RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 UGGT1Q9NYU2 1555 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 PPRC1Q5VV67 1664 aaKnown RBP12.11□□□□□ -0.47
HOXA1-201ENST00000343060 MED14O60244 1454 aa12.1□□□□□ -0.47
HOXA1-201ENST00000343060 KIF16BQ96L93 1317 aa12.1□□□□□ -0.47
HOXA1-201ENST00000343060 BMP2KLQ5H9B9 411 aa12.1□□□□□ -0.47
HOXA1-201ENST00000343060 ATF7IPQ6VMQ6 1270 aa12.1□□□□□ -0.47
HOXA1-201ENST00000343060 ZBTB40Q9NUA8 1239 aa12.1□□□□□ -0.47
HOXA1-201ENST00000343060 FANCAO15360 1455 aa12.09□□□□□ -0.47
HOXA1-201ENST00000343060 CD109Q6YHK3 1445 aa12.09□□□□□ -0.47
HOXA1-201ENST00000343060 IL16Q14005 1332 aa12.09□□□□□ -0.47
HOXA1-201ENST00000343060 ZSCAN30Q86W11 494 aa12.09□□□□□ -0.47
HOXA1-201ENST00000343060 COL3A1P02461 1466 aaPredicted RBP12.09□□□□□ -0.47
HOXA1-201ENST00000343060 OFD1O75665 1012 aa12.09□□□□□ -0.47
HOXA1-201ENST00000343060 HSP90AB1P08238 724 aaKnown RBP12.09□□□□□ -0.47
HOXA1-201ENST00000343060 MTHFSP49914 203 aa12.09□□□□□ -0.47
HOXA1-201ENST00000343060 SMC4Q9NTJ3 1288 aa12.09□□□□□ -0.47
HOXA1-201ENST00000343060 SPAG9O60271 1321 aaKnown RBP12.08□□□□□ -0.47
HOXA1-201ENST00000343060 ZCCHC11Q5TAX3 1644 aaKnown RBP12.08□□□□□ -0.48
HOXA1-201ENST00000343060 ATP7AQ04656 1500 aa12.08□□□□□ -0.48
HOXA1-201ENST00000343060 KLHL40Q2TBA0 621 aa12.08□□□□□ -0.48
HOXA1-201ENST00000343060 SSH1Q8WYL5 1049 aa12.08□□□□□ -0.48
HOXA1-201ENST00000343060 PUS7Q96PZ0 661 aaKnown RBP12.08□□□□□ -0.48
HOXA1-201ENST00000343060 PPLO60437 1756 aa12.07□□□□□ -0.48
HOXA1-201ENST00000343060 LMTK2Q8IWU2 1503 aa12.07□□□□□ -0.48
HOXA1-201ENST00000343060 K7ELQ4 463 aaPredicted RBP12.07□□□□□ -0.48
HOXA1-201ENST00000343060 HS1BP3Q53T59 392 aa12.07□□□□□ -0.48
HOXA1-201ENST00000343060 KIAA1211Q6ZU35 1233 aa12.07□□□□□ -0.48
HOXA1-201ENST00000343060 ITPRIPQ8IWB1 547 aa12.07□□□□□ -0.48
HOXA1-201ENST00000343060 NASPP49321 788 aaPredicted RBP12.07□□□□□ -0.48
HOXA1-201ENST00000343060 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.07□□□□□ -0.48
HOXA1-201ENST00000343060 EXOSC9Q06265 439 aaKnown RBP12.06□□□□□ -0.48
HOXA1-201ENST00000343060 ZNF445P59923 1031 aa12.06□□□□□ -0.48
HOXA1-201ENST00000343060 CHD1LQ86WJ1 897 aa12.06□□□□□ -0.48
HOXA1-201ENST00000343060 TMEM57Q8N5G2 664 aa12.06□□□□□ -0.48
HOXA1-201ENST00000343060 PLEKHF1Q96S99 279 aa12.06□□□□□ -0.48
HOXA1-201ENST00000343060 ANKRD36BQ8N2N9 1353 aa12.06□□□□□ -0.48
HOXA1-201ENST00000343060 UHRF1BP1LA0JNW5 1464 aa12.06□□□□□ -0.48
HOXA1-201ENST00000343060 CD2BP2O95400 341 aaKnown RBP12.05□□□□□ -0.48
HOXA1-201ENST00000343060 TSR2Q969E8 191 aaKnown RBP12.05□□□□□ -0.48
HOXA1-201ENST00000343060 SLC12A5Q9H2X9 1139 aa12.05□□□□□ -0.48
HOXA1-201ENST00000343060 CALD1Q05682 793 aaKnown RBP12.05□□□□□ -0.48
HOXA1-201ENST00000343060 TULP4Q9NRJ4 1543 aa12.04□□□□□ -0.48
HOXA1-201ENST00000343060 ANKRD26Q9UPS8 1709 aa12.04□□□□□ -0.48
HOXA1-201ENST00000343060 BRPF1P55201 1214 aaPredicted RBP12.04□□□□□ -0.48
HOXA1-201ENST00000343060 NOB1Q9ULX3 412 aaKnown RBP12.04□□□□□ -0.48
HOXA1-201ENST00000343060 TRIM35Q9UPQ4 493 aa12.04□□□□□ -0.48
HOXA1-201ENST00000343060 PIK3R4Q99570 1358 aa12.04□□□□□ -0.48
HOXA1-201ENST00000343060 GOLGA6L22H0YM25 854 aa12.04□□□□□ -0.48
HOXA1-201ENST00000343060 TNNT2P45379 298 aaPredicted RBP12.04□□□□□ -0.48
HOXA1-201ENST00000343060 ABCA9Q8IUA7 1624 aa12.04□□□□□ -0.48
HOXA1-201ENST00000343060 U2AF1L5P0DN76 240 aaPredicted RBP12.03□□□□□ -0.48
HOXA1-201ENST00000343060 SSFA2P28290 1259 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 TMPOP42166 694 aaKnown RBP12.03□□□□□ -0.48
HOXA1-201ENST00000343060 RIPK4P57078 832 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 U2AF1Q01081 240 aaKnown RBP eCLIP12.03□□□□□ -0.48
HOXA1-201ENST00000343060 ALDH1L2Q3SY69 923 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 PDLIM2Q96JY6 352 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 CHD1O14646 1710 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 ARHGEF28Q8N1W1 1705 aaKnown RBP12.03□□□□□ -0.48
HOXA1-201ENST00000343060 IPO8O15397 1037 aaKnown RBP12.03□□□□□ -0.48
HOXA1-201ENST00000343060 BAG4O95429 457 aaKnown RBP12.03□□□□□ -0.48
HOXA1-201ENST00000343060 MAP7D2Q96T17 732 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 PPIP5K1Q6PFW1 1433 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 CDC42BPGQ6DT37 1551 aa12.03□□□□□ -0.48
HOXA1-201ENST00000343060 ZNF500O60304 480 aaPredicted RBP12.02□□□□□ -0.48
HOXA1-201ENST00000343060 GAS2L2Q8NHY3 880 aa12.02□□□□□ -0.48
HOXA1-201ENST00000343060 LNPKQ9C0E8 428 aa12.02□□□□□ -0.48
HOXA1-201ENST00000343060 CYP2E1P05181 493 aaPredicted RBP12.02□□□□□ -0.49
HOXA1-201ENST00000343060 PTCH1Q13635 1447 aa12.02□□□□□ -0.49
HOXA1-201ENST00000343060 ERCC6L2Q5T890 1561 aa12.02□□□□□ -0.49
HOXA1-201ENST00000343060 ANP32BQ92688 251 aaKnown RBP12.02□□□□□ -0.49
HOXA1-201ENST00000343060 GCC1Q96CN9 775 aa12.02□□□□□ -0.49
HOXA1-201ENST00000343060 TBC1D9Q6ZT07 1266 aa12.01□□□□□ -0.49
HOXA1-201ENST00000343060 C14orf93Q9H972 538 aaKnown RBP12.01□□□□□ -0.49
HOXA1-201ENST00000343060 GLI2P10070 1586 aa12.01□□□□□ -0.49
HOXA1-201ENST00000343060 MSNP26038 577 aaKnown RBP12.01□□□□□ -0.49
HOXA1-201ENST00000343060 NOL7Q9UMY1 257 aaKnown RBP12.01□□□□□ -0.49
HOXA1-201ENST00000343060 ZNF428Q96B54 188 aa12□□□□□ -0.49
HOXA1-201ENST00000343060 AFAP1Q8N556 730 aa12□□□□□ -0.49
HOXA1-201ENST00000343060 DDX49Q9Y6V7 483 aaKnown RBP12□□□□□ -0.49
HOXA1-201ENST00000343060 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.99□□□□□ -0.49
HOXA1-201ENST00000343060 CHMP4BQ9H444 224 aaKnown RBP11.98□□□□□ -0.49
HOXA1-201ENST00000343060 YEATS2Q9ULM3 1422 aa11.98□□□□□ -0.49
HOXA1-201ENST00000343060 CDC45O75419 566 aa11.98□□□□□ -0.49
HOXA1-201ENST00000343060 MCM5P33992 734 aa11.98□□□□□ -0.49
HOXA1-201ENST00000343060 NUCB2P80303 420 aa11.98□□□□□ -0.49
HOXA1-201ENST00000343060 RABEP1Q15276 862 aa11.98□□□□□ -0.49
HOXA1-201ENST00000343060 RBM42Q9BTD8 480 aaKnown RBP11.98□□□□□ -0.49
HOXA1-201ENST00000343060 LMBRD1Q9NUN5 540 aa11.98□□□□□ -0.49
HOXA1-201ENST00000343060 TRAK1Q9UPV9 953 aa11.98□□□□□ -0.49
HOXA1-201ENST00000343060 ZSCAN23Q3MJ62 389 aa11.97□□□□□ -0.49
HOXA1-201ENST00000343060 ZBTB7BO15156 539 aaPredicted RBP11.97□□□□□ -0.49
HOXA1-201ENST00000343060 ARHGAP45Q92619 1136 aa11.97□□□□□ -0.49
HOXA1-201ENST00000343060 CFAP44Q96MT7 982 aa11.97□□□□□ -0.49
HOXA1-201ENST00000343060 PRDM4Q9UKN5 801 aa11.97□□□□□ -0.49
HOXA1-201ENST00000343060 PNPLA6Q8IY17 1366 aa11.96□□□□□ -0.49
HOXA1-201ENST00000343060 EVC2Q86UK5 1308 aa11.96□□□□□ -0.49
HOXA1-201ENST00000343060 KIF3BO15066 747 aa11.96□□□□□ -0.49
HOXA1-201ENST00000343060 FOXD4L1Q9NU39 408 aa11.96□□□□□ -0.49
HOXA1-201ENST00000343060 MTERF4Q7Z6M4 381 aaKnown RBP11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms