RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 UTP3Q9NQZ2 479 aaKnown RBP eCLIP26.55■■□□□ 1.842e-6■■■■■ 72.4
TM9SF3-201ENST00000371142 NOB1Q9ULX3 412 aaKnown RBP26.54■■□□□ 1.84
TM9SF3-201ENST00000371142 GPRASP1Q5JY77 1395 aa26.54■■□□□ 1.84
TM9SF3-201ENST00000371142 ARHGAP5Q13017 1502 aa26.53■■□□□ 1.84
TM9SF3-201ENST00000371142 SMC2O95347 1197 aa26.53■■□□□ 1.84
TM9SF3-201ENST00000371142 PLEKHO1Q53GL0 409 aaPredicted RBP26.53■■□□□ 1.84
TM9SF3-201ENST00000371142 TRIM5Q9C035 493 aa26.53■■□□□ 1.84
TM9SF3-201ENST00000371142 CEBPZQ03701 1054 aaKnown RBP26.52■■□□□ 1.84
TM9SF3-201ENST00000371142 HSP90AB2PQ58FF8 381 aa26.52■■□□□ 1.84
TM9SF3-201ENST00000371142 TSR2Q969E8 191 aaKnown RBP26.52■■□□□ 1.84
TM9SF3-201ENST00000371142 ACBD3Q9H3P7 528 aa26.52■■□□□ 1.84
TM9SF3-201ENST00000371142 MRE11P49959 708 aa26.52■■□□□ 1.84
TM9SF3-201ENST00000371142 TRAK2O60296 914 aa26.52■■□□□ 1.84
TM9SF3-201ENST00000371142 FMNL2Q96PY5 1086 aa26.52■■□□□ 1.84
TM9SF3-201ENST00000371142 PRPF40AO75400 957 aaKnown RBP26.51■■□□□ 1.83
TM9SF3-201ENST00000371142 CDR1P51861 262 aa26.51■■□□□ 1.83
TM9SF3-201ENST00000371142 TTC39AQ5SRH9 613 aa26.51■■□□□ 1.83
TM9SF3-201ENST00000371142 STRN4Q9NRL3 753 aa26.5■■□□□ 1.83
TM9SF3-201ENST00000371142 PRAM1Q96QH2 718 aa26.5■■□□□ 1.83
TM9SF3-201ENST00000371142 KINO60870 393 aaKnown RBP26.5■■□□□ 1.83
TM9SF3-201ENST00000371142 GNAI2P04899 355 aa26.5■■□□□ 1.83
TM9SF3-201ENST00000371142 HSP90B2PQ58FF3 399 aa26.49■■□□□ 1.83
TM9SF3-201ENST00000371142 STK11IPQ8N1F8 1099 aa26.49■■□□□ 1.83
TM9SF3-201ENST00000371142 KRI1Q8N9T8 703 aaKnown RBP26.49■■□□□ 1.83
TM9SF3-201ENST00000371142 CNNM1Q9NRU3 951 aa26.49■■□□□ 1.83
TM9SF3-201ENST00000371142 RRBP1Q9P2E9 1410 aaKnown RBP26.49■■□□□ 1.83
TM9SF3-201ENST00000371142 LRRC9Q6ZRR7 1453 aa26.49■■□□□ 1.83
TM9SF3-201ENST00000371142 AFAP1Q8N556 730 aa26.49■■□□□ 1.83
TM9SF3-201ENST00000371142 FYCO1Q9BQS8 1478 aa26.48■■□□□ 1.83
TM9SF3-201ENST00000371142 BRPF1P55201 1214 aaPredicted RBP26.48■■□□□ 1.83
TM9SF3-201ENST00000371142 FIBPO43427 364 aa26.48■■□□□ 1.83
TM9SF3-201ENST00000371142 NCOA2Q15596 1464 aa26.47■■□□□ 1.83
TM9SF3-201ENST00000371142 SLC4A2P04920 1241 aa26.47■■□□□ 1.83
TM9SF3-201ENST00000371142 HIP1O00291 1037 aa26.47■■□□□ 1.83
TM9SF3-201ENST00000371142 TSPY26PQ9H489 355 aa26.47■■□□□ 1.83
TM9SF3-201ENST00000371142 MAP4K4O95819 1239 aaPredicted RBP26.47■■□□□ 1.83
TM9SF3-201ENST00000371142 CDK5RAP3Q96JB5 506 aa26.47■■□□□ 1.83
TM9SF3-201ENST00000371142 LETM1O95202 739 aaPredicted RBP26.47■■□□□ 1.83
TM9SF3-201ENST00000371142 SIL1Q9H173 461 aa26.46■■□□□ 1.83
TM9SF3-201ENST00000371142 BCAR3O75815 825 aa26.46■■□□□ 1.83
TM9SF3-201ENST00000371142 TXNDC2Q86VQ3 553 aa26.46■■□□□ 1.83
TM9SF3-201ENST00000371142 STK3Q13188 491 aa26.46■■□□□ 1.83
TM9SF3-201ENST00000371142 PHF23Q9BUL5 403 aaPredicted RBP26.46■■□□□ 1.83
TM9SF3-201ENST00000371142 ERC1Q8IUD2 1116 aa26.45■■□□□ 1.83
TM9SF3-201ENST00000371142 SMG6Q86US8 1419 aaKnown RBP26.45■■□□□ 1.82
TM9SF3-201ENST00000371142 CCDC173Q0VFZ6 552 aa26.45■■□□□ 1.82
TM9SF3-201ENST00000371142 CCDC158Q5M9N0 1113 aa26.45■■□□□ 1.82
TM9SF3-201ENST00000371142 SKIDA1Q1XH10 827 aa26.45■■□□□ 1.82
TM9SF3-201ENST00000371142 SLC3A2P08195 630 aaKnown RBP26.44■■□□□ 1.82
TM9SF3-201ENST00000371142 GCC1Q96CN9 775 aa26.44■■□□□ 1.82
TM9SF3-201ENST00000371142 TMEM132AQ24JP5 1023 aa26.44■■□□□ 1.82
TM9SF3-201ENST00000371142 NBPF1Q3BBV0 1214 aa26.44■■□□□ 1.82
TM9SF3-201ENST00000371142 AQRO60306 1485 aaKnown RBP eCLIP26.43■■□□□ 1.824e-8■■■■■ 27.5
TM9SF3-201ENST00000371142 RABEP1Q15276 862 aa26.43■■□□□ 1.82
TM9SF3-201ENST00000371142 HDGFL1Q5TGJ6 251 aa26.43■■□□□ 1.82
TM9SF3-201ENST00000371142 STK38Q15208 465 aa26.43■■□□□ 1.82
TM9SF3-201ENST00000371142 AEBP2Q6ZN18 517 aaPredicted RBP26.43■■□□□ 1.82
TM9SF3-201ENST00000371142 SULT6B1Q6IMI4 303 aa26.43■■□□□ 1.82
TM9SF3-201ENST00000371142 KIF21BO75037 1637 aa26.43■■□□□ 1.82
TM9SF3-201ENST00000371142 MAGEC2Q9UBF1 373 aaPredicted RBP26.43■■□□□ 1.82
TM9SF3-201ENST00000371142 ZNF396Q96N95 335 aaPredicted RBP26.42■■□□□ 1.82
TM9SF3-201ENST00000371142 MBD3O95983 291 aa26.42■■□□□ 1.82
TM9SF3-201ENST00000371142 TATP17735 454 aaPredicted RBP26.41■■□□□ 1.82
TM9SF3-201ENST00000371142 PDCP20941 246 aa26.41■■□□□ 1.82
TM9SF3-201ENST00000371142 FILIP1LQ4L180 1135 aa26.41■■□□□ 1.82
TM9SF3-201ENST00000371142 TXLNAP40222 546 aa26.41■■□□□ 1.82
TM9SF3-201ENST00000371142 MCM2P49736 904 aa26.41■■□□□ 1.82
TM9SF3-201ENST00000371142 ATP2B2Q01814 1243 aa26.41■■□□□ 1.82
TM9SF3-201ENST00000371142 PROSER2Q86WR7 435 aaPredicted RBP26.41■■□□□ 1.82
TM9SF3-201ENST00000371142 KRT18P05783 430 aaKnown RBP26.4■■□□□ 1.82
TM9SF3-201ENST00000371142 SPC24Q8NBT2 197 aa26.4■■□□□ 1.82
TM9SF3-201ENST00000371142 SLC12A5Q9H2X9 1139 aa26.4■■□□□ 1.82
TM9SF3-201ENST00000371142 CDK19Q9BWU1 502 aa26.4■■□□□ 1.82
TM9SF3-201ENST00000371142 SMARCE1Q969G3 411 aa26.39■■□□□ 1.81
TM9SF3-201ENST00000371142 CABP4P57796 275 aa26.38■■□□□ 1.81
TM9SF3-201ENST00000371142 MYL6BP14649 208 aa26.38■■□□□ 1.81
TM9SF3-201ENST00000371142 LRRCC1Q9C099 1032 aa26.38■■□□□ 1.81
TM9SF3-201ENST00000371142 CYP46A1Q9Y6A2 500 aa26.37■■□□□ 1.81
TM9SF3-201ENST00000371142 CCAR1Q8IX12 1150 aaKnown RBP26.37■■□□□ 1.81
TM9SF3-201ENST00000371142 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.37■■□□□ 1.811e-6■■□□□ 12.7
TM9SF3-201ENST00000371142 CABP1Q9NZU7 370 aa26.37■■□□□ 1.81
TM9SF3-201ENST00000371142 DDX54Q8TDD1 881 aaKnown RBP26.37■■□□□ 1.81
TM9SF3-201ENST00000371142 GNL3LQ9NVN8 582 aaKnown RBP26.36■■□□□ 1.81
TM9SF3-201ENST00000371142 PDE3AQ14432 1141 aa26.35■■□□□ 1.81
TM9SF3-201ENST00000371142 CCT4P50991 539 aaKnown RBP26.35■■□□□ 1.81
TM9SF3-201ENST00000371142 CASKIN1Q8WXD9 1431 aa26.34■■□□□ 1.81
TM9SF3-201ENST00000371142 AKNAQ7Z591 1439 aa26.34■■□□□ 1.81
TM9SF3-201ENST00000371142 NOM1Q5C9Z4 860 aaKnown RBP26.33■■□□□ 1.81
TM9SF3-201ENST00000371142 ERCC4Q92889 916 aaPredicted RBP26.33■■□□□ 1.81
TM9SF3-201ENST00000371142 ZNF530Q6P9A1 599 aaPredicted RBP26.33■■□□□ 1.81
TM9SF3-201ENST00000371142 SRCIN1Q9C0H9 1055 aa26.32■■□□□ 1.8
TM9SF3-201ENST00000371142 SERPINC1P01008 464 aa26.32■■□□□ 1.8
TM9SF3-201ENST00000371142 TOM1L2Q6ZVM7 507 aa26.32■■□□□ 1.8
TM9SF3-201ENST00000371142 SYCP1Q15431 976 aa26.32■■□□□ 1.8
TM9SF3-201ENST00000371142 CCDC69A6NI79 296 aa26.31■■□□□ 1.8
TM9SF3-201ENST00000371142 NUP133Q8WUM0 1156 aa26.31■■□□□ 1.8
TM9SF3-201ENST00000371142 PPP1R1BQ9UD71 204 aaPredicted RBP26.31■■□□□ 1.8
TM9SF3-201ENST00000371142 SCAPERQ9BY12 1400 aa26.31■■□□□ 1.8
TM9SF3-201ENST00000371142 MYO6Q9UM54 1294 aa26.31■■□□□ 1.8
TM9SF3-201ENST00000371142 ME1P48163 572 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms