RNA–Protein interactions for RNA: ENST00000346213.8

RAB5C-201, Transcript of RAB5C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB5C, Length 1,671 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-201ENST00000346213 QTRT2Q9H974 415 aaKnown RBP22.93■■□□□ 1.26
RAB5C-201ENST00000346213 USP21Q9UK80 565 aa22.93■■□□□ 1.26
RAB5C-201ENST00000346213 CABP1Q9NZU7 370 aa22.91■■□□□ 1.26
RAB5C-201ENST00000346213 PLCH1Q4KWH8 1693 aa22.9■■□□□ 1.26
RAB5C-201ENST00000346213 NUTM2GQ5VZR2 741 aa22.9■■□□□ 1.26
RAB5C-201ENST00000346213 PHRF1Q9P1Y6 1649 aaKnown RBP22.9■■□□□ 1.26
RAB5C-201ENST00000346213 SBNO2Q9Y2G9 1366 aa22.9■■□□□ 1.26
RAB5C-201ENST00000346213 RXRBP28702 533 aa22.9■■□□□ 1.26
RAB5C-201ENST00000346213 PAK3O75914 559 aaPredicted RBP22.89■■□□□ 1.25
RAB5C-201ENST00000346213 SSH2Q76I76 1423 aa22.88■■□□□ 1.25
RAB5C-201ENST00000346213 GLI3P10071 1580 aa22.88■■□□□ 1.25
RAB5C-201ENST00000346213 EVC2Q86UK5 1308 aa22.88■■□□□ 1.25
RAB5C-201ENST00000346213 FAM83GA6ND36 823 aa22.87■■□□□ 1.25
RAB5C-201ENST00000346213 TESK2Q96S53 571 aa22.87■■□□□ 1.25
RAB5C-201ENST00000346213 CDK12Q9NYV4 1490 aaPredicted RBP22.87■■□□□ 1.25
RAB5C-201ENST00000346213 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.87■■□□□ 1.25
RAB5C-201ENST00000346213 CD163L1Q9NR16 1453 aa22.86■■□□□ 1.25
RAB5C-201ENST00000346213 USP6P35125 1406 aa22.86■■□□□ 1.25
RAB5C-201ENST00000346213 NRKQ7Z2Y5 1582 aa22.86■■□□□ 1.25
RAB5C-201ENST00000346213 NRAPQ86VF7 1730 aa22.85■■□□□ 1.25
RAB5C-201ENST00000346213 RBM6P78332 1123 aaKnown RBP22.84■■□□□ 1.25
RAB5C-201ENST00000346213 PIK3C2AO00443 1686 aa22.83■■□□□ 1.25
RAB5C-201ENST00000346213 ST20-MTHFSA0A0A6YYL1 179 aa22.83■■□□□ 1.24
RAB5C-201ENST00000346213 CPSF1Q10570 1443 aaKnown RBP22.82■■□□□ 1.24
RAB5C-201ENST00000346213 TRPC5Q9UL62 973 aaPredicted RBP22.82■■□□□ 1.24
RAB5C-201ENST00000346213 USP19O94966 1318 aa22.82■■□□□ 1.24
RAB5C-201ENST00000346213 CLSPNQ9HAW4 1339 aa22.82■■□□□ 1.24
RAB5C-201ENST00000346213 UNC5CLQ8IV45 518 aa22.81■■□□□ 1.24
RAB5C-201ENST00000346213 AKAP12Q02952 1782 aa22.81■■□□□ 1.24
RAB5C-201ENST00000346213 EP400Q96L91 3159 aa22.81■■□□□ 1.24
RAB5C-201ENST00000346213 HAP1P54257 671 aaPredicted RBP22.81■■□□□ 1.24
RAB5C-201ENST00000346213 KIAA0232Q92628 1395 aa22.8■■□□□ 1.24
RAB5C-201ENST00000346213 NWD2Q9ULI1 1742 aa22.8■■□□□ 1.24
RAB5C-201ENST00000346213 USP47Q96K76 1375 aa22.78■■□□□ 1.24
RAB5C-201ENST00000346213 COL14A1Q05707 1796 aaKnown RBP22.78■■□□□ 1.24
RAB5C-201ENST00000346213 CHRNA2Q15822 529 aa22.77■■□□□ 1.24
RAB5C-201ENST00000346213 GJD4Q96KN9 370 aaPredicted RBP22.77■■□□□ 1.24
RAB5C-201ENST00000346213 ATAD2Q6PL18 1390 aa22.77■■□□□ 1.24
RAB5C-201ENST00000346213 ABTB2Q8N961 1025 aa22.77■■□□□ 1.24
RAB5C-201ENST00000346213 MON2Q7Z3U7 1717 aa22.76■■□□□ 1.23
RAB5C-201ENST00000346213 SLIT3O75094 1523 aa22.76■■□□□ 1.23
RAB5C-201ENST00000346213 ZC3H6P61129 1189 aaKnown RBP22.75■■□□□ 1.23
RAB5C-201ENST00000346213 BTG4Q9NY30 223 aa22.75■■□□□ 1.23
RAB5C-201ENST00000346213 SLC12A5Q9H2X9 1139 aa22.74■■□□□ 1.23
RAB5C-201ENST00000346213 ZRANB1Q9UGI0 708 aa22.74■■□□□ 1.23
RAB5C-201ENST00000346213 LMO7Q8WWI1 1683 aa22.74■■□□□ 1.23
RAB5C-201ENST00000346213 TTC21BQ7Z4L5 1316 aa22.74■■□□□ 1.23
RAB5C-201ENST00000346213 VPS72Q15906 364 aa22.73■■□□□ 1.23
RAB5C-201ENST00000346213 UPF1Q92900 1129 aaKnown RBP eCLIP22.73■■□□□ 1.232e-11■■■■■ 41.6
RAB5C-201ENST00000346213 CAMTA1Q9Y6Y1 1673 aa22.72■■□□□ 1.23
RAB5C-201ENST00000346213 PRDM11Q9NQV5 511 aa22.71■■□□□ 1.23
RAB5C-201ENST00000346213 A0A1W2PP64 1363 aa22.71■■□□□ 1.23
RAB5C-201ENST00000346213 BRD4O60885 1362 aaPredicted RBP22.7■■□□□ 1.22
RAB5C-201ENST00000346213 KTN1Q86UP2 1357 aaKnown RBP22.7■■□□□ 1.22
RAB5C-201ENST00000346213 TIMELESSQ9UNS1 1208 aa22.7■■□□□ 1.22
RAB5C-201ENST00000346213 GCP02774 474 aa22.69■■□□□ 1.22
RAB5C-201ENST00000346213 CPDO75976 1380 aa22.69■■□□□ 1.22
RAB5C-201ENST00000346213 NLRP6P59044 892 aa22.68■■□□□ 1.22
RAB5C-201ENST00000346213 BRWD3Q6RI45 1802 aa22.68■■□□□ 1.22
RAB5C-201ENST00000346213 NFAT5O94916 1531 aa22.67■■□□□ 1.22
RAB5C-201ENST00000346213 TMC1Q8TDI8 760 aa22.66■■□□□ 1.22
RAB5C-201ENST00000346213 NLRP13Q86W25 1043 aa22.65■■□□□ 1.22
RAB5C-201ENST00000346213 NME9Q86XW9 330 aa22.65■■□□□ 1.22
RAB5C-201ENST00000346213 COL18A1P39060 1754 aa22.65■■□□□ 1.22
RAB5C-201ENST00000346213 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.65■■□□□ 1.22
RAB5C-201ENST00000346213 SPATA31A5Q5VU36 1347 aa22.64■■□□□ 1.21
RAB5C-201ENST00000346213 SPATA31A7Q8IWB4 1347 aa22.64■■□□□ 1.21
RAB5C-201ENST00000346213 ONECUT3O60422 494 aaPredicted RBP22.64■■□□□ 1.21
RAB5C-201ENST00000346213 ZNF692Q9BU19 519 aaPredicted RBP22.64■■□□□ 1.21
RAB5C-201ENST00000346213 USP54Q70EL1 1684 aa22.64■■□□□ 1.21
RAB5C-201ENST00000346213 THSD7AQ9UPZ6 1657 aa22.63■■□□□ 1.21
RAB5C-201ENST00000346213 MYOM1P52179 1685 aa22.63■■□□□ 1.21
RAB5C-201ENST00000346213 SEPT12Q8IYM1 358 aa22.62■■□□□ 1.21
RAB5C-201ENST00000346213 PUS7Q96PZ0 661 aaKnown RBP22.62■■□□□ 1.21
RAB5C-201ENST00000346213 CCDC9Q9Y3X0 531 aaKnown RBP22.62■■□□□ 1.21
RAB5C-201ENST00000346213 FAM98CQ17RN3 349 aaKnown RBP22.62■■□□□ 1.21
RAB5C-201ENST00000346213 STRN4Q9NRL3 753 aa22.62■■□□□ 1.21
RAB5C-201ENST00000346213 COL5A2P05997 1499 aaPredicted RBP22.61■■□□□ 1.21
RAB5C-201ENST00000346213 TTC21AQ8NDW8 1320 aa22.61■■□□□ 1.21
RAB5C-201ENST00000346213 SOX12O15370 315 aa22.61■■□□□ 1.21
RAB5C-201ENST00000346213 AXIN2Q9Y2T1 843 aa22.61■■□□□ 1.21
RAB5C-201ENST00000346213 EDC4Q6P2E9 1401 aaKnown RBP22.6■■□□□ 1.21
RAB5C-201ENST00000346213 USP31Q70CQ4 1352 aa22.6■■□□□ 1.21
RAB5C-201ENST00000346213 LARP1Q6PKG0 1096 aaKnown RBP22.6■■□□□ 1.21
RAB5C-201ENST00000346213 SPATA31A1Q5TZJ5 1347 aa22.6■■□□□ 1.21
RAB5C-201ENST00000346213 OVOS2A0A0J9YW53 1432 aa22.59■■□□□ 1.21
RAB5C-201ENST00000346213 OVOS2Q6IE36 1432 aa22.59■■□□□ 1.21
RAB5C-201ENST00000346213 ZBTB7CA1YPR0 619 aa22.58■■□□□ 1.2
RAB5C-201ENST00000346213 ARHGEF25Q86VW2 580 aa22.57■■□□□ 1.2
RAB5C-201ENST00000346213 AATKQ6ZMQ8 1374 aa22.57■■□□□ 1.2
RAB5C-201ENST00000346213 TMF1P82094 1093 aa22.55■■□□□ 1.2
RAB5C-201ENST00000346213 FAM182BQ5T319 152 aa22.55■■□□□ 1.2
RAB5C-201ENST00000346213 HSPA5P11021 654 aaKnown RBP22.55■■□□□ 1.2
RAB5C-201ENST00000346213 ANKRD36BQ8N2N9 1353 aa22.54■■□□□ 1.2
RAB5C-201ENST00000346213 HDGFL2Q7Z4V5 671 aaPredicted RBP22.54■■□□□ 1.2
RAB5C-201ENST00000346213 NINLQ9Y2I6 1382 aa22.54■■□□□ 1.2
RAB5C-201ENST00000346213 RGPD5Q99666 1765 aa22.53■■□□□ 1.2
RAB5C-201ENST00000346213 FBLN1P23142 703 aa22.53■■□□□ 1.2
RAB5C-201ENST00000346213 USP35Q9P2H5 1018 aa22.53■■□□□ 1.2
RAB5C-201ENST00000346213 TERF2IPQ9NYB0 399 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms