RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 NOP2P46087 812 aaKnown RBP4.98□□□□□ -1.61
NEDD4-201ENST00000338963 RAB3GAP1Q15042 981 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 TSPY26PQ9H489 355 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 SH3BP1Q9Y3L3 701 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 MYBBP1AQ9BQG0 1328 aaKnown RBP4.98□□□□□ -1.61
NEDD4-201ENST00000338963 MAPKBP1O60336 1514 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 KIAA1328Q86T90 577 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 CRBNQ96SW2 442 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 MKRN1Q9UHC7 482 aaKnown RBP4.98□□□□□ -1.61
NEDD4-201ENST00000338963 ERC1Q8IUD2 1116 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 STAG1Q8WVM7 1258 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 SPTLC3Q9NUV7 552 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 UHRF1BP1LA0JNW5 1464 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 PDCD2Q16342 344 aaPredicted RBP4.97□□□□□ -1.61
NEDD4-201ENST00000338963 MKL1Q969V6 931 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 USP25Q9UHP3 1055 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 UTP14AQ9BVJ6 771 aaKnown RBP4.97□□□□□ -1.61
NEDD4-201ENST00000338963 CWC22Q9HCG8 908 aaKnown RBP4.97□□□□□ -1.61
NEDD4-201ENST00000338963 MAGEA9P43362 315 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 SEMA3FQ13275 785 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 FOXD1Q16676 465 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 LRSAM1Q6UWE0 723 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 KIF15Q9NS87 1388 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 ZBTB7CA1YPR0 619 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 SPDYE4A6NLX3 237 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 MYO1CO00159 1063 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 NEMFO60524 1076 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 GSCP56915 257 aaPredicted RBP4.97□□□□□ -1.61
NEDD4-201ENST00000338963 FILIP1Q7Z7B0 1213 aa4.97□□□□□ -1.61
NEDD4-201ENST00000338963 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.97□□□□□ -1.61
NEDD4-201ENST00000338963 TRAF1Q13077 416 aa4.96□□□□□ -1.61
NEDD4-201ENST00000338963 MTA1Q13330 715 aa4.96□□□□□ -1.61
NEDD4-201ENST00000338963 SH3GL3Q99963 347 aa4.96□□□□□ -1.61
NEDD4-201ENST00000338963 CTNNA3Q9UI47 895 aa4.96□□□□□ -1.61
NEDD4-201ENST00000338963 ZNF710Q8N1W2 664 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 TNPO1Q92973 898 aaKnown RBP4.96□□□□□ -1.62
NEDD4-201ENST00000338963 C22orf23Q9BZE7 217 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 ACBD3Q9H3P7 528 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC18Q5T9S5 1454 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 MAP3K1Q13233 1512 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 ERICH4A6NGS2 130 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 SMC2O95347 1197 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 HSP90B2PQ58FF3 399 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC191Q8NCU4 936 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 DNAAF4Q8WXU2 420 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 YEATS2Q9ULM3 1422 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 BAG4O95429 457 aaKnown RBP4.96□□□□□ -1.62
NEDD4-201ENST00000338963 CAPN2P17655 700 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 RAD51AP2Q09MP3 1159 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 WWC2Q6AWC2 1192 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 NCOA1Q15788 1441 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 KIF27Q86VH2 1401 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 ZRANB2O95218 330 aaKnown RBP eCLIP4.96□□□□□ -1.62
NEDD4-201ENST00000338963 CPSF2Q9P2I0 782 aaKnown RBP4.96□□□□□ -1.62
NEDD4-201ENST00000338963 BAZ1AQ9NRL2 1556 aaPredicted RBP4.96□□□□□ -1.62
NEDD4-201ENST00000338963 WDR97A6NE52 1622 aa4.96□□□□□ -1.62
NEDD4-201ENST00000338963 KIF18AQ8NI77 898 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 ERO1AQ96HE7 468 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 PANK3Q9H999 370 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 SPATS2LQ9NUQ6 558 aaKnown RBP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 ARHGAP31Q2M1Z3 1444 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 A0A1B0GUA9 196 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 RWDD2BP57060 319 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 IQUBQ8NA54 791 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 PNISRQ8TF01 805 aaKnown RBP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 TEX13AQ9BXU3 409 aaPredicted RBP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 IGSF3O75054 1194 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 U2AF2P26368 475 aaKnown RBP eCLIP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 HNRNPH2P55795 449 aaKnown RBP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 PLCB2Q00722 1185 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 ICA1Q05084 483 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 PSD3Q9NYI0 1048 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 ANKRD18BA2A2Z9 1011 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 NF2P35240 595 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 EFCAB13Q8IY85 973 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 ANKRD23Q86SG2 305 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 NLRP13Q86W25 1043 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 MIPOL1Q8TD10 442 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 DRC1Q96MC2 740 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 MYOM3Q5VTT5 1437 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 ZBTB22O15209 634 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 SGSM2O43147 1006 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 BIRC2Q13490 618 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 PPP2R5AQ15172 486 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 RBBP5Q15291 538 aaKnown RBP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC186Q7Z3E2 898 aa4.95□□□□□ -1.62
NEDD4-201ENST00000338963 LARP6Q9BRS8 491 aaKnown RBP4.95□□□□□ -1.62
NEDD4-201ENST00000338963 LRPPRCP42704 1394 aaKnown RBP4.94□□□□□ -1.62
NEDD4-201ENST00000338963 PDE3AQ14432 1141 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 MYO6Q9UM54 1294 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 MIA2Q96PC5 1412 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 POLA1P09884 1462 aaPredicted RBP4.94□□□□□ -1.62
NEDD4-201ENST00000338963 A0A087WUV0 522 aaPredicted RBP4.94□□□□□ -1.62
NEDD4-201ENST00000338963 POTEDQ86YR6 584 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 KANK1Q14678 1352 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC171Q6TFL3 1326 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 TMCO3Q6UWJ1 677 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 EIF5P55010 431 aaKnown RBP4.94□□□□□ -1.62
NEDD4-201ENST00000338963 ZSCAN23Q3MJ62 389 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms