RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 ANKRD26Q9UPS8 1709 aa19.7■□□□□ 0.74
CBX3-201ENST00000337620 MTHFSP49914 203 aa19.7■□□□□ 0.74
CBX3-201ENST00000337620 ATF3P18847 181 aa19.69■□□□□ 0.74
CBX3-201ENST00000337620 COG3Q96JB2 828 aa19.69■□□□□ 0.74
CBX3-201ENST00000337620 NCOA3Q9Y6Q9 1424 aa19.68■□□□□ 0.74
CBX3-201ENST00000337620 WDR43Q15061 677 aaKnown RBP eCLIP19.68■□□□□ 0.74
CBX3-201ENST00000337620 ORAI2Q96SN7 254 aa19.66■□□□□ 0.74
CBX3-201ENST00000337620 NRKQ7Z2Y5 1582 aa19.66■□□□□ 0.74
CBX3-201ENST00000337620 ADAMTS8Q9UP79 889 aa19.66■□□□□ 0.74
CBX3-201ENST00000337620 CFAP53Q96M91 514 aa19.65■□□□□ 0.74
CBX3-201ENST00000337620 SSH2Q76I76 1423 aa19.65■□□□□ 0.74
CBX3-201ENST00000337620 SENP3-EIF4A1A0A087X0R7 540 aa19.64■□□□□ 0.74
CBX3-201ENST00000337620 FBLN1P23142 703 aa19.64■□□□□ 0.74
CBX3-201ENST00000337620 TTC21AQ8NDW8 1320 aa19.64■□□□□ 0.73
CBX3-201ENST00000337620 MSH6P52701 1360 aa19.64■□□□□ 0.73
CBX3-201ENST00000337620 PAK3O75914 559 aaPredicted RBP19.63■□□□□ 0.73
CBX3-201ENST00000337620 PSME1Q06323 249 aa19.63■□□□□ 0.73
CBX3-201ENST00000337620 CADPS2Q86UW7 1296 aa19.63■□□□□ 0.73
CBX3-201ENST00000337620 LRRC7Q96NW7 1537 aa19.63■□□□□ 0.73
CBX3-201ENST00000337620 C1orf167Q5SNV9 1468 aa19.63■□□□□ 0.73
CBX3-201ENST00000337620 SCAF1Q9H7N4 1312 aaKnown RBP19.62■□□□□ 0.73
CBX3-201ENST00000337620 DCCP43146 1447 aa19.62■□□□□ 0.73
CBX3-201ENST00000337620 PPM1GO15355 546 aaPredicted RBP19.61■□□□□ 0.73
CBX3-201ENST00000337620 FOXO3O43524 673 aa19.61■□□□□ 0.73
CBX3-201ENST00000337620 POLKQ9UBT6 870 aa19.6■□□□□ 0.73
CBX3-201ENST00000337620 XIRP1Q702N8 1843 aaKnown RBP19.6■□□□□ 0.73
CBX3-201ENST00000337620 MST1RQ04912 1400 aa19.59■□□□□ 0.73
CBX3-201ENST00000337620 ZBED9Q6R2W3 1325 aa19.59■□□□□ 0.73
CBX3-201ENST00000337620 ABTB2Q8N961 1025 aa19.58■□□□□ 0.73
CBX3-201ENST00000337620 OVOS2A0A0J9YW53 1432 aa19.58■□□□□ 0.72
CBX3-201ENST00000337620 OVOS2Q6IE36 1432 aa19.58■□□□□ 0.72
CBX3-201ENST00000337620 NLRP6P59044 892 aa19.58■□□□□ 0.72
CBX3-201ENST00000337620 NUTM2GQ5VZR2 741 aa19.58■□□□□ 0.72
CBX3-201ENST00000337620 XPCQ01831 940 aaPredicted RBP19.57■□□□□ 0.72
CBX3-201ENST00000337620 EMILIN1Q9Y6C2 1016 aa19.57■□□□□ 0.72
CBX3-201ENST00000337620 MAP2P11137 1827 aaKnown RBP19.57■□□□□ 0.72
CBX3-201ENST00000337620 INSRP06213 1382 aa19.57■□□□□ 0.72
CBX3-201ENST00000337620 AATKQ6ZMQ8 1374 aa19.57■□□□□ 0.72
CBX3-201ENST00000337620 SOX12O15370 315 aa19.57■□□□□ 0.72
CBX3-201ENST00000337620 RRS1Q15050 365 aaKnown RBP19.57■□□□□ 0.72
CBX3-201ENST00000337620 SALL2Q9Y467 1007 aaPredicted RBP19.56■□□□□ 0.72
CBX3-201ENST00000337620 BLMP54132 1417 aaPredicted RBP19.56■□□□□ 0.72
CBX3-201ENST00000337620 USP31Q70CQ4 1352 aa19.55■□□□□ 0.72
CBX3-201ENST00000337620 PIK3C2AO00443 1686 aa19.55■□□□□ 0.72
CBX3-201ENST00000337620 CCDC146Q8IYE0 955 aa19.54■□□□□ 0.72
CBX3-201ENST00000337620 SHPRHQ149N8 1683 aa19.54■□□□□ 0.72
CBX3-201ENST00000337620 KRT28Q7Z3Y7 464 aa19.54■□□□□ 0.72
CBX3-201ENST00000337620 NUDCQ9Y266 331 aa19.54■□□□□ 0.72
CBX3-201ENST00000337620 DIAPH1O60610 1272 aaKnown RBP19.53■□□□□ 0.72
CBX3-201ENST00000337620 KIF1AQ12756 1690 aa19.53■□□□□ 0.72
CBX3-201ENST00000337620 PNPLA6Q8IY17 1366 aa19.53■□□□□ 0.72
CBX3-201ENST00000337620 U2SURPO15042 1029 aaKnown RBP19.52■□□□□ 0.72
CBX3-201ENST00000337620 U2AF1L5P0DN76 240 aaPredicted RBP19.52■□□□□ 0.72
CBX3-201ENST00000337620 U2AF1Q01081 240 aaKnown RBP eCLIP19.52■□□□□ 0.72
CBX3-201ENST00000337620 COL3A1P02461 1466 aaPredicted RBP19.51■□□□□ 0.71
CBX3-201ENST00000337620 LMOD2Q6P5Q4 547 aa19.51■□□□□ 0.71
CBX3-201ENST00000337620 DDX17Q92841 729 aaKnown RBP19.51■□□□□ 0.71
CBX3-201ENST00000337620 SLAIN2Q9P270 581 aa19.51■□□□□ 0.71
CBX3-201ENST00000337620 SMG6Q86US8 1419 aaKnown RBP19.49■□□□□ 0.71
CBX3-201ENST00000337620 CDK12Q9NYV4 1490 aaPredicted RBP19.48■□□□□ 0.71
CBX3-201ENST00000337620 BRINP3Q76B58 766 aa19.47■□□□□ 0.71
CBX3-201ENST00000337620 NPHP3Q7Z494 1330 aa19.47■□□□□ 0.71
CBX3-201ENST00000337620 APAF1O14727 1248 aa19.46■□□□□ 0.71
CBX3-201ENST00000337620 PLEKHG5O94827 1062 aa19.46■□□□□ 0.71
CBX3-201ENST00000337620 MAP3K19Q56UN5 1328 aa19.46■□□□□ 0.71
CBX3-201ENST00000337620 AEBP2Q6ZN18 517 aaPredicted RBP19.46■□□□□ 0.71
CBX3-201ENST00000337620 RUNDC1Q96C34 613 aa19.45■□□□□ 0.7
CBX3-201ENST00000337620 MARF1Q9Y4F3 1742 aaKnown RBP19.45■□□□□ 0.7
CBX3-201ENST00000337620 AMPHP49418 695 aa19.45■□□□□ 0.7
CBX3-201ENST00000337620 USP54Q70EL1 1684 aa19.44■□□□□ 0.7
CBX3-201ENST00000337620 IL13P35225 146 aa19.44■□□□□ 0.7
CBX3-201ENST00000337620 TRPM3Q9HCF6 1732 aaPredicted RBP19.44■□□□□ 0.7
CBX3-201ENST00000337620 HSP90AB2PQ58FF8 381 aa19.43■□□□□ 0.7
CBX3-201ENST00000337620 KCNH5Q8NCM2 988 aa19.42■□□□□ 0.7
CBX3-201ENST00000337620 SBNO1A3KN83 1393 aa19.41■□□□□ 0.7
CBX3-201ENST00000337620 PEAK1Q9H792 1746 aa19.41■□□□□ 0.7
CBX3-201ENST00000337620 LTBP4Q8N2S1 1624 aa19.41■□□□□ 0.7
CBX3-201ENST00000337620 EIF4A2Q14240 407 aaKnown RBP19.4■□□□□ 0.7
CBX3-201ENST00000337620 TCP11L2Q8N4U5 519 aa19.4■□□□□ 0.7
CBX3-201ENST00000337620 FLT4P35916 1363 aa19.4■□□□□ 0.7
CBX3-201ENST00000337620 GCP02774 474 aa19.39■□□□□ 0.69
CBX3-201ENST00000337620 HMOX1P09601 288 aa19.39■□□□□ 0.69
CBX3-201ENST00000337620 NEUROD2Q15784 382 aa19.39■□□□□ 0.69
CBX3-201ENST00000337620 PNNQ9H307 717 aaKnown RBP19.39■□□□□ 0.69
CBX3-201ENST00000337620 ZBTB7CA1YPR0 619 aa19.39■□□□□ 0.69
CBX3-201ENST00000337620 FCHSD2O94868 740 aa19.39■□□□□ 0.69
CBX3-201ENST00000337620 RRP7AQ9Y3A4 280 aaKnown RBP19.39■□□□□ 0.69
CBX3-201ENST00000337620 PXDNQ92626 1479 aa19.38■□□□□ 0.69
CBX3-201ENST00000337620 PDE3BQ13370 1112 aa19.38■□□□□ 0.69
CBX3-201ENST00000337620 PLEKHF1Q96S99 279 aa19.38■□□□□ 0.69
CBX3-201ENST00000337620 MAPK8IP3Q9UPT6 1336 aa19.37■□□□□ 0.69
CBX3-201ENST00000337620 ALS2Q96Q42 1657 aa19.37■□□□□ 0.69
CBX3-201ENST00000337620 HOXC9P31274 260 aa19.37■□□□□ 0.69
CBX3-201ENST00000337620 USP19O94966 1318 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 TNS3Q68CZ2 1445 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 CDCA7LQ96GN5 454 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 RSPH6AQ9H0K4 717 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 SPATA31A3Q5VYP0 1347 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 NFAT5O94916 1531 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 PRKAR2BP31323 418 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms