RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 NRKQ7Z2Y5 1582 aa26.96■■□□□ 1.91
CLN3-205ENST00000359984 NME9Q86XW9 330 aa26.96■■□□□ 1.91
CLN3-205ENST00000359984 PPP2R1AP30153 589 aa26.95■■□□□ 1.9
CLN3-205ENST00000359984 NLRP13Q86W25 1043 aa26.94■■□□□ 1.9
CLN3-205ENST00000359984 KIF20BQ96Q89 1820 aa26.94■■□□□ 1.9
CLN3-205ENST00000359984 MRS2Q9HD23 443 aa26.93■■□□□ 1.9
CLN3-205ENST00000359984 FOXO3O43524 673 aa26.92■■□□□ 1.9
CLN3-205ENST00000359984 SLAIN2Q9P270 581 aa26.91■■□□□ 1.9
CLN3-205ENST00000359984 ZRANB1Q9UGI0 708 aa26.91■■□□□ 1.9
CLN3-205ENST00000359984 TTC21AQ8NDW8 1320 aa26.91■■□□□ 1.9
CLN3-205ENST00000359984 TNNT2P45379 298 aaPredicted RBP26.91■■□□□ 1.9
CLN3-205ENST00000359984 PSME1Q06323 249 aa26.91■■□□□ 1.9
CLN3-205ENST00000359984 KIF1AQ12756 1690 aa26.91■■□□□ 1.9
CLN3-205ENST00000359984 BRD4O60885 1362 aaPredicted RBP26.91■■□□□ 1.9
CLN3-205ENST00000359984 ANKRD26Q9UPS8 1709 aa26.89■■□□□ 1.9
CLN3-205ENST00000359984 BRINP3Q76B58 766 aa26.86■■□□□ 1.89
CLN3-205ENST00000359984 COG3Q96JB2 828 aa26.86■■□□□ 1.89
CLN3-205ENST00000359984 PAK3O75914 559 aaPredicted RBP26.85■■□□□ 1.89
CLN3-205ENST00000359984 XPCQ01831 940 aaPredicted RBP26.85■■□□□ 1.89
CLN3-205ENST00000359984 KRT28Q7Z3Y7 464 aa26.84■■□□□ 1.89
CLN3-205ENST00000359984 DDX17Q92841 729 aaKnown RBP26.83■■□□□ 1.88
CLN3-205ENST00000359984 OVOS2A0A0J9YW53 1432 aa26.83■■□□□ 1.88
CLN3-205ENST00000359984 OVOS2Q6IE36 1432 aa26.83■■□□□ 1.88
CLN3-205ENST00000359984 USP31Q70CQ4 1352 aa26.81■■□□□ 1.88
CLN3-205ENST00000359984 SCAF1Q9H7N4 1312 aaKnown RBP26.81■■□□□ 1.88
CLN3-205ENST00000359984 PIK3C2AO00443 1686 aa26.81■■□□□ 1.88
CLN3-205ENST00000359984 NPHP3Q7Z494 1330 aa26.8■■□□□ 1.88
CLN3-205ENST00000359984 ABTB2Q8N961 1025 aa26.8■■□□□ 1.88
CLN3-205ENST00000359984 MTHFSP49914 203 aa26.79■■□□□ 1.88
CLN3-205ENST00000359984 NLRP6P59044 892 aa26.79■■□□□ 1.88
CLN3-205ENST00000359984 PNISRQ8TF01 805 aaKnown RBP26.79■■□□□ 1.88
CLN3-205ENST00000359984 FBLN1P23142 703 aa26.78■■□□□ 1.88
CLN3-205ENST00000359984 NUTM2GQ5VZR2 741 aa26.77■■□□□ 1.88
CLN3-205ENST00000359984 TRPM3Q9HCF6 1732 aaPredicted RBP26.77■■□□□ 1.88
CLN3-205ENST00000359984 FAM9BQ8IZU0 186 aa26.76■■□□□ 1.87
CLN3-205ENST00000359984 AATKQ6ZMQ8 1374 aa26.75■■□□□ 1.87
CLN3-205ENST00000359984 PXDNQ92626 1479 aa26.74■■□□□ 1.87
CLN3-205ENST00000359984 YTHDC1Q96MU7 727 aaKnown RBP26.74■■□□□ 1.87
CLN3-205ENST00000359984 POLKQ9UBT6 870 aa26.74■■□□□ 1.87
CLN3-205ENST00000359984 SBNO1A3KN83 1393 aa26.73■■□□□ 1.87
CLN3-205ENST00000359984 USP54Q70EL1 1684 aa26.71■■□□□ 1.87
CLN3-205ENST00000359984 LMOD2Q6P5Q4 547 aa26.7■■□□□ 1.87
CLN3-205ENST00000359984 MARF1Q9Y4F3 1742 aaKnown RBP26.7■■□□□ 1.87
CLN3-205ENST00000359984 SOS2Q07890 1332 aaPredicted RBP26.69■■□□□ 1.86
CLN3-205ENST00000359984 RRS1Q15050 365 aaKnown RBP26.69■■□□□ 1.86
CLN3-205ENST00000359984 SOX12O15370 315 aa26.68■■□□□ 1.86
CLN3-205ENST00000359984 CFAP53Q96M91 514 aa26.68■■□□□ 1.86
CLN3-205ENST00000359984 EMILIN1Q9Y6C2 1016 aa26.68■■□□□ 1.86
CLN3-205ENST00000359984 ALS2Q96Q42 1657 aa26.67■■□□□ 1.86
CLN3-205ENST00000359984 MAP2P11137 1827 aaKnown RBP26.67■■□□□ 1.86
CLN3-205ENST00000359984 SPATA31A3Q5VYP0 1347 aa26.66■■□□□ 1.86
CLN3-205ENST00000359984 TOM1O60784 492 aa26.66■■□□□ 1.86
CLN3-205ENST00000359984 TNS3Q68CZ2 1445 aa26.66■■□□□ 1.86
CLN3-205ENST00000359984 SMG6Q86US8 1419 aaKnown RBP26.66■■□□□ 1.86
CLN3-205ENST00000359984 PPM1GO15355 546 aaPredicted RBP26.66■■□□□ 1.86
CLN3-205ENST00000359984 PNPLA6Q8IY17 1366 aa26.65■■□□□ 1.86
CLN3-205ENST00000359984 ROBO1Q9Y6N7 1651 aa26.65■■□□□ 1.86
CLN3-205ENST00000359984 NHSL1Q5SYE7 1610 aa26.64■■□□□ 1.86
CLN3-205ENST00000359984 IQSEC2Q5JU85 1478 aa26.64■■□□□ 1.86
CLN3-205ENST00000359984 CERKQ8TCT0 537 aa26.63■■□□□ 1.85
CLN3-205ENST00000359984 INSRP06213 1382 aa26.63■■□□□ 1.85
CLN3-205ENST00000359984 USP19O94966 1318 aa26.63■■□□□ 1.85
CLN3-205ENST00000359984 COL3A1P02461 1466 aaPredicted RBP26.62■■□□□ 1.85
CLN3-205ENST00000359984 WDR43Q15061 677 aaKnown RBP eCLIP26.62■■□□□ 1.85
CLN3-205ENST00000359984 MAP3K19Q56UN5 1328 aa26.61■■□□□ 1.85
CLN3-205ENST00000359984 ADAMTS8Q9UP79 889 aa26.61■■□□□ 1.85
CLN3-205ENST00000359984 ARHGEF10O15013 1369 aa26.6■■□□□ 1.85
CLN3-205ENST00000359984 UBAP1LF5GYI3 381 aa26.6■■□□□ 1.85
CLN3-205ENST00000359984 KCNH5Q8NCM2 988 aa26.6■■□□□ 1.85
CLN3-205ENST00000359984 CDK12Q9NYV4 1490 aaPredicted RBP26.6■■□□□ 1.85
CLN3-205ENST00000359984 SLIT3O75094 1523 aa26.6■■□□□ 1.85
CLN3-205ENST00000359984 PLEKHG5O94827 1062 aa26.59■■□□□ 1.85
CLN3-205ENST00000359984 GCP02774 474 aa26.59■■□□□ 1.85
CLN3-205ENST00000359984 NFAT5O94916 1531 aa26.58■■□□□ 1.85
CLN3-205ENST00000359984 SHPRHQ149N8 1683 aa26.58■■□□□ 1.85
CLN3-205ENST00000359984 PIP4K2BP78356 416 aa26.57■■□□□ 1.84
CLN3-205ENST00000359984 DIAPH1O60610 1272 aaKnown RBP26.57■■□□□ 1.84
CLN3-205ENST00000359984 MED1Q15648 1581 aaPredicted RBP26.57■■□□□ 1.84
CLN3-205ENST00000359984 AHDC1Q5TGY3 1603 aaPredicted RBP26.56■■□□□ 1.84
CLN3-205ENST00000359984 PEAK1Q9H792 1746 aa26.56■■□□□ 1.84
CLN3-205ENST00000359984 AMPHP49418 695 aa26.53■■□□□ 1.84
CLN3-205ENST00000359984 CABLES1Q8TDN4 633 aa26.53■■□□□ 1.84
CLN3-205ENST00000359984 NUDCQ9Y266 331 aa26.53■■□□□ 1.84
CLN3-205ENST00000359984 FLT4P35916 1363 aa26.53■■□□□ 1.84
CLN3-205ENST00000359984 HNRNPUQ00839 825 aaKnown RBP eCLIP26.53■■□□□ 1.84
CLN3-205ENST00000359984 HSP90AB2PQ58FF8 381 aa26.53■■□□□ 1.84
CLN3-205ENST00000359984 KIF24Q5T7B8 1368 aa26.52■■□□□ 1.84
CLN3-205ENST00000359984 IL13P35225 146 aa26.52■■□□□ 1.84
CLN3-205ENST00000359984 ARHGEF25Q86VW2 580 aa26.51■■□□□ 1.83
CLN3-205ENST00000359984 LRRC59Q96AG4 307 aaKnown RBP26.51■■□□□ 1.83
CLN3-205ENST00000359984 BLMP54132 1417 aaPredicted RBP26.5■■□□□ 1.83
CLN3-205ENST00000359984 U2SURPO15042 1029 aaKnown RBP26.5■■□□□ 1.83
CLN3-205ENST00000359984 HOXC9P31274 260 aa26.5■■□□□ 1.83
CLN3-205ENST00000359984 U2AF1L5P0DN76 240 aaPredicted RBP26.49■■□□□ 1.83
CLN3-205ENST00000359984 U2AF1Q01081 240 aaKnown RBP eCLIP26.49■■□□□ 1.83
CLN3-205ENST00000359984 PHRF1Q9P1Y6 1649 aaKnown RBP26.48■■□□□ 1.83
CLN3-205ENST00000359984 CENPBP07199 599 aaPredicted RBP26.48■■□□□ 1.83
CLN3-205ENST00000359984 EIF4A2Q14240 407 aaKnown RBP26.48■■□□□ 1.83
CLN3-205ENST00000359984 CRYBG1Q9Y4K1 1723 aa26.48■■□□□ 1.83
CLN3-205ENST00000359984 RTL1A6NKG5 1358 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms