RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 NME9Q86XW9 330 aa25.1■■□□□ 1.61
CLN3-206ENST00000360019 TTC21BQ7Z4L5 1316 aa25.1■■□□□ 1.61
CLN3-206ENST00000360019 PHF8Q9UPP1 1060 aa25.09■■□□□ 1.61
CLN3-206ENST00000360019 ESCO1Q5FWF5 840 aa25.08■■□□□ 1.61
CLN3-206ENST00000360019 C1orf167Q5SNV9 1468 aa25.07■■□□□ 1.6
CLN3-206ENST00000360019 ATF3P18847 181 aa25.07■■□□□ 1.6
CLN3-206ENST00000360019 MST1RQ04912 1400 aa25.07■■□□□ 1.6
CLN3-206ENST00000360019 ORAI2Q96SN7 254 aa25.06■■□□□ 1.6
CLN3-206ENST00000360019 ZRANB1Q9UGI0 708 aa25.06■■□□□ 1.6
CLN3-206ENST00000360019 MSH6P52701 1360 aa25.06■■□□□ 1.6
CLN3-206ENST00000360019 CADPS2Q86UW7 1296 aa25.02■■□□□ 1.6
CLN3-206ENST00000360019 TTC21AQ8NDW8 1320 aa25.02■■□□□ 1.6
CLN3-206ENST00000360019 OVOS2A0A0J9YW53 1432 aa25.01■■□□□ 1.59
CLN3-206ENST00000360019 OVOS2Q6IE36 1432 aa25.01■■□□□ 1.59
CLN3-206ENST00000360019 MTHFSP49914 203 aa25■■□□□ 1.59
CLN3-206ENST00000360019 COG3Q96JB2 828 aa25■■□□□ 1.59
CLN3-206ENST00000360019 SCAF1Q9H7N4 1312 aaKnown RBP24.99■■□□□ 1.59
CLN3-206ENST00000360019 KIF1AQ12756 1690 aa24.98■■□□□ 1.59
CLN3-206ENST00000360019 PIK3C2AO00443 1686 aa24.98■■□□□ 1.59
CLN3-206ENST00000360019 HNRNPUQ00839 825 aaKnown RBP eCLIP24.97■■□□□ 1.59
CLN3-206ENST00000360019 FBLN1P23142 703 aa24.96■■□□□ 1.59
CLN3-206ENST00000360019 FOXO3O43524 673 aa24.96■■□□□ 1.59
CLN3-206ENST00000360019 CENPBP07199 599 aaPredicted RBP24.96■■□□□ 1.59
CLN3-206ENST00000360019 PSME1Q06323 249 aa24.95■■□□□ 1.58
CLN3-206ENST00000360019 USP31Q70CQ4 1352 aa24.95■■□□□ 1.58
CLN3-206ENST00000360019 AATKQ6ZMQ8 1374 aa24.94■■□□□ 1.58
CLN3-206ENST00000360019 LTBP4Q8N2S1 1624 aa24.93■■□□□ 1.58
CLN3-206ENST00000360019 PAK3O75914 559 aaPredicted RBP24.92■■□□□ 1.58
CLN3-206ENST00000360019 POLKQ9UBT6 870 aa24.92■■□□□ 1.58
CLN3-206ENST00000360019 SHPRHQ149N8 1683 aa24.91■■□□□ 1.58
CLN3-206ENST00000360019 WDR43Q15061 677 aaKnown RBP eCLIP24.91■■□□□ 1.58
CLN3-206ENST00000360019 ADAMTS8Q9UP79 889 aa24.91■■□□□ 1.58
CLN3-206ENST00000360019 CFAP53Q96M91 514 aa24.91■■□□□ 1.58
CLN3-206ENST00000360019 COL3A1P02461 1466 aaPredicted RBP24.9■■□□□ 1.58
CLN3-206ENST00000360019 USP54Q70EL1 1684 aa24.9■■□□□ 1.58
CLN3-206ENST00000360019 SMG6Q86US8 1419 aaKnown RBP24.9■■□□□ 1.58
CLN3-206ENST00000360019 INSRP06213 1382 aa24.9■■□□□ 1.58
CLN3-206ENST00000360019 MAP2P11137 1827 aaKnown RBP24.9■■□□□ 1.58
CLN3-206ENST00000360019 MARF1Q9Y4F3 1742 aaKnown RBP24.9■■□□□ 1.58
CLN3-206ENST00000360019 XPCQ01831 940 aaPredicted RBP24.9■■□□□ 1.58
CLN3-206ENST00000360019 PNPLA6Q8IY17 1366 aa24.9■■□□□ 1.58
CLN3-206ENST00000360019 ABTB2Q8N961 1025 aa24.89■■□□□ 1.58
CLN3-206ENST00000360019 NLRP6P59044 892 aa24.89■■□□□ 1.57
CLN3-206ENST00000360019 EMILIN1Q9Y6C2 1016 aa24.89■■□□□ 1.57
CLN3-206ENST00000360019 BLMP54132 1417 aaPredicted RBP24.88■■□□□ 1.57
CLN3-206ENST00000360019 TRPM3Q9HCF6 1732 aaPredicted RBP24.88■■□□□ 1.57
CLN3-206ENST00000360019 RRS1Q15050 365 aaKnown RBP24.87■■□□□ 1.57
CLN3-206ENST00000360019 NUTM2GQ5VZR2 741 aa24.87■■□□□ 1.57
CLN3-206ENST00000360019 KRT28Q7Z3Y7 464 aa24.87■■□□□ 1.57
CLN3-206ENST00000360019 SLAIN2Q9P270 581 aa24.87■■□□□ 1.57
CLN3-206ENST00000360019 BRINP3Q76B58 766 aa24.86■■□□□ 1.57
CLN3-206ENST00000360019 DDX17Q92841 729 aaKnown RBP24.86■■□□□ 1.57
CLN3-206ENST00000360019 AEBP2Q6ZN18 517 aaPredicted RBP24.85■■□□□ 1.57
CLN3-206ENST00000360019 PPM1GO15355 546 aaPredicted RBP24.84■■□□□ 1.57
CLN3-206ENST00000360019 CDK12Q9NYV4 1490 aaPredicted RBP24.84■■□□□ 1.57
CLN3-206ENST00000360019 NPHP3Q7Z494 1330 aa24.83■■□□□ 1.56
CLN3-206ENST00000360019 SENP3-EIF4A1A0A087X0R7 540 aa24.82■■□□□ 1.56
CLN3-206ENST00000360019 SOX12O15370 315 aa24.82■■□□□ 1.56
CLN3-206ENST00000360019 ZBED9Q6R2W3 1325 aa24.82■■□□□ 1.56
CLN3-206ENST00000360019 PXDNQ92626 1479 aa24.81■■□□□ 1.56
CLN3-206ENST00000360019 ALS2Q96Q42 1657 aa24.79■■□□□ 1.56
CLN3-206ENST00000360019 PEAK1Q9H792 1746 aa24.79■■□□□ 1.56
CLN3-206ENST00000360019 DIAPH1O60610 1272 aaKnown RBP24.78■■□□□ 1.56
CLN3-206ENST00000360019 MAP3K19Q56UN5 1328 aa24.78■■□□□ 1.56
CLN3-206ENST00000360019 SBNO1A3KN83 1393 aa24.77■■□□□ 1.56
CLN3-206ENST00000360019 CCDC146Q8IYE0 955 aa24.76■■□□□ 1.55
CLN3-206ENST00000360019 NUDCQ9Y266 331 aa24.76■■□□□ 1.55
CLN3-206ENST00000360019 LMOD2Q6P5Q4 547 aa24.75■■□□□ 1.55
CLN3-206ENST00000360019 NFAT5O94916 1531 aa24.75■■□□□ 1.55
CLN3-206ENST00000360019 SLIT3O75094 1523 aa24.74■■□□□ 1.55
CLN3-206ENST00000360019 U2AF1L5P0DN76 240 aaPredicted RBP24.74■■□□□ 1.55
CLN3-206ENST00000360019 U2AF1Q01081 240 aaKnown RBP eCLIP24.74■■□□□ 1.55
CLN3-206ENST00000360019 TNS3Q68CZ2 1445 aa24.73■■□□□ 1.55
CLN3-206ENST00000360019 USP19O94966 1318 aa24.73■■□□□ 1.55
CLN3-206ENST00000360019 U2SURPO15042 1029 aaKnown RBP24.73■■□□□ 1.55
CLN3-206ENST00000360019 IL13P35225 146 aa24.73■■□□□ 1.55
CLN3-206ENST00000360019 SOS2Q07890 1332 aaPredicted RBP24.71■■□□□ 1.55
CLN3-206ENST00000360019 SPATA31A3Q5VYP0 1347 aa24.71■■□□□ 1.55
CLN3-206ENST00000360019 HSP90AB2PQ58FF8 381 aa24.71■■□□□ 1.55
CLN3-206ENST00000360019 FLT4P35916 1363 aa24.71■■□□□ 1.55
CLN3-206ENST00000360019 KCNH5Q8NCM2 988 aa24.7■■□□□ 1.55
CLN3-206ENST00000360019 NHSL1Q5SYE7 1610 aa24.7■■□□□ 1.54
CLN3-206ENST00000360019 SALL2Q9Y467 1007 aaPredicted RBP24.7■■□□□ 1.54
CLN3-206ENST00000360019 MED1Q15648 1581 aaPredicted RBP24.69■■□□□ 1.54
CLN3-206ENST00000360019 GCP02774 474 aa24.69■■□□□ 1.54
CLN3-206ENST00000360019 KIF24Q5T7B8 1368 aa24.69■■□□□ 1.54
CLN3-206ENST00000360019 AMPHP49418 695 aa24.68■■□□□ 1.54
CLN3-206ENST00000360019 EIF4A2Q14240 407 aaKnown RBP24.68■■□□□ 1.54
CLN3-206ENST00000360019 LTN1O94822 1766 aa24.67■■□□□ 1.54
CLN3-206ENST00000360019 APAF1O14727 1248 aa24.67■■□□□ 1.54
CLN3-206ENST00000360019 PLEKHG5O94827 1062 aa24.67■■□□□ 1.54
CLN3-206ENST00000360019 RUNDC1Q96C34 613 aa24.67■■□□□ 1.54
CLN3-206ENST00000360019 HOXC9P31274 260 aa24.66■■□□□ 1.54
CLN3-206ENST00000360019 IQSEC2Q5JU85 1478 aa24.66■■□□□ 1.54
CLN3-206ENST00000360019 ARHGEF10O15013 1369 aa24.66■■□□□ 1.54
CLN3-206ENST00000360019 ROBO1Q9Y6N7 1651 aa24.65■■□□□ 1.54
CLN3-206ENST00000360019 RTL1A6NKG5 1358 aa24.65■■□□□ 1.54
CLN3-206ENST00000360019 PLEKHF1Q96S99 279 aa24.64■■□□□ 1.54
CLN3-206ENST00000360019 PHRF1Q9P1Y6 1649 aaKnown RBP24.63■■□□□ 1.53
CLN3-206ENST00000360019 CRYBG1Q9Y4K1 1723 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms