RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RGPD1P0DJD0 1748 aa13.02□□□□□ -0.32
HMGB1P39-201ENST00000366304 HAP1P54257 671 aaPredicted RBP13.02□□□□□ -0.33
HMGB1P39-201ENST00000366304 BTG4Q9NY30 223 aa13.01□□□□□ -0.33
HMGB1P39-201ENST00000366304 PHF8Q9UPP1 1060 aa13.01□□□□□ -0.33
HMGB1P39-201ENST00000366304 ABCC11Q96J66 1382 aa13.01□□□□□ -0.33
HMGB1P39-201ENST00000366304 THSD7AQ9UPZ6 1657 aa13.01□□□□□ -0.33
HMGB1P39-201ENST00000366304 SBNO1A3KN83 1393 aa13□□□□□ -0.33
HMGB1P39-201ENST00000366304 SPATA31A5Q5VU36 1347 aa13□□□□□ -0.33
HMGB1P39-201ENST00000366304 SPATA31A7Q8IWB4 1347 aa13□□□□□ -0.33
HMGB1P39-201ENST00000366304 AKT1S1Q96B36 256 aa13□□□□□ -0.33
HMGB1P39-201ENST00000366304 NRXN1Q9ULB1 1477 aa12.99□□□□□ -0.33
HMGB1P39-201ENST00000366304 SPDYE2BA6NHP3 402 aa12.99□□□□□ -0.33
HMGB1P39-201ENST00000366304 TRIM37O94972 964 aa12.99□□□□□ -0.33
HMGB1P39-201ENST00000366304 SPDYE6P0CI01 402 aa12.99□□□□□ -0.33
HMGB1P39-201ENST00000366304 SPDYE2Q495Y8 402 aa12.99□□□□□ -0.33
HMGB1P39-201ENST00000366304 LMOD2Q6P5Q4 547 aa12.99□□□□□ -0.33
HMGB1P39-201ENST00000366304 RGPD8O14715 1765 aaPredicted RBP12.99□□□□□ -0.33
HMGB1P39-201ENST00000366304 RRBP1Q9P2E9 1410 aaKnown RBP12.96□□□□□ -0.33
HMGB1P39-201ENST00000366304 ARHGEF10O15013 1369 aa12.96□□□□□ -0.33
HMGB1P39-201ENST00000366304 PSME1Q06323 249 aa12.96□□□□□ -0.33
HMGB1P39-201ENST00000366304 KNDC1Q76NI1 1749 aa12.96□□□□□ -0.34
HMGB1P39-201ENST00000366304 YTHDC2Q9H6S0 1430 aaKnown RBP12.96□□□□□ -0.34
HMGB1P39-201ENST00000366304 PMFBP1Q8TBY8 1022 aa12.95□□□□□ -0.34
HMGB1P39-201ENST00000366304 IFT172Q9UG01 1749 aa12.95□□□□□ -0.34
HMGB1P39-201ENST00000366304 RREB1Q92766 1687 aa12.95□□□□□ -0.34
HMGB1P39-201ENST00000366304 SPATA31E1Q6ZUB1 1445 aa12.95□□□□□ -0.34
HMGB1P39-201ENST00000366304 TRPM3Q9HCF6 1732 aaPredicted RBP12.94□□□□□ -0.34
HMGB1P39-201ENST00000366304 CAMTA1Q9Y6Y1 1673 aa12.94□□□□□ -0.34
HMGB1P39-201ENST00000366304 APBA3O96018 575 aa12.94□□□□□ -0.34
HMGB1P39-201ENST00000366304 PPARGC1BQ86YN6 1023 aaKnown RBP12.94□□□□□ -0.34
HMGB1P39-201ENST00000366304 PIK3C2GO75747 1445 aa12.94□□□□□ -0.34
HMGB1P39-201ENST00000366304 COL14A1Q05707 1796 aaKnown RBP12.94□□□□□ -0.34
HMGB1P39-201ENST00000366304 NUP188Q5SRE5 1749 aa12.93□□□□□ -0.34
HMGB1P39-201ENST00000366304 RGL3Q3MIN7 710 aa12.93□□□□□ -0.34
HMGB1P39-201ENST00000366304 ZNF692Q9BU19 519 aaPredicted RBP12.93□□□□□ -0.34
HMGB1P39-201ENST00000366304 SPATA31A1Q5TZJ5 1347 aa12.92□□□□□ -0.34
HMGB1P39-201ENST00000366304 ADGRB2O60241 1585 aa12.92□□□□□ -0.34
HMGB1P39-201ENST00000366304 SAFB2Q14151 953 aaKnown RBP eCLIP12.92□□□□□ -0.34
HMGB1P39-201ENST00000366304 ALS2Q96Q42 1657 aa12.92□□□□□ -0.34
HMGB1P39-201ENST00000366304 CRYBG1Q9Y4K1 1723 aa12.91□□□□□ -0.34
HMGB1P39-201ENST00000366304 FAM196AQ6ZSG2 479 aa12.91□□□□□ -0.34
HMGB1P39-201ENST00000366304 REM2Q8IYK8 340 aaPredicted RBP12.91□□□□□ -0.34
HMGB1P39-201ENST00000366304 SIRT1Q96EB6 747 aa12.91□□□□□ -0.34
HMGB1P39-201ENST00000366304 PARD3Q8TEW0 1356 aa12.91□□□□□ -0.34
HMGB1P39-201ENST00000366304 PRR36Q9H6K5 1346 aa12.9□□□□□ -0.34
HMGB1P39-201ENST00000366304 ZNF784Q8NCA9 323 aaPredicted RBP12.9□□□□□ -0.34
HMGB1P39-201ENST00000366304 PDGFDQ9GZP0 370 aaPredicted RBP12.9□□□□□ -0.34
HMGB1P39-201ENST00000366304 KCNQ2O43526 872 aa12.89□□□□□ -0.35
HMGB1P39-201ENST00000366304 CHRNA2Q15822 529 aa12.89□□□□□ -0.35
HMGB1P39-201ENST00000366304 PRAM1Q96QH2 718 aa12.89□□□□□ -0.35
HMGB1P39-201ENST00000366304 SPON1Q9HCB6 807 aa12.89□□□□□ -0.35
HMGB1P39-201ENST00000366304 NINLQ9Y2I6 1382 aa12.89□□□□□ -0.35
HMGB1P39-201ENST00000366304 UTRNP46939 3433 aa12.88□□□□□ -0.35
HMGB1P39-201ENST00000366304 ANKRD30BQ9BXX2 1392 aa12.88□□□□□ -0.35
HMGB1P39-201ENST00000366304 ANKARQ7Z5J8 1434 aa12.88□□□□□ -0.35
HMGB1P39-201ENST00000366304 ACIN1Q9UKV3 1341 aaKnown RBP12.88□□□□□ -0.35
HMGB1P39-201ENST00000366304 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
HMGB1P39-201ENST00000366304 CFAP70Q5T0N1 1121 aa12.87□□□□□ -0.35
HMGB1P39-201ENST00000366304 C14orf93Q9H972 538 aaKnown RBP12.87□□□□□ -0.35
HMGB1P39-201ENST00000366304 ANO8Q9HCE9 1232 aaPredicted RBP12.87□□□□□ -0.35
HMGB1P39-201ENST00000366304 PRDM11Q9NQV5 511 aa12.87□□□□□ -0.35
HMGB1P39-201ENST00000366304 PPP1R1BQ9UD71 204 aaPredicted RBP12.87□□□□□ -0.35
HMGB1P39-201ENST00000366304 STRN4Q9NRL3 753 aa12.86□□□□□ -0.35
HMGB1P39-201ENST00000366304 SSUH2Q9Y2M2 353 aa12.86□□□□□ -0.35
HMGB1P39-201ENST00000366304 IFFO2Q5TF58 517 aa12.85□□□□□ -0.35
HMGB1P39-201ENST00000366304 PTF1AQ7RTS3 328 aa12.85□□□□□ -0.35
HMGB1P39-201ENST00000366304 HIRIP3Q9BW71 556 aaPredicted RBP12.85□□□□□ -0.35
HMGB1P39-201ENST00000366304 USP35Q9P2H5 1018 aa12.85□□□□□ -0.35
HMGB1P39-201ENST00000366304 SENP3-EIF4A1A0A087X0R7 540 aa12.84□□□□□ -0.35
HMGB1P39-201ENST00000366304 NBPF8Q3BBV2 869 aa12.84□□□□□ -0.35
HMGB1P39-201ENST00000366304 NBPF14Q5TI25 921 aa12.84□□□□□ -0.35
HMGB1P39-201ENST00000366304 NRKQ7Z2Y5 1582 aa12.84□□□□□ -0.35
HMGB1P39-201ENST00000366304 PTGER2P43116 358 aa12.83□□□□□ -0.36
HMGB1P39-201ENST00000366304 LARP1Q6PKG0 1096 aaKnown RBP12.83□□□□□ -0.36
HMGB1P39-201ENST00000366304 CASZ1Q86V15 1759 aa12.83□□□□□ -0.36
HMGB1P39-201ENST00000366304 GPRASP1Q5JY77 1395 aa12.82□□□□□ -0.36
HMGB1P39-201ENST00000366304 SSH2Q76I76 1423 aa12.82□□□□□ -0.36
HMGB1P39-201ENST00000366304 ZC3H6P61129 1189 aaKnown RBP12.82□□□□□ -0.36
HMGB1P39-201ENST00000366304 BARGINQ6ZT62 677 aa12.82□□□□□ -0.36
HMGB1P39-201ENST00000366304 MYOM1P52179 1685 aa12.81□□□□□ -0.36
HMGB1P39-201ENST00000366304 PAK3O75914 559 aaPredicted RBP12.81□□□□□ -0.36
HMGB1P39-201ENST00000366304 C1QTNF8P60827 252 aa12.81□□□□□ -0.36
HMGB1P39-201ENST00000366304 PDE3BQ13370 1112 aa12.81□□□□□ -0.36
HMGB1P39-201ENST00000366304 NUTM2GQ5VZR2 741 aa12.81□□□□□ -0.36
HMGB1P39-201ENST00000366304 CHRDL2Q6WN34 429 aa12.81□□□□□ -0.36
HMGB1P39-201ENST00000366304 DHX57Q6P158 1386 aaKnown RBP12.81□□□□□ -0.36
HMGB1P39-201ENST00000366304 DLC1Q96QB1 1528 aa12.8□□□□□ -0.36
HMGB1P39-201ENST00000366304 ZBTB7AO95365 584 aa12.8□□□□□ -0.36
HMGB1P39-201ENST00000366304 PROM2Q8N271 834 aa12.8□□□□□ -0.36
HMGB1P39-201ENST00000366304 MINK1Q8N4C8 1332 aaPredicted RBP12.8□□□□□ -0.36
HMGB1P39-201ENST00000366304 PHRF1Q9P1Y6 1649 aaKnown RBP12.8□□□□□ -0.36
HMGB1P39-201ENST00000366304 TULP4Q9NRJ4 1543 aa12.79□□□□□ -0.36
HMGB1P39-201ENST00000366304 ADGRB1O14514 1584 aa12.79□□□□□ -0.36
HMGB1P39-201ENST00000366304 POGKQ9P215 609 aa12.79□□□□□ -0.36
HMGB1P39-201ENST00000366304 PEAK1Q9H792 1746 aa12.79□□□□□ -0.36
HMGB1P39-201ENST00000366304 CEP350Q5VT06 3117 aa12.78□□□□□ -0.36
HMGB1P39-201ENST00000366304 PITPNM1O00562 1244 aa12.78□□□□□ -0.36
HMGB1P39-201ENST00000366304 NGDNQ8NEJ9 315 aaKnown RBP12.78□□□□□ -0.36
HMGB1P39-201ENST00000366304 LMO7Q8WWI1 1683 aa12.77□□□□□ -0.36
HMGB1P39-201ENST00000366304 WASLO00401 505 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms