RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 KIF16BQ96L93 1317 aa12.65□□□□□ -0.38
COL17A1-203ENST00000393211 CDC42BPGQ6DT37 1551 aa12.65□□□□□ -0.39
COL17A1-203ENST00000393211 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
COL17A1-203ENST00000393211 BRPF1P55201 1214 aaPredicted RBP12.64□□□□□ -0.39
COL17A1-203ENST00000393211 ALDH1L2Q3SY69 923 aa12.64□□□□□ -0.39
COL17A1-203ENST00000393211 BCL2L13Q9BXK5 485 aa12.64□□□□□ -0.39
COL17A1-203ENST00000393211 CHMP4BQ9H444 224 aaKnown RBP12.64□□□□□ -0.39
COL17A1-203ENST00000393211 SLC52A1Q9NWF4 448 aa12.64□□□□□ -0.39
COL17A1-203ENST00000393211 TERF2IPQ9NYB0 399 aa12.64□□□□□ -0.39
COL17A1-203ENST00000393211 CFAP65Q6ZU64 1925 aaKnown RBP12.64□□□□□ -0.39
COL17A1-203ENST00000393211 A0A1W2PP64 1363 aa12.64□□□□□ -0.39
COL17A1-203ENST00000393211 PNPLA6Q8IY17 1366 aa12.64□□□□□ -0.39
COL17A1-203ENST00000393211 TRIM27P14373 513 aa12.63□□□□□ -0.39
COL17A1-203ENST00000393211 EXOSC9Q06265 439 aaKnown RBP12.63□□□□□ -0.39
COL17A1-203ENST00000393211 GGT6Q6P531 493 aa12.63□□□□□ -0.39
COL17A1-203ENST00000393211 C22orf23Q9BZE7 217 aa12.63□□□□□ -0.39
COL17A1-203ENST00000393211 SLKQ9H2G2 1235 aaPredicted RBP12.63□□□□□ -0.39
COL17A1-203ENST00000393211 CHMP5Q9NZZ3 219 aa12.63□□□□□ -0.39
COL17A1-203ENST00000393211 TRIM35Q9UPQ4 493 aa12.63□□□□□ -0.39
COL17A1-203ENST00000393211 SSH1Q8WYL5 1049 aa12.62□□□□□ -0.39
COL17A1-203ENST00000393211 ANO8Q9HCE9 1232 aaPredicted RBP12.62□□□□□ -0.39
COL17A1-203ENST00000393211 POGKQ9P215 609 aa12.62□□□□□ -0.39
COL17A1-203ENST00000393211 PPIP5K1Q6PFW1 1433 aa12.62□□□□□ -0.39
COL17A1-203ENST00000393211 CABP2Q9NPB3 220 aa12.61□□□□□ -0.39
COL17A1-203ENST00000393211 ZBTB40Q9NUA8 1239 aa12.61□□□□□ -0.39
COL17A1-203ENST00000393211 PTPRMP28827 1452 aa12.61□□□□□ -0.39
COL17A1-203ENST00000393211 DIP2CQ9Y2E4 1556 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 FCHSD2O94868 740 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 MCM4P33991 863 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 SNX21Q969T3 373 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 RSPH6AQ9H0K4 717 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 ISY1Q9ULR0 285 aaKnown RBP12.6□□□□□ -0.39
COL17A1-203ENST00000393211 KIF20BQ96Q89 1820 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 RIMBP3CA6NJZ7 1639 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 RIMBP3BA6NNM3 1639 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 RIMBP3Q9UFD9 1639 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 REREQ9P2R6 1566 aa12.6□□□□□ -0.39
COL17A1-203ENST00000393211 CD163L1Q9NR16 1453 aa12.59□□□□□ -0.39
COL17A1-203ENST00000393211 DIAPH1O60610 1272 aaKnown RBP12.59□□□□□ -0.39
COL17A1-203ENST00000393211 EIF5BO60841 1220 aaKnown RBP12.59□□□□□ -0.39
COL17A1-203ENST00000393211 RBM25P49756 843 aaKnown RBP12.59□□□□□ -0.39
COL17A1-203ENST00000393211 ITPRIPQ8IWB1 547 aa12.59□□□□□ -0.39
COL17A1-203ENST00000393211 TSR2Q969E8 191 aaKnown RBP12.59□□□□□ -0.39
COL17A1-203ENST00000393211 NCOA3Q9Y6Q9 1424 aa12.59□□□□□ -0.39
COL17A1-203ENST00000393211 U2SURPO15042 1029 aaKnown RBP12.59□□□□□ -0.39
COL17A1-203ENST00000393211 FYB1O15117 783 aa12.59□□□□□ -0.39
COL17A1-203ENST00000393211 NUCB1Q02818 461 aa12.59□□□□□ -0.39
COL17A1-203ENST00000393211 HDGFL2Q7Z4V5 671 aaPredicted RBP12.59□□□□□ -0.39
COL17A1-203ENST00000393211 ARHGAP45Q92619 1136 aa12.59□□□□□ -0.39
COL17A1-203ENST00000393211 NOB1Q9ULX3 412 aaKnown RBP12.59□□□□□ -0.39
COL17A1-203ENST00000393211 TMEM131LA2VDJ0 1609 aa12.58□□□□□ -0.4
COL17A1-203ENST00000393211 FSD2A1L4K1 749 aa12.58□□□□□ -0.4
COL17A1-203ENST00000393211 RIPK4P57078 832 aa12.58□□□□□ -0.4
COL17A1-203ENST00000393211 SRPK2P78362 688 aaKnown RBP12.58□□□□□ -0.4
COL17A1-203ENST00000393211 CALD1Q05682 793 aaKnown RBP12.58□□□□□ -0.4
COL17A1-203ENST00000393211 HSCBQ8IWL3 235 aa12.58□□□□□ -0.4
COL17A1-203ENST00000393211 CIZ1Q9ULV3 898 aaPredicted RBP12.58□□□□□ -0.4
COL17A1-203ENST00000393211 DDX11L8A8MPP1 907 aa12.57□□□□□ -0.4
COL17A1-203ENST00000393211 PTMSP20962 102 aa12.57□□□□□ -0.4
COL17A1-203ENST00000393211 YTHDC2Q9H6S0 1430 aaKnown RBP12.57□□□□□ -0.4
COL17A1-203ENST00000393211 PREX1Q8TCU6 1659 aa12.57□□□□□ -0.4
COL17A1-203ENST00000393211 PIK3R4Q99570 1358 aa12.56□□□□□ -0.4
COL17A1-203ENST00000393211 GOLGA6L3A6NEY3 463 aa12.56□□□□□ -0.4
COL17A1-203ENST00000393211 MFAP1P55081 439 aaKnown RBP12.56□□□□□ -0.4
COL17A1-203ENST00000393211 IDI1Q13907 227 aa12.56□□□□□ -0.4
COL17A1-203ENST00000393211 TMEM57Q8N5G2 664 aa12.56□□□□□ -0.4
COL17A1-203ENST00000393211 GCC1Q96CN9 775 aa12.56□□□□□ -0.4
COL17A1-203ENST00000393211 GGNBP2Q9H3C7 697 aa12.56□□□□□ -0.4
COL17A1-203ENST00000393211 DLC1Q96QB1 1528 aa12.56□□□□□ -0.4
COL17A1-203ENST00000393211 BMP2KLQ5H9B9 411 aa12.55□□□□□ -0.4
COL17A1-203ENST00000393211 FAM135BQ49AJ0 1406 aa12.55□□□□□ -0.4
COL17A1-203ENST00000393211 ARHGEF40Q8TER5 1519 aa12.55□□□□□ -0.4
COL17A1-203ENST00000393211 ATP7BP35670 1465 aa12.55□□□□□ -0.4
COL17A1-203ENST00000393211 DDIT3P35638 169 aa12.55□□□□□ -0.4
COL17A1-203ENST00000393211 CHD1LQ86WJ1 897 aa12.55□□□□□ -0.4
COL17A1-203ENST00000393211 CFAP44Q96MT7 982 aa12.55□□□□□ -0.4
COL17A1-203ENST00000393211 RICTORQ6R327 1708 aa12.54□□□□□ -0.4
COL17A1-203ENST00000393211 PTCH1Q13635 1447 aa12.54□□□□□ -0.4
COL17A1-203ENST00000393211 MYO5BQ9ULV0 1848 aa12.54□□□□□ -0.4
COL17A1-203ENST00000393211 LRRC7Q96NW7 1537 aa12.54□□□□□ -0.4
COL17A1-203ENST00000393211 TRAK2O60296 914 aa12.53□□□□□ -0.4
COL17A1-203ENST00000393211 MRE11P49959 708 aa12.53□□□□□ -0.4
COL17A1-203ENST00000393211 ZNF692Q9BU19 519 aaPredicted RBP12.53□□□□□ -0.4
COL17A1-203ENST00000393211 KIF24Q5T7B8 1368 aa12.53□□□□□ -0.4
COL17A1-203ENST00000393211 ALKQ9UM73 1620 aa12.53□□□□□ -0.4
COL17A1-203ENST00000393211 SKOR2Q2VWA4 1001 aaPredicted RBP12.51□□□□□ -0.41
COL17A1-203ENST00000393211 PRAM1Q96QH2 718 aa12.51□□□□□ -0.41
COL17A1-203ENST00000393211 ZBTB7BO15156 539 aaPredicted RBP12.51□□□□□ -0.41
COL17A1-203ENST00000393211 XRCC6P12956 609 aaKnown RBP eCLIP12.51□□□□□ -0.41
COL17A1-203ENST00000393211 GNAI1P63096 354 aa12.51□□□□□ -0.41
COL17A1-203ENST00000393211 NFE2L2Q16236 605 aa12.51□□□□□ -0.41
COL17A1-203ENST00000393211 IFT57Q9NWB7 429 aa12.51□□□□□ -0.41
COL17A1-203ENST00000393211 STK26Q9P289 416 aa12.51□□□□□ -0.41
COL17A1-203ENST00000393211 LMOD3Q0VAK6 560 aa12.5□□□□□ -0.41
COL17A1-203ENST00000393211 NUTM2DQ5VT03 806 aaPredicted RBP12.5□□□□□ -0.41
COL17A1-203ENST00000393211 MRPL50Q8N5N7 158 aaKnown RBP12.5□□□□□ -0.41
COL17A1-203ENST00000393211 CDK19Q9BWU1 502 aa12.5□□□□□ -0.41
COL17A1-203ENST00000393211 MINK1Q8N4C8 1332 aaPredicted RBP12.5□□□□□ -0.41
COL17A1-203ENST00000393211 VAMP4O75379 141 aa12.49□□□□□ -0.41
COL17A1-203ENST00000393211 SAFB2Q14151 953 aaKnown RBP eCLIP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms