RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 CABP1Q9NZU7 370 aa28.73■■■□□ 2.19
SYNE2-201ENST00000341472 NUTM2GQ5VZR2 741 aa28.72■■■□□ 2.19
SYNE2-201ENST00000341472 ABTB2Q8N961 1025 aa28.71■■■□□ 2.19
SYNE2-201ENST00000341472 BTG4Q9NY30 223 aa28.71■■■□□ 2.19
SYNE2-201ENST00000341472 CARD11Q9BXL7 1154 aa28.7■■■□□ 2.18
SYNE2-201ENST00000341472 PRDM11Q9NQV5 511 aa28.69■■■□□ 2.18
SYNE2-201ENST00000341472 ATAD2Q6PL18 1390 aa28.69■■■□□ 2.18
SYNE2-201ENST00000341472 PPIP5K1Q6PFW1 1433 aa28.69■■■□□ 2.18
SYNE2-201ENST00000341472 RALGAPBQ86X10 1494 aa28.67■■■□□ 2.18
SYNE2-201ENST00000341472 TRPM3Q9HCF6 1732 aaPredicted RBP28.66■■■□□ 2.18
SYNE2-201ENST00000341472 ONECUT3O60422 494 aaPredicted RBP28.65■■■□□ 2.18
SYNE2-201ENST00000341472 ZC3H6P61129 1189 aaKnown RBP28.65■■■□□ 2.18
SYNE2-201ENST00000341472 SEPT12Q8IYM1 358 aa28.65■■■□□ 2.18
SYNE2-201ENST00000341472 NLRP13Q86W25 1043 aa28.64■■■□□ 2.18
SYNE2-201ENST00000341472 MARF1Q9Y4F3 1742 aaKnown RBP28.63■■■□□ 2.17
SYNE2-201ENST00000341472 TRPM1Q7Z4N2 1603 aa28.61■■■□□ 2.17
SYNE2-201ENST00000341472 CHRNA2Q15822 529 aa28.61■■■□□ 2.17
SYNE2-201ENST00000341472 BRD4O60885 1362 aaPredicted RBP28.61■■■□□ 2.17
SYNE2-201ENST00000341472 KIAA0232Q92628 1395 aa28.61■■■□□ 2.17
SYNE2-201ENST00000341472 ALS2Q96Q42 1657 aa28.61■■■□□ 2.17
SYNE2-201ENST00000341472 ZNF692Q9BU19 519 aaPredicted RBP28.6■■■□□ 2.17
SYNE2-201ENST00000341472 ITSN1Q15811 1721 aa28.6■■■□□ 2.17
SYNE2-201ENST00000341472 CCDC125Q86Z20 511 aa28.58■■■□□ 2.17
SYNE2-201ENST00000341472 A0A0G2JS52 829 aa28.56■■■□□ 2.16
SYNE2-201ENST00000341472 GCP02774 474 aa28.56■■■□□ 2.16
SYNE2-201ENST00000341472 NLRP6P59044 892 aa28.56■■■□□ 2.16
SYNE2-201ENST00000341472 MYT1Q01538 1121 aa28.56■■■□□ 2.16
SYNE2-201ENST00000341472 FAM98CQ17RN3 349 aaKnown RBP28.56■■■□□ 2.16
SYNE2-201ENST00000341472 EVA1CP58658 441 aa28.55■■■□□ 2.16
SYNE2-201ENST00000341472 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.55■■■□□ 2.16
SYNE2-201ENST00000341472 GLI3P10071 1580 aa28.54■■■□□ 2.16
SYNE2-201ENST00000341472 USP19O94966 1318 aa28.54■■■□□ 2.16
SYNE2-201ENST00000341472 SPATA31A5Q5VU36 1347 aa28.54■■■□□ 2.16
SYNE2-201ENST00000341472 SPATA31A7Q8IWB4 1347 aa28.54■■■□□ 2.16
SYNE2-201ENST00000341472 QRICH2Q9H0J4 1663 aa28.54■■■□□ 2.16
SYNE2-201ENST00000341472 KRT27Q7Z3Y8 459 aa28.53■■■□□ 2.16
SYNE2-201ENST00000341472 STRN4Q9NRL3 753 aa28.53■■■□□ 2.16
SYNE2-201ENST00000341472 TOPAZ1Q8N9V7 1692 aa28.53■■■□□ 2.16
SYNE2-201ENST00000341472 USP6P35125 1406 aa28.52■■■□□ 2.16
SYNE2-201ENST00000341472 SBNO2Q9Y2G9 1366 aa28.5■■■□□ 2.15
SYNE2-201ENST00000341472 ABCA3Q99758 1704 aa28.5■■■□□ 2.15
SYNE2-201ENST00000341472 PCGF6Q9BYE7 350 aa28.5■■■□□ 2.15
SYNE2-201ENST00000341472 NWD2Q9ULI1 1742 aa28.49■■■□□ 2.15
SYNE2-201ENST00000341472 TTC21BQ7Z4L5 1316 aa28.49■■■□□ 2.15
SYNE2-201ENST00000341472 COL14A1Q05707 1796 aaKnown RBP28.48■■■□□ 2.15
SYNE2-201ENST00000341472 CPDO75976 1380 aa28.48■■■□□ 2.15
SYNE2-201ENST00000341472 SSH2Q76I76 1423 aa28.47■■■□□ 2.15
SYNE2-201ENST00000341472 TMC1Q8TDI8 760 aa28.47■■■□□ 2.15
SYNE2-201ENST00000341472 SPATA31A1Q5TZJ5 1347 aa28.46■■■□□ 2.15
SYNE2-201ENST00000341472 PLCH1Q4KWH8 1693 aa28.46■■■□□ 2.15
SYNE2-201ENST00000341472 ZBTB7CA1YPR0 619 aa28.45■■■□□ 2.14
SYNE2-201ENST00000341472 ST20-MTHFSA0A0A6YYL1 179 aa28.44■■■□□ 2.14
SYNE2-201ENST00000341472 SLC24A1O60721 1099 aa28.44■■■□□ 2.14
SYNE2-201ENST00000341472 PUS7Q96PZ0 661 aaKnown RBP28.44■■■□□ 2.14
SYNE2-201ENST00000341472 TTC21AQ8NDW8 1320 aa28.43■■■□□ 2.14
SYNE2-201ENST00000341472 KTN1Q86UP2 1357 aaKnown RBP28.43■■■□□ 2.14
SYNE2-201ENST00000341472 USP35Q9P2H5 1018 aa28.43■■■□□ 2.14
SYNE2-201ENST00000341472 SF3B2Q13435 895 aaKnown RBP28.42■■■□□ 2.14
SYNE2-201ENST00000341472 LARP1Q6PKG0 1096 aaKnown RBP28.42■■■□□ 2.14
SYNE2-201ENST00000341472 SLC12A5Q9H2X9 1139 aa28.42■■■□□ 2.14
SYNE2-201ENST00000341472 TIMELESSQ9UNS1 1208 aa28.41■■■□□ 2.14
SYNE2-201ENST00000341472 CPSF1Q10570 1443 aaKnown RBP28.41■■■□□ 2.14
SYNE2-201ENST00000341472 HDGFL2Q7Z4V5 671 aaPredicted RBP28.4■■■□□ 2.14
SYNE2-201ENST00000341472 KCNH5Q8NCM2 988 aa28.4■■■□□ 2.14
SYNE2-201ENST00000341472 TESK2Q96S53 571 aa28.4■■■□□ 2.14
SYNE2-201ENST00000341472 BLMP54132 1417 aaPredicted RBP28.39■■■□□ 2.14
SYNE2-201ENST00000341472 CRYBG1Q9Y4K1 1723 aa28.39■■■□□ 2.14
SYNE2-201ENST00000341472 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.38■■■□□ 2.13
SYNE2-201ENST00000341472 BARGINQ6ZT62 677 aa28.37■■■□□ 2.13
SYNE2-201ENST00000341472 TCP11L2Q8N4U5 519 aa28.37■■■□□ 2.13
SYNE2-201ENST00000341472 TERF2IPQ9NYB0 399 aa28.37■■■□□ 2.13
SYNE2-201ENST00000341472 CLSPNQ9HAW4 1339 aa28.37■■■□□ 2.13
SYNE2-201ENST00000341472 NRAPQ86VF7 1730 aa28.36■■■□□ 2.13
SYNE2-201ENST00000341472 AATKQ6ZMQ8 1374 aa28.36■■■□□ 2.13
SYNE2-201ENST00000341472 CAMTA1Q9Y6Y1 1673 aa28.35■■■□□ 2.13
SYNE2-201ENST00000341472 SOX12O15370 315 aa28.35■■■□□ 2.13
SYNE2-201ENST00000341472 ARHGEF25Q86VW2 580 aa28.35■■■□□ 2.13
SYNE2-201ENST00000341472 PHRF1Q9P1Y6 1649 aaKnown RBP28.35■■■□□ 2.13
SYNE2-201ENST00000341472 FAM182BQ5T319 152 aa28.34■■■□□ 2.13
SYNE2-201ENST00000341472 DEFB132Q7Z7B7 95 aa28.34■■■□□ 2.13
SYNE2-201ENST00000341472 ZRANB1Q9UGI0 708 aa28.33■■■□□ 2.13
SYNE2-201ENST00000341472 THRAP3Q9Y2W1 955 aaKnown RBP28.33■■■□□ 2.13
SYNE2-201ENST00000341472 EP400Q96L91 3159 aa28.33■■■□□ 2.13
SYNE2-201ENST00000341472 NRKQ7Z2Y5 1582 aa28.33■■■□□ 2.12
SYNE2-201ENST00000341472 PDE3BQ13370 1112 aa28.31■■■□□ 2.12
SYNE2-201ENST00000341472 NME9Q86XW9 330 aa28.3■■■□□ 2.12
SYNE2-201ENST00000341472 AXIN2Q9Y2T1 843 aa28.3■■■□□ 2.12
SYNE2-201ENST00000341472 SLIT3O75094 1523 aa28.28■■■□□ 2.12
SYNE2-201ENST00000341472 TMF1P82094 1093 aa28.28■■■□□ 2.12
SYNE2-201ENST00000341472 FAM196AQ6ZSG2 479 aa28.28■■■□□ 2.12
SYNE2-201ENST00000341472 TOM1L2Q6ZVM7 507 aa28.28■■■□□ 2.12
SYNE2-201ENST00000341472 USP31Q70CQ4 1352 aa28.27■■■□□ 2.12
SYNE2-201ENST00000341472 BAG6P46379 1132 aa28.26■■■□□ 2.11
SYNE2-201ENST00000341472 COL5A2P05997 1499 aaPredicted RBP28.26■■■□□ 2.11
SYNE2-201ENST00000341472 CD163L1Q9NR16 1453 aa28.26■■■□□ 2.11
SYNE2-201ENST00000341472 USP47Q96K76 1375 aa28.25■■■□□ 2.11
SYNE2-201ENST00000341472 BRWD3Q6RI45 1802 aa28.25■■■□□ 2.11
SYNE2-201ENST00000341472 CSB-PGBD3P0DP91 1061 aa28.24■■■□□ 2.11
SYNE2-201ENST00000341472 CCER1Q8TC90 406 aaPredicted RBP28.24■■■□□ 2.11
SYNE2-201ENST00000341472 CRB1P82279 1406 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms