RNA–Protein interactions for RNA: ENST00000374399.8

NIPAL3-204, Transcript of NIPA like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPAL3, Length 1,711 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-204ENST00000374399 XIRP1Q702N8 1843 aaKnown RBP21.08■□□□□ 0.96
NIPAL3-204ENST00000374399 ZBED9Q6R2W3 1325 aa21.07■□□□□ 0.96
NIPAL3-204ENST00000374399 TMEM94Q12767 1356 aa21.06■□□□□ 0.96
NIPAL3-204ENST00000374399 COL3A1P02461 1466 aaPredicted RBP21.05■□□□□ 0.96
NIPAL3-204ENST00000374399 MAP2P11137 1827 aaKnown RBP21.04■□□□□ 0.96
NIPAL3-204ENST00000374399 SCAF1Q9H7N4 1312 aaKnown RBP21.04■□□□□ 0.96
NIPAL3-204ENST00000374399 OVOS2A0A0J9YW53 1432 aa21.04■□□□□ 0.96
NIPAL3-204ENST00000374399 OVOS2Q6IE36 1432 aa21.04■□□□□ 0.96
NIPAL3-204ENST00000374399 NCOA3Q9Y6Q9 1424 aa21.04■□□□□ 0.96
NIPAL3-204ENST00000374399 FBLN1P23142 703 aa21.04■□□□□ 0.96
NIPAL3-204ENST00000374399 SENP3-EIF4A1A0A087X0R7 540 aa21.03■□□□□ 0.96
NIPAL3-204ENST00000374399 C14orf37Q86TY3 774 aa21.02■□□□□ 0.96
NIPAL3-204ENST00000374399 NGDNQ8NEJ9 315 aaKnown RBP21.02■□□□□ 0.96
NIPAL3-204ENST00000374399 C19orf44Q9H6X5 657 aa21.02■□□□□ 0.96
NIPAL3-204ENST00000374399 PIK3C2AO00443 1686 aa21.02■□□□□ 0.96
NIPAL3-204ENST00000374399 PNPLA6Q8IY17 1366 aa21.01■□□□□ 0.95
NIPAL3-204ENST00000374399 PHF8Q9UPP1 1060 aa21.01■□□□□ 0.95
NIPAL3-204ENST00000374399 MARF1Q9Y4F3 1742 aaKnown RBP21.01■□□□□ 0.95
NIPAL3-204ENST00000374399 POLKQ9UBT6 870 aa21■□□□□ 0.95
NIPAL3-204ENST00000374399 AATKQ6ZMQ8 1374 aa20.99■□□□□ 0.95
NIPAL3-204ENST00000374399 WDR43Q15061 677 aaKnown RBP eCLIP20.99■□□□□ 0.95
NIPAL3-204ENST00000374399 SMG6Q86US8 1419 aaKnown RBP20.99■□□□□ 0.95
NIPAL3-204ENST00000374399 TTC21AQ8NDW8 1320 aa20.99■□□□□ 0.95
NIPAL3-204ENST00000374399 ZNF335Q9H4Z2 1342 aaPredicted RBP20.99■□□□□ 0.95
NIPAL3-204ENST00000374399 LRRC7Q96NW7 1537 aa20.99■□□□□ 0.95
NIPAL3-204ENST00000374399 DCCP43146 1447 aa20.98■□□□□ 0.95
NIPAL3-204ENST00000374399 COG3Q96JB2 828 aa20.98■□□□□ 0.95
NIPAL3-204ENST00000374399 C1orf167Q5SNV9 1468 aa20.98■□□□□ 0.95
NIPAL3-204ENST00000374399 USP54Q70EL1 1684 aa20.98■□□□□ 0.95
NIPAL3-204ENST00000374399 MST1RQ04912 1400 aa20.98■□□□□ 0.95
NIPAL3-204ENST00000374399 ORAI2Q96SN7 254 aa20.98■□□□□ 0.95
NIPAL3-204ENST00000374399 USP31Q70CQ4 1352 aa20.97■□□□□ 0.95
NIPAL3-204ENST00000374399 ESCO1Q5FWF5 840 aa20.97■□□□□ 0.95
NIPAL3-204ENST00000374399 CFAP53Q96M91 514 aa20.95■□□□□ 0.94
NIPAL3-204ENST00000374399 EMILIN1Q9Y6C2 1016 aa20.94■□□□□ 0.94
NIPAL3-204ENST00000374399 KIF1AQ12756 1690 aa20.92■□□□□ 0.94
NIPAL3-204ENST00000374399 PEAK1Q9H792 1746 aa20.92■□□□□ 0.94
NIPAL3-204ENST00000374399 CDK12Q9NYV4 1490 aaPredicted RBP20.92■□□□□ 0.94
NIPAL3-204ENST00000374399 CCDC146Q8IYE0 955 aa20.92■□□□□ 0.94
NIPAL3-204ENST00000374399 TRPM3Q9HCF6 1732 aaPredicted RBP20.91■□□□□ 0.94
NIPAL3-204ENST00000374399 RRS1Q15050 365 aaKnown RBP20.91■□□□□ 0.94
NIPAL3-204ENST00000374399 ATF3P18847 181 aa20.9■□□□□ 0.94
NIPAL3-204ENST00000374399 SALL2Q9Y467 1007 aaPredicted RBP20.89■□□□□ 0.93
NIPAL3-204ENST00000374399 MSH6P52701 1360 aa20.88■□□□□ 0.93
NIPAL3-204ENST00000374399 FOXO3O43524 673 aa20.88■□□□□ 0.93
NIPAL3-204ENST00000374399 GTF3C3Q9Y5Q9 886 aa20.87■□□□□ 0.93
NIPAL3-204ENST00000374399 DMRT2Q9Y5R5 561 aa20.87■□□□□ 0.93
NIPAL3-204ENST00000374399 IQSEC2Q5JU85 1478 aa20.87■□□□□ 0.93
NIPAL3-204ENST00000374399 DIAPH1O60610 1272 aaKnown RBP20.87■□□□□ 0.93
NIPAL3-204ENST00000374399 PSME1Q06323 249 aa20.87■□□□□ 0.93
NIPAL3-204ENST00000374399 CADPS2Q86UW7 1296 aa20.87■□□□□ 0.93
NIPAL3-204ENST00000374399 ZNF521Q96K83 1311 aa20.86■□□□□ 0.93
NIPAL3-204ENST00000374399 PPM1GO15355 546 aaPredicted RBP20.86■□□□□ 0.93
NIPAL3-204ENST00000374399 APAF1O14727 1248 aa20.85■□□□□ 0.93
NIPAL3-204ENST00000374399 NLRP6P59044 892 aa20.85■□□□□ 0.93
NIPAL3-204ENST00000374399 ABTB2Q8N961 1025 aa20.85■□□□□ 0.93
NIPAL3-204ENST00000374399 PAK3O75914 559 aaPredicted RBP20.84■□□□□ 0.93
NIPAL3-204ENST00000374399 IL13P35225 146 aa20.84■□□□□ 0.93
NIPAL3-204ENST00000374399 XPCQ01831 940 aaPredicted RBP20.84■□□□□ 0.93
NIPAL3-204ENST00000374399 NUTM2GQ5VZR2 741 aa20.84■□□□□ 0.93
NIPAL3-204ENST00000374399 U2AF1L5P0DN76 240 aaPredicted RBP20.84■□□□□ 0.93
NIPAL3-204ENST00000374399 U2AF1Q01081 240 aaKnown RBP eCLIP20.84■□□□□ 0.93
NIPAL3-204ENST00000374399 RUNDC1Q96C34 613 aa20.83■□□□□ 0.92
NIPAL3-204ENST00000374399 PLEKHF1Q96S99 279 aa20.83■□□□□ 0.92
NIPAL3-204ENST00000374399 MAP3K19Q56UN5 1328 aa20.83■□□□□ 0.92
NIPAL3-204ENST00000374399 ALS2Q96Q42 1657 aa20.82■□□□□ 0.92
NIPAL3-204ENST00000374399 NUDCQ9Y266 331 aa20.82■□□□□ 0.92
NIPAL3-204ENST00000374399 U2SURPO15042 1029 aaKnown RBP20.81■□□□□ 0.92
NIPAL3-204ENST00000374399 NFAT5O94916 1531 aa20.81■□□□□ 0.92
NIPAL3-204ENST00000374399 SOX12O15370 315 aa20.81■□□□□ 0.92
NIPAL3-204ENST00000374399 KRT28Q7Z3Y7 464 aa20.81■□□□□ 0.92
NIPAL3-204ENST00000374399 CDCA7LQ96GN5 454 aa20.81■□□□□ 0.92
NIPAL3-204ENST00000374399 DDX17Q92841 729 aaKnown RBP20.8■□□□□ 0.92
NIPAL3-204ENST00000374399 RGPD1P0DJD0 1748 aa20.79■□□□□ 0.92
NIPAL3-204ENST00000374399 PDE3BQ13370 1112 aa20.79■□□□□ 0.92
NIPAL3-204ENST00000374399 LTBP4Q8N2S1 1624 aa20.78■□□□□ 0.92
NIPAL3-204ENST00000374399 TCP11L2Q8N4U5 519 aa20.78■□□□□ 0.92
NIPAL3-204ENST00000374399 SLIT3O75094 1523 aa20.78■□□□□ 0.92
NIPAL3-204ENST00000374399 SBNO1A3KN83 1393 aa20.78■□□□□ 0.92
NIPAL3-204ENST00000374399 PXDNQ92626 1479 aa20.78■□□□□ 0.92
NIPAL3-204ENST00000374399 HSP90AB2PQ58FF8 381 aa20.78■□□□□ 0.92
NIPAL3-204ENST00000374399 PHF23Q9BUL5 403 aaPredicted RBP20.78■□□□□ 0.92
NIPAL3-204ENST00000374399 LTN1O94822 1766 aa20.77■□□□□ 0.92
NIPAL3-204ENST00000374399 EIF4A2Q14240 407 aaKnown RBP20.77■□□□□ 0.92
NIPAL3-204ENST00000374399 BRINP3Q76B58 766 aa20.77■□□□□ 0.92
NIPAL3-204ENST00000374399 RSPH6AQ9H0K4 717 aa20.77■□□□□ 0.92
NIPAL3-204ENST00000374399 FLT4P35916 1363 aa20.75■□□□□ 0.91
NIPAL3-204ENST00000374399 FCHSD2O94868 740 aa20.75■□□□□ 0.91
NIPAL3-204ENST00000374399 SLAIN2Q9P270 581 aa20.75■□□□□ 0.91
NIPAL3-204ENST00000374399 USP19O94966 1318 aa20.75■□□□□ 0.91
NIPAL3-204ENST00000374399 NGEFQ8N5V2 710 aa20.74■□□□□ 0.91
NIPAL3-204ENST00000374399 RRP7AQ9Y3A4 280 aaKnown RBP20.74■□□□□ 0.91
NIPAL3-204ENST00000374399 MED1Q15648 1581 aaPredicted RBP20.74■□□□□ 0.91
NIPAL3-204ENST00000374399 PHRF1Q9P1Y6 1649 aaKnown RBP20.74■□□□□ 0.91
NIPAL3-204ENST00000374399 KIF24Q5T7B8 1368 aa20.73■□□□□ 0.91
NIPAL3-204ENST00000374399 NPHP3Q7Z494 1330 aa20.73■□□□□ 0.91
NIPAL3-204ENST00000374399 SPINK5Q9NQ38 1064 aaPredicted RBP20.73■□□□□ 0.91
NIPAL3-204ENST00000374399 SUPT16HQ9Y5B9 1047 aaKnown RBP20.73■□□□□ 0.91
NIPAL3-204ENST00000374399 NCBP3Q53F19 620 aaKnown RBP20.72■□□□□ 0.91
NIPAL3-204ENST00000374399 WWC1Q8IX03 1113 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms