RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 ABCA10Q8WWZ4 1543 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 GOLGA6L3A6NEY3 463 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 XPCQ01831 940 aaPredicted RBP11.89□□□□□ -0.51
COL4A6-202ENST00000372216 CT47A1Q5JQC4 288 aaPredicted RBP11.89□□□□□ -0.51
COL4A6-202ENST00000372216 WASHC2AQ641Q2 1341 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 WASHC4Q2M389 1173 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 RNF20Q5VTR2 975 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 SLC12A5Q9H2X9 1139 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 CPLX1O14810 134 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 CHMP4BP1P59074 171 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 KIF14Q15058 1648 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 RPGRIP1LQ68CZ1 1315 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 PDE4AP27815 886 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 ODF2Q5BJF6 829 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 PANK1Q8TE04 598 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 R3HCC1Q9Y3T6 440 aaKnown RBP11.88□□□□□ -0.51
COL4A6-202ENST00000372216 PPM1FP49593 454 aaPredicted RBP11.88□□□□□ -0.51
COL4A6-202ENST00000372216 PAXIP1Q6ZW49 1069 aaPredicted RBP11.88□□□□□ -0.51
COL4A6-202ENST00000372216 SPG7Q9UQ90 795 aa11.88□□□□□ -0.51
COL4A6-202ENST00000372216 BRD4O60885 1362 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-202ENST00000372216 MAGI1Q96QZ7 1491 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-202ENST00000372216 TCP11L2Q8N4U5 519 aa11.87□□□□□ -0.51
COL4A6-202ENST00000372216 MYCNP04198 464 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-202ENST00000372216 SULT6B1Q6IMI4 303 aa11.87□□□□□ -0.51
COL4A6-202ENST00000372216 ATP6V1DQ9Y5K8 247 aa11.87□□□□□ -0.51
COL4A6-202ENST00000372216 RBM5P52756 815 aaKnown RBP eCLIP11.86□□□□□ -0.51
COL4A6-202ENST00000372216 GOLGA6L19H0YKK7 550 aa11.86□□□□□ -0.51
COL4A6-202ENST00000372216 BICRAQ9NZM4 1560 aa11.86□□□□□ -0.51
COL4A6-202ENST00000372216 INTS3Q68E01 1043 aaKnown RBP11.86□□□□□ -0.51
COL4A6-202ENST00000372216 WDR70Q9NW82 654 aa11.86□□□□□ -0.51
COL4A6-202ENST00000372216 LNPKQ9C0E8 428 aa11.86□□□□□ -0.51
COL4A6-202ENST00000372216 PCF11O94913 1555 aaKnown RBP11.85□□□□□ -0.51
COL4A6-202ENST00000372216 CCDC141Q6ZP82 1450 aa11.85□□□□□ -0.51
COL4A6-202ENST00000372216 DDX11L8A8MPP1 907 aa11.85□□□□□ -0.51
COL4A6-202ENST00000372216 GRIN2AQ12879 1464 aa11.85□□□□□ -0.51
COL4A6-202ENST00000372216 ZNF530Q6P9A1 599 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-202ENST00000372216 TTLL5Q6EMB2 1281 aa11.85□□□□□ -0.51
COL4A6-202ENST00000372216 ADGRL1O94910 1474 aa11.85□□□□□ -0.51
COL4A6-202ENST00000372216 BECN2A8MW95 431 aa11.84□□□□□ -0.51
COL4A6-202ENST00000372216 CAMSAP2Q08AD1 1489 aa11.84□□□□□ -0.51
COL4A6-202ENST00000372216 NINLQ9Y2I6 1382 aa11.84□□□□□ -0.51
COL4A6-202ENST00000372216 PRDM11Q9NQV5 511 aa11.84□□□□□ -0.51
COL4A6-202ENST00000372216 PLB1Q6P1J6 1458 aa11.84□□□□□ -0.51
COL4A6-202ENST00000372216 TWISTNBQ3B726 338 aaPredicted RBP11.84□□□□□ -0.51
COL4A6-202ENST00000372216 TPM1P09493 284 aa11.84□□□□□ -0.51
COL4A6-202ENST00000372216 RRS1Q15050 365 aaKnown RBP11.83□□□□□ -0.51
COL4A6-202ENST00000372216 HSP90AB2PQ58FF8 381 aa11.83□□□□□ -0.51
COL4A6-202ENST00000372216 EPS15P42566 896 aa11.83□□□□□ -0.52
COL4A6-202ENST00000372216 EXOSC9Q06265 439 aaKnown RBP11.83□□□□□ -0.52
COL4A6-202ENST00000372216 DNAJC2Q99543 621 aaKnown RBP11.83□□□□□ -0.52
COL4A6-202ENST00000372216 TSHZ2Q9NRE2 1034 aa11.83□□□□□ -0.52
COL4A6-202ENST00000372216 ANKRD30BQ9BXX2 1392 aa11.83□□□□□ -0.52
COL4A6-202ENST00000372216 CNNM1Q9NRU3 951 aa11.83□□□□□ -0.52
COL4A6-202ENST00000372216 WWC2Q6AWC2 1192 aa11.82□□□□□ -0.52
COL4A6-202ENST00000372216 RALYLQ86SE5 291 aaKnown RBP11.82□□□□□ -0.52
COL4A6-202ENST00000372216 GNAI3P08754 354 aa11.82□□□□□ -0.52
COL4A6-202ENST00000372216 NBPF8Q3BBV2 869 aa11.82□□□□□ -0.52
COL4A6-202ENST00000372216 TBC1D2BQ9UPU7 963 aa11.82□□□□□ -0.52
COL4A6-202ENST00000372216 FSD1Q9BTV5 496 aa11.82□□□□□ -0.52
COL4A6-202ENST00000372216 MYL6BP14649 208 aa11.82□□□□□ -0.52
COL4A6-202ENST00000372216 RRP12Q5JTH9 1297 aaKnown RBP11.82□□□□□ -0.52
COL4A6-202ENST00000372216 CNTROBQ8N137 903 aa11.82□□□□□ -0.52
COL4A6-202ENST00000372216 PNISRQ8TF01 805 aaKnown RBP11.82□□□□□ -0.52
COL4A6-202ENST00000372216 TTC39AQ5SRH9 613 aa11.81□□□□□ -0.52
COL4A6-202ENST00000372216 ATAD2Q6PL18 1390 aa11.81□□□□□ -0.52
COL4A6-202ENST00000372216 SURF6O75683 361 aaKnown RBP11.81□□□□□ -0.52
COL4A6-202ENST00000372216 CCDC47Q96A33 483 aaKnown RBP11.81□□□□□ -0.52
COL4A6-202ENST00000372216 NUDT16Q96DE0 195 aaKnown RBP11.81□□□□□ -0.52
COL4A6-202ENST00000372216 HDGFL1Q5TGJ6 251 aa11.81□□□□□ -0.52
COL4A6-202ENST00000372216 ZC3H6P61129 1189 aaKnown RBP11.81□□□□□ -0.52
COL4A6-202ENST00000372216 DHX37Q8IY37 1157 aaKnown RBP11.81□□□□□ -0.52
COL4A6-202ENST00000372216 TSR2Q969E8 191 aaKnown RBP11.81□□□□□ -0.52
COL4A6-202ENST00000372216 SPINK5Q9NQ38 1064 aaPredicted RBP11.81□□□□□ -0.52
COL4A6-202ENST00000372216 DDX49Q9Y6V7 483 aaKnown RBP11.8□□□□□ -0.52
COL4A6-202ENST00000372216 SLC4A2P04920 1241 aa11.8□□□□□ -0.52
COL4A6-202ENST00000372216 BICDL1Q6ZP65 573 aa11.8□□□□□ -0.52
COL4A6-202ENST00000372216 NOB1Q9ULX3 412 aaKnown RBP11.8□□□□□ -0.52
COL4A6-202ENST00000372216 C1orf115Q9H7X2 142 aa11.8□□□□□ -0.52
COL4A6-202ENST00000372216 PTPN23Q9H3S7 1636 aa11.8□□□□□ -0.52
COL4A6-202ENST00000372216 BICD2Q8TD16 824 aa11.8□□□□□ -0.52
COL4A6-202ENST00000372216 ATP2B1P20020 1258 aa11.8□□□□□ -0.52
COL4A6-202ENST00000372216 SMC3Q9UQE7 1217 aa11.79□□□□□ -0.52
COL4A6-202ENST00000372216 WAPLQ7Z5K2 1190 aa11.79□□□□□ -0.52
COL4A6-202ENST00000372216 CLASRPQ8N2M8 674 aaKnown RBP11.79□□□□□ -0.52
COL4A6-202ENST00000372216 BTBD11A6QL63 1104 aa11.79□□□□□ -0.52
COL4A6-202ENST00000372216 VPS37CA5D8V6 355 aaPredicted RBP11.79□□□□□ -0.52
COL4A6-202ENST00000372216 CDCA7LQ96GN5 454 aa11.79□□□□□ -0.52
COL4A6-202ENST00000372216 CDC45O75419 566 aa11.79□□□□□ -0.52
COL4A6-202ENST00000372216 GNAI2P04899 355 aa11.78□□□□□ -0.52
COL4A6-202ENST00000372216 SAFBQ15424 915 aaKnown RBP eCLIP11.78□□□□□ -0.52
COL4A6-202ENST00000372216 SETQ01105 290 aaPredicted RBP11.78□□□□□ -0.52
COL4A6-202ENST00000372216 CCDC70Q6NSX1 233 aa11.78□□□□□ -0.52
COL4A6-202ENST00000372216 URB2Q14146 1524 aaKnown RBP11.78□□□□□ -0.52
COL4A6-202ENST00000372216 AAMPQ13685 434 aa11.78□□□□□ -0.52
COL4A6-202ENST00000372216 ERC1Q8IUD2 1116 aa11.78□□□□□ -0.52
COL4A6-202ENST00000372216 GNL3LQ9NVN8 582 aaKnown RBP11.78□□□□□ -0.52
COL4A6-202ENST00000372216 FAM135AQ9P2D6 1515 aa11.78□□□□□ -0.52
COL4A6-202ENST00000372216 CCDC158Q5M9N0 1113 aa11.77□□□□□ -0.52
COL4A6-202ENST00000372216 NSD3Q9BZ95 1437 aa11.77□□□□□ -0.53
COL4A6-202ENST00000372216 CEBPAP49715 358 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms