□ -0.66
RTN4-206ENST00000394611 HDGFP51858 240 aaKnown RBP10.93□□□□□ -0.66
RTN4-206ENST00000394611 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.93□□□□□ -0.661e-7■■■□□ 14.8
RTN4-206ENST00000394611 RBM27Q9P2N5 1060 aaKnown RBP10.93□□□□□ -0.66
RTN4-206ENST00000394611 TMEM132EQ6IEE7 984 aa10.93□□□□□ -0.66
RTN4-206ENST00000394611 SLC26A8Q96RN1 970 aa10.93□□□□□ -0.66
RTN4-206ENST00000394611 NUTM2FA1L443 756 aa10.93□□□□□ -0.66
RTN4-206ENST00000394611 TNPO1Q92973 898 aaKnown RBP10.93□□□□□ -0.66
RTN4-206ENST00000394611 EXOSC9Q06265 439 aaKnown RBP10.92□□□□□ -0.66
RTN4-206ENST00000394611 SLFN5Q08AF3 891 aa10.92□□□□□ -0.66
RTN4-206ENST00000394611 MYOM2P54296 1465 aa10.92□□□□□ -0.66
RTN4-206ENST00000394611 PLEKHH1Q9ULM0 1364 aa10.92□□□□□ -0.66
RTN4-206ENST00000394611 SCAF11Q99590 1463 aaKnown RBP10.92□□□□□ -0.66
RTN4-206ENST00000394611 NECTIN2Q92692 538 aa10.92□□□□□ -0.66
RTN4-206ENST00000394611 CBX1P83916 185 aa10.92□□□□□ -0.66
RTN4-206ENST00000394611 ZBTB9Q96C00 473 aa10.92□□□□□ -0.66
RTN4-206ENST00000394611 NPHP1O15259 732 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 ZNF830Q96NB3 372 aaPredicted RBP10.91□□□□□ -0.66
RTN4-206ENST00000394611 TRIM6-TRIM34B2RNG4 842 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 MTHFSP49914 203 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 ZNF592Q92610 1267 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 GDPD2Q9HCC8 539 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 PIK3C2GO75747 1445 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 HMOX1P09601 288 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms