RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SIN3AQ96ST3 1273 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 TRIM5Q9C035 493 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 TTC5Q8N0Z6 440 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 DEF6Q9H4E7 631 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 TCERG1O14776 1098 aaKnown RBP5.51□□□□□ -1.53
SCN1A-202ENST00000375405 SHTN1A0MZ66 631 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 MACROD2A1Z1Q3 448 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 ZBTB24O43167 697 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-202ENST00000375405 ZNF76P36508 570 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 TPD52P55327 224 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-202ENST00000375405 PPP4R3AQ6IN85 833 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 DACT3Q96B18 629 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-202ENST00000375405 LIG1P18858 919 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 LMAN1P49257 510 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 SLC26A8Q96RN1 970 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 CWC15Q9P013 229 aaKnown RBP5.5□□□□□ -1.53
SCN1A-202ENST00000375405 ANKFY1Q9P2R3 1169 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 SLC9A5Q14940 896 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 CEP135Q66GS9 1140 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 OLFM4Q6UX06 510 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 DAAM2Q86T65 1068 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 FERMT2Q96AC1 680 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 ITM2BQ9Y287 266 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 DDX11L8A8MPP1 907 aa5.5□□□□□ -1.53
SCN1A-202ENST00000375405 CTNNBL1Q8WYA6 563 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-202ENST00000375405 CCDC160A6NGH7 325 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 TSHZ2Q9NRE2 1034 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 MAPK8IP2Q13387 824 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-202ENST00000375405 TSNARE1Q96NA8 513 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 STK25O00506 426 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 POTEJP0CG39 1038 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 TMC2Q8TDI7 906 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 KIF5CO60282 957 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 TNNT1P13805 278 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 CUL4BQ13620 913 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 TRIM22Q8IYM9 498 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 WHAMMQ8TF30 809 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 NAP1L3Q99457 506 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-202ENST00000375405 ABCC9O60706 1549 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 ATP2B3Q16720 1220 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 MORC1Q86VD1 984 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 PIBF1Q8WXW3 757 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 PFDN4Q9NQP4 134 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 CCDC180Q9P1Z9 1646 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 XBP1P17861 261 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 HAUS7Q99871 368 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 PDCL2Q8N4E4 241 aa5.49□□□□□ -1.53
SCN1A-202ENST00000375405 ERCC4Q92889 916 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-202ENST00000375405 ST18O60284 1047 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 SSBP05455 408 aaKnown RBP eCLIP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 XRCC6P12956 609 aaKnown RBP eCLIP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 CTNNA2P26232 953 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 ACBD5Q5T8D3 534 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 HDGFL2Q7Z4V5 671 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 TMEM259Q4ZIN3 620 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 TRMT1LQ7Z2T5 733 aaKnown RBP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 HOOK3Q86VS8 718 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 TBC1D12O60347 775 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 AAMPQ13685 434 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 LRRFIP2Q9Y608 721 aaKnown RBP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 NECTIN2Q92692 538 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 BEGAINQ9BUH8 593 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 GOPCQ9HD26 462 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 IFT57Q9NWB7 429 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 CLEC11AQ9Y240 323 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 GSTTP1A0A1W2PQM5 241 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 HSP90AA5PQ58FG0 334 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 ZSCAN31Q96LW9 406 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 CARD11Q9BXL7 1154 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 CHMP4AQ9BY43 222 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 CACYBPQ9HB71 228 aaKnown RBP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 ANO2Q9NQ90 1003 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 C9orf78Q9NZ63 289 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-202ENST00000375405 STK24Q9Y6E0 443 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 ZBTB41Q5SVQ8 909 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 CCDC150Q8NCX0 1101 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 SMC1BQ8NDV3 1235 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 MIPOL1Q8TD10 442 aa5.48□□□□□ -1.53
SCN1A-202ENST00000375405 ERLIN1O75477 346 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 RPUSD2Q8IZ73 545 aaKnown RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 UBA5Q9GZZ9 404 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 FEZ2Q9UHY8 353 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 CCDC172P0C7W6 258 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 TXLNAP40222 546 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 NUTM2BA6NNL0 878 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 NUTM2EB1AL46 878 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 EIF2S2P20042 333 aaKnown RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 IFNLR1Q8IU57 520 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 NUTM2AQ8IVF1 878 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 SMARCE1Q969G3 411 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 PLEKHD1A6NEE1 506 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 RABEP1Q15276 862 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 WASHC4Q2M389 1173 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 SASS6Q6UVJ0 657 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 EPSTI1Q96J88 318 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 IRAK4Q9NWZ3 460 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 BAZ1BQ9UIG0 1483 aaKnown RBP5.47□□□□□ -1.53
SCN1A-202ENST00000375405 ADRA2BP18089 450 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 KMT5BQ4FZB7 885 aa5.47□□□□□ -1.53
SCN1A-202ENST00000375405 SMC2O95347 1197 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms