RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 H0YHG0 523 aa14.15□□□□□ -0.14
PTPN1-201ENST00000371621 GTF3C6Q969F1 213 aa14.14□□□□□ -0.15
PTPN1-201ENST00000371621 TSPYL1Q9H0U9 437 aa14.14□□□□□ -0.15
PTPN1-201ENST00000371621 SMC3Q9UQE7 1217 aa14.14□□□□□ -0.15
PTPN1-201ENST00000371621 ATP2B3Q16720 1220 aa14.14□□□□□ -0.15
PTPN1-201ENST00000371621 UPF3BQ9BZI7 483 aaKnown RBP14.14□□□□□ -0.15
PTPN1-201ENST00000371621 PPP1R9BQ96SB3 815 aa14.14□□□□□ -0.15
PTPN1-201ENST00000371621 CWC22Q9HCG8 908 aaKnown RBP14.14□□□□□ -0.15
PTPN1-201ENST00000371621 OGFRQ9NZT2 677 aa14.14□□□□□ -0.15
PTPN1-201ENST00000371621 NAIPQ13075 1403 aa14.14□□□□□ -0.15
PTPN1-201ENST00000371621 TPM3P06753 285 aa14.13□□□□□ -0.15
PTPN1-201ENST00000371621 NOB1Q9ULX3 412 aaKnown RBP14.13□□□□□ -0.15
PTPN1-201ENST00000371621 MYOM3Q5VTT5 1437 aa14.13□□□□□ -0.15
PTPN1-201ENST00000371621 FOSBP53539 338 aa14.13□□□□□ -0.15
PTPN1-201ENST00000371621 CREBRFQ8IUR6 639 aa14.13□□□□□ -0.15
PTPN1-201ENST00000371621 LARP6Q9BRS8 491 aaKnown RBP14.13□□□□□ -0.15
PTPN1-201ENST00000371621 ZNF500O60304 480 aaPredicted RBP14.12□□□□□ -0.15
PTPN1-201ENST00000371621 HAP1P54257 671 aaPredicted RBP14.12□□□□□ -0.15
PTPN1-201ENST00000371621 PTPN14Q15678 1187 aa14.12□□□□□ -0.15
PTPN1-201ENST00000371621 HSP90B2PQ58FF3 399 aa14.12□□□□□ -0.15
PTPN1-201ENST00000371621 FAM184AQ8NB25 1140 aa14.12□□□□□ -0.15
PTPN1-201ENST00000371621 AK7Q96M32 723 aa14.12□□□□□ -0.15
PTPN1-201ENST00000371621 LRPPRCP42704 1394 aaKnown RBP14.12□□□□□ -0.15
PTPN1-201ENST00000371621 ZGPATQ8N5A5 531 aaKnown RBP14.12□□□□□ -0.15
PTPN1-201ENST00000371621 RSPH14Q9UHP6 348 aa14.12□□□□□ -0.15
PTPN1-201ENST00000371621 ZSCAN20P17040 1043 aaPredicted RBP14.12□□□□□ -0.15
PTPN1-201ENST00000371621 TPM4P67936 248 aa14.12□□□□□ -0.15
PTPN1-201ENST00000371621 GIMAP6Q6P9H5 292 aa14.12□□□□□ -0.15
PTPN1-201ENST00000371621 SPINK5Q9NQ38 1064 aaPredicted RBP14.12□□□□□ -0.15
PTPN1-201ENST00000371621 CCDC192P0DO97 292 aa14.11□□□□□ -0.15
PTPN1-201ENST00000371621 RARSP54136 660 aaKnown RBP14.11□□□□□ -0.15
PTPN1-201ENST00000371621 TIAM1Q13009 1591 aa14.11□□□□□ -0.15
PTPN1-201ENST00000371621 LMAN1P49257 510 aa14.11□□□□□ -0.15
PTPN1-201ENST00000371621 UBXN4Q92575 508 aa14.11□□□□□ -0.15
PTPN1-201ENST00000371621 RLBP1P12271 317 aa14.11□□□□□ -0.15
PTPN1-201ENST00000371621 WWC1Q8IX03 1113 aa14.11□□□□□ -0.15
PTPN1-201ENST00000371621 ANKRD30AQ9BXX3 1397 aa14.11□□□□□ -0.15
PTPN1-201ENST00000371621 CEBPZQ03701 1054 aaKnown RBP14.1□□□□□ -0.15
PTPN1-201ENST00000371621 TMCO3Q6UWJ1 677 aa14.1□□□□□ -0.15
PTPN1-201ENST00000371621 NOC3LQ8WTT2 800 aaKnown RBP14.1□□□□□ -0.15
PTPN1-201ENST00000371621 CHMP4CQ96CF2 233 aa14.1□□□□□ -0.15
PTPN1-201ENST00000371621 FEZ1Q99689 392 aa14.1□□□□□ -0.15
PTPN1-201ENST00000371621 TBC1D9Q6ZT07 1266 aa14.1□□□□□ -0.15
PTPN1-201ENST00000371621 CKAP2LQ8IYA6 745 aa14.1□□□□□ -0.15
PTPN1-201ENST00000371621 RUNDC1Q96C34 613 aa14.1□□□□□ -0.15
PTPN1-201ENST00000371621 CCDC186Q7Z3E2 898 aa14.09□□□□□ -0.15
PTPN1-201ENST00000371621 SMC5Q8IY18 1101 aa14.09□□□□□ -0.15
PTPN1-201ENST00000371621 TMEM57Q8N5G2 664 aa14.09□□□□□ -0.15
PTPN1-201ENST00000371621 SOX12O15370 315 aa14.09□□□□□ -0.15
PTPN1-201ENST00000371621 HNRNPMP52272 730 aaKnown RBP eCLIP14.09□□□□□ -0.159e-8■■■■□ 25.7
PTPN1-201ENST00000371621 FERMT3Q86UX7 667 aa14.08□□□□□ -0.15
PTPN1-201ENST00000371621 PCF11O94913 1555 aaKnown RBP14.08□□□□□ -0.15
PTPN1-201ENST00000371621 LAMC3Q9Y6N6 1575 aa14.08□□□□□ -0.16
PTPN1-201ENST00000371621 DRC1Q96MC2 740 aa14.07□□□□□ -0.16
PTPN1-201ENST00000371621 RASSF4Q9H2L5 321 aa14.07□□□□□ -0.16
PTPN1-201ENST00000371621 CCDC191Q8NCU4 936 aa14.07□□□□□ -0.16
PTPN1-201ENST00000371621 SF3A1Q15459 793 aaKnown RBP14.07□□□□□ -0.16
PTPN1-201ENST00000371621 ATF7IPQ6VMQ6 1270 aa14.07□□□□□ -0.16
PTPN1-201ENST00000371621 NCOA2Q15596 1464 aa14.07□□□□□ -0.16
PTPN1-201ENST00000371621 H3BQV1 296 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 PKP1Q13835 747 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 IFFO2Q5TF58 517 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 PIBF1Q8WXW3 757 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 TMEM63CQ9P1W3 806 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 STAG3Q9UJ98 1225 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 CASKIN1Q8WXD9 1431 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 DTNBO60941 627 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 SMC2O95347 1197 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 PTGS1P23219 599 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 KIF18AQ8NI77 898 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 TNMDQ9H2S6 317 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 HDAC5Q9UQL6 1122 aa14.06□□□□□ -0.16
PTPN1-201ENST00000371621 USP19O94966 1318 aa14.05□□□□□ -0.16
PTPN1-201ENST00000371621 RDXP35241 583 aaKnown RBP14.05□□□□□ -0.16
PTPN1-201ENST00000371621 BMS1Q14692 1282 aaKnown RBP14.05□□□□□ -0.16
PTPN1-201ENST00000371621 CEP135Q66GS9 1140 aa14.05□□□□□ -0.16
PTPN1-201ENST00000371621 SRRTQ9BXP5 876 aaKnown RBP14.05□□□□□ -0.16
PTPN1-201ENST00000371621 MNAT1P51948 309 aa14.05□□□□□ -0.16
PTPN1-201ENST00000371621 LMOD3Q0VAK6 560 aa14.05□□□□□ -0.16
PTPN1-201ENST00000371621 CCDC144AA2RUR9 1427 aa14.04□□□□□ -0.16
PTPN1-201ENST00000371621 HMMRO75330 724 aa14.04□□□□□ -0.16
PTPN1-201ENST00000371621 CENPHQ9H3R5 247 aa14.04□□□□□ -0.16
PTPN1-201ENST00000371621 MTHFSP49914 203 aa14.04□□□□□ -0.16
PTPN1-201ENST00000371621 CCDC102AQ96A19 550 aa14.04□□□□□ -0.16
PTPN1-201ENST00000371621 WDR33Q9C0J8 1336 aaKnown RBP14.04□□□□□ -0.16
PTPN1-201ENST00000371621 URI1O94763 535 aaPredicted RBP14.04□□□□□ -0.16
PTPN1-201ENST00000371621 CCDC183Q5T5S1 534 aa14.04□□□□□ -0.16
PTPN1-201ENST00000371621 ZNF445P59923 1031 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 IRX5P78411 483 aaPredicted RBP14.03□□□□□ -0.16
PTPN1-201ENST00000371621 KRBA2Q6ZNG9 492 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 CLIP2Q9UDT6 1046 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 PRDM2Q13029 1718 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 PDILTQ8N807 584 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 PLEKHH1Q9ULM0 1364 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 ZSWIM4Q9H7M6 989 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 STK26Q9P289 416 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 TRAK1Q9UPV9 953 aa14.03□□□□□ -0.16
PTPN1-201ENST00000371621 LRRFIP2Q9Y608 721 aaKnown RBP14.03□□□□□ -0.16
PTPN1-201ENST00000371621 GABPB1Q06547 395 aaPredicted RBP14.02□□□□□ -0.16
PTPN1-201ENST00000371621 SYTL4Q96C24 671 aaPredicted RBP14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms