RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 DDX19BQ9UMR2 479 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 DDX49Q9Y6V7 483 aaKnown RBP8.47□□□□□ -1.05
VPS39-202ENST00000348544 CFAP74Q9C0B2 1584 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 ABCA6Q8N139 1617 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 ADGRB2O60241 1585 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 PTPRTO14522 1441 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 ZNF500O60304 480 aaPredicted RBP8.47□□□□□ -1.05
VPS39-202ENST00000348544 ZNF445P59923 1031 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 FBLN2P98095 1184 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 XPCQ01831 940 aaPredicted RBP8.47□□□□□ -1.05
VPS39-202ENST00000348544 TMEM57Q8N5G2 664 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 PDLIM2Q96JY6 352 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 NOL7Q9UMY1 257 aaKnown RBP8.47□□□□□ -1.05
VPS39-202ENST00000348544 EXOSC9Q06265 439 aaKnown RBP8.46□□□□□ -1.06
VPS39-202ENST00000348544 RBSNQ9H1K0 784 aa8.46□□□□□ -1.06
VPS39-202ENST00000348544 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.46□□□□□ -1.06
VPS39-202ENST00000348544 AK9Q5TCS8 1911 aa8.46□□□□□ -1.06
VPS39-202ENST00000348544 UQCRHLA0A096LP55 91 aa8.46□□□□□ -1.06
VPS39-202ENST00000348544 UQCRHP07919 91 aa8.46□□□□□ -1.06
VPS39-202ENST00000348544 MTHFSP49914 203 aa8.46□□□□□ -1.06
VPS39-202ENST00000348544 ATF7IPQ6VMQ6 1270 aa8.46□□□□□ -1.06
VPS39-202ENST00000348544 NOS1P29475 1434 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 ZSCAN23Q3MJ62 389 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 HS1BP3Q53T59 392 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 BMP2KLQ5H9B9 411 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 CHD1LQ86WJ1 897 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 ANP32BQ92688 251 aaKnown RBP8.45□□□□□ -1.06
VPS39-202ENST00000348544 MAP7D2Q96T17 732 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 NOB1Q9ULX3 412 aaKnown RBP8.45□□□□□ -1.06
VPS39-202ENST00000348544 ERCC6Q03468 1493 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 CAVIN1Q6NZI2 390 aaKnown RBP8.45□□□□□ -1.06
VPS39-202ENST00000348544 TBC1D9Q6ZT07 1266 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 STAC3Q96MF2 364 aa8.45□□□□□ -1.06
VPS39-202ENST00000348544 MYO3AQ8NEV4 1616 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 CD109Q6YHK3 1445 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 GOLGA6L22H0YM25 854 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 PLEKHG5O94827 1062 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 CT47B1P0C2W7 299 aaPredicted RBP8.44□□□□□ -1.06
VPS39-202ENST00000348544 MAP3K4Q9Y6R4 1608 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 ADGRF5Q8IZF2 1346 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 MCTP1Q6DN14 999 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 ARID3AQ99856 593 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 SLC12A5Q9H2X9 1139 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 LMBRD1Q9NUN5 540 aa8.44□□□□□ -1.06
VPS39-202ENST00000348544 PRIM1P49642 420 aaKnown RBP8.43□□□□□ -1.06
VPS39-202ENST00000348544 PKP1Q13835 747 aa8.43□□□□□ -1.06
VPS39-202ENST00000348544 ADGRL1O94910 1474 aa8.43□□□□□ -1.06
VPS39-202ENST00000348544 SBNO2Q9Y2G9 1366 aa8.43□□□□□ -1.06
VPS39-202ENST00000348544 CYP2E1P05181 493 aaPredicted RBP8.43□□□□□ -1.06
VPS39-202ENST00000348544 ZKSCAN5Q9Y2L8 839 aa8.43□□□□□ -1.06
VPS39-202ENST00000348544 UGGT1Q9NYU2 1555 aa8.42□□□□□ -1.06
VPS39-202ENST00000348544 U2AF1L5P0DN76 240 aaPredicted RBP8.42□□□□□ -1.06
VPS39-202ENST00000348544 U2AF1Q01081 240 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS39-202ENST00000348544 SMAP1Q8IYB5 467 aaPredicted RBP8.42□□□□□ -1.06
VPS39-202ENST00000348544 RBM27Q9P2N5 1060 aaKnown RBP8.42□□□□□ -1.06
VPS39-202ENST00000348544 TRIM35Q9UPQ4 493 aa8.42□□□□□ -1.06
VPS39-202ENST00000348544 PPIP5K1Q6PFW1 1433 aa8.42□□□□□ -1.06
VPS39-202ENST00000348544 USP32Q8NFA0 1604 aa8.42□□□□□ -1.06
VPS39-202ENST00000348544 NCLP19338 710 aaKnown RBP8.42□□□□□ -1.06
VPS39-202ENST00000348544 MYOM2P54296 1465 aa8.42□□□□□ -1.06
VPS39-202ENST00000348544 DYNC1I1O14576 645 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 GPT2Q8TD30 523 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 PRDM10Q9NQV6 1147 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 ANKRD45Q5TZF3 282 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 CFAP53Q96M91 514 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 PLEKHF1Q96S99 279 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 INO80Q9ULG1 1556 aaPredicted RBP8.41□□□□□ -1.06
VPS39-202ENST00000348544 ZC3H13Q5T200 1668 aaKnown RBP8.41□□□□□ -1.06
VPS39-202ENST00000348544 PPRC1Q5VV67 1664 aaKnown RBP8.41□□□□□ -1.06
VPS39-202ENST00000348544 ABCC11Q96J66 1382 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 TRAPPC8Q9Y2L5 1435 aa8.41□□□□□ -1.06
VPS39-202ENST00000348544 MED14O60244 1454 aa8.4□□□□□ -1.06
VPS39-202ENST00000348544 CHAMP1Q96JM3 812 aa8.4□□□□□ -1.06
VPS39-202ENST00000348544 KIF16BQ96L93 1317 aa8.4□□□□□ -1.06
VPS39-202ENST00000348544 TET3O43151 1660 aa8.4□□□□□ -1.06
VPS39-202ENST00000348544 TMPOP42166 694 aaKnown RBP8.4□□□□□ -1.07
VPS39-202ENST00000348544 C1orf115Q9H7X2 142 aa8.4□□□□□ -1.07
VPS39-202ENST00000348544 NEURL4Q96JN8 1562 aa8.4□□□□□ -1.07
VPS39-202ENST00000348544 DEPDC5O75140 1603 aa8.4□□□□□ -1.07
VPS39-202ENST00000348544 IFT172Q9UG01 1749 aa8.4□□□□□ -1.07
VPS39-202ENST00000348544 SASS6Q6UVJ0 657 aa8.39□□□□□ -1.07
VPS39-202ENST00000348544 JARID2Q92833 1246 aaPredicted RBP8.39□□□□□ -1.07
VPS39-202ENST00000348544 ZHX1Q9UKY1 873 aaPredicted RBP8.39□□□□□ -1.07
VPS39-202ENST00000348544 NSFL1CQ9UNZ2 370 aaKnown RBP8.39□□□□□ -1.07
VPS39-202ENST00000348544 PRPF40AO75400 957 aaKnown RBP8.39□□□□□ -1.07
VPS39-202ENST00000348544 SLC4A2P04920 1241 aa8.39□□□□□ -1.07
VPS39-202ENST00000348544 CSPP1Q1MSJ5 1256 aa8.39□□□□□ -1.07
VPS39-202ENST00000348544 SIRT2Q8IXJ6 389 aa8.39□□□□□ -1.07
VPS39-202ENST00000348544 TMEM63CQ9P1W3 806 aa8.39□□□□□ -1.07
VPS39-202ENST00000348544 ZDHHC9Q9Y397 364 aa8.39□□□□□ -1.07
VPS39-202ENST00000348544 NRXN1Q9ULB1 1477 aa8.39□□□□□ -1.07
VPS39-202ENST00000348544 MROH2AA6NES4 1674 aa8.38□□□□□ -1.07
VPS39-202ENST00000348544 QRICH2Q9H0J4 1663 aa8.38□□□□□ -1.07
VPS39-202ENST00000348544 GSPT1P15170 499 aaKnown RBP8.38□□□□□ -1.07
VPS39-202ENST00000348544 MCM5P33992 734 aa8.38□□□□□ -1.07
VPS39-202ENST00000348544 NUCB2P80303 420 aa8.38□□□□□ -1.07
VPS39-202ENST00000348544 MTERF4Q7Z6M4 381 aaKnown RBP8.38□□□□□ -1.07
VPS39-202ENST00000348544 ABCC1P33527 1531 aa8.38□□□□□ -1.07
VPS39-202ENST00000348544 ZBTB7BO15156 539 aaPredicted RBP8.38□□□□□ -1.07
VPS39-202ENST00000348544 CDC45O75419 566 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms