RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CDC45O75419 566 aa15.1■□□□□ 0.01
SDC3-201ENST00000336798 NEFHP12036 1026 aa15.1■□□□□ 0.01
SDC3-201ENST00000336798 RBM10P98175 930 aaKnown RBP15.1■□□□□ 0.01
SDC3-201ENST00000336798 DDX54Q8TDD1 881 aaKnown RBP15.1■□□□□ 0.01
SDC3-201ENST00000336798 ACBD3Q9H3P7 528 aa15.1■□□□□ 0.01
SDC3-201ENST00000336798 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.1■□□□□ 0.01
SDC3-201ENST00000336798 PSMA5P28066 241 aa15.1■□□□□ 0.01
SDC3-201ENST00000336798 CAVIN1Q6NZI2 390 aaKnown RBP15.1■□□□□ 0.01
SDC3-201ENST00000336798 NOM1Q5C9Z4 860 aaKnown RBP15.1■□□□□ 0.01
SDC3-201ENST00000336798 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.09■□□□□ 0.01
SDC3-201ENST00000336798 PIBF1Q8WXW3 757 aa15.09■□□□□ 0.01
SDC3-201ENST00000336798 H0YHG0 523 aa15.09■□□□□ 0.01
SDC3-201ENST00000336798 PDCL3Q9H2J4 239 aa15.09■□□□□ 0.01
SDC3-201ENST00000336798 MYL6BP14649 208 aa15.08■□□□□ 0
SDC3-201ENST00000336798 CLASRPQ8N2M8 674 aaKnown RBP15.08■□□□□ 0
SDC3-201ENST00000336798 FIBPO43427 364 aa15.07■□□□□ 0
SDC3-201ENST00000336798 RAPGEF2Q9Y4G8 1499 aa15.07■□□□□ 0
SDC3-201ENST00000336798 NASPP49321 788 aaPredicted RBP15.07■□□□□ 0
SDC3-201ENST00000336798 TANGO6Q9C0B7 1094 aa15.07■□□□□ 0
SDC3-201ENST00000336798 PRPF40AO75400 957 aaKnown RBP15.07■□□□□ 0
SDC3-201ENST00000336798 NUP133Q8WUM0 1156 aa15.07■□□□□ 0
SDC3-201ENST00000336798 NEK4P51957 841 aa15.07■□□□□ 0
SDC3-201ENST00000336798 SLC3A2P08195 630 aaKnown RBP15.06■□□□□ 0
SDC3-201ENST00000336798 ZMYND15Q9H091 742 aa15.06■□□□□ 0
SDC3-201ENST00000336798 KINO60870 393 aaKnown RBP15.06■□□□□ 0
SDC3-201ENST00000336798 CCDC30Q5VVM6 783 aa15.06■□□□□ 0
SDC3-201ENST00000336798 AXDND1Q5T1B0 1012 aaPredicted RBP15.05■□□□□ 0
SDC3-201ENST00000336798 SEPT11Q9NVA2 429 aaKnown RBP15.05■□□□□ 0
SDC3-201ENST00000336798 PTPRGP23470 1445 aa15.05■□□□□ 0
SDC3-201ENST00000336798 FAM177A1Q8N128 213 aaPredicted RBP15.05■□□□□ 0
SDC3-201ENST00000336798 RDXP35241 583 aaKnown RBP15.05■□□□□ -0
SDC3-201ENST00000336798 TXLNAP40222 546 aa15.05■□□□□ -0
SDC3-201ENST00000336798 SF3B2Q13435 895 aaKnown RBP15.05■□□□□ -0
SDC3-201ENST00000336798 BICDL1Q6ZP65 573 aa15.05■□□□□ -0
SDC3-201ENST00000336798 MTHFSP49914 203 aa15.05■□□□□ -0
SDC3-201ENST00000336798 CHMP4BP1P59074 171 aa15.05■□□□□ -0
SDC3-201ENST00000336798 STK38Q15208 465 aa15.05■□□□□ -0
SDC3-201ENST00000336798 FILIP1LQ4L180 1135 aa15.05■□□□□ -0
SDC3-201ENST00000336798 MATR3P43243 847 aaKnown RBP eCLIP15.04■□□□□ -0
SDC3-201ENST00000336798 PIP4K2BP78356 416 aa15.04■□□□□ -0
SDC3-201ENST00000336798 CCDC158Q5M9N0 1113 aa15.04■□□□□ -0
SDC3-201ENST00000336798 RRP9O43818 475 aaKnown RBP15.04■□□□□ -0
SDC3-201ENST00000336798 CCDC39Q9UFE4 941 aa15.04■□□□□ -0
SDC3-201ENST00000336798 DHX57Q6P158 1386 aaKnown RBP15.04■□□□□ -0
SDC3-201ENST00000336798 ZSCAN29Q8IWY8 852 aaPredicted RBP15.03■□□□□ -0
SDC3-201ENST00000336798 SMARCE1Q969G3 411 aa15.03■□□□□ -0
SDC3-201ENST00000336798 CCDC85AQ96PX6 553 aaPredicted RBP15.03■□□□□ -0
SDC3-201ENST00000336798 CCDC191Q8NCU4 936 aa15.03■□□□□ -0
SDC3-201ENST00000336798 TSPYL1Q9H0U9 437 aa15.03■□□□□ -0
SDC3-201ENST00000336798 AEBP1Q8IUX7 1158 aa15.03■□□□□ -0
SDC3-201ENST00000336798 SMARCA2P51531 1590 aa15.03■□□□□ -0
SDC3-201ENST00000336798 SERPINC1P01008 464 aa15.03■□□□□ -0
SDC3-201ENST00000336798 SSBP05455 408 aaKnown RBP eCLIP15.03■□□□□ -0
SDC3-201ENST00000336798 DCTN1Q14203 1278 aa15.03■□□□□ -0
SDC3-201ENST00000336798 PRKAR2BP31323 418 aa15.02■□□□□ -0
SDC3-201ENST00000336798 NFKBIBQ15653 356 aa15.02■□□□□ -0
SDC3-201ENST00000336798 MYO6Q9UM54 1294 aa15.02■□□□□ -0
SDC3-201ENST00000336798 ADAMTS8Q9UP79 889 aa15.02■□□□□ -0
SDC3-201ENST00000336798 CABP4P57796 275 aa15.02■□□□□ -0
SDC3-201ENST00000336798 TSR2Q969E8 191 aaKnown RBP15.02■□□□□ -0
SDC3-201ENST00000336798 CENPHQ9H3R5 247 aa15.02■□□□□ -0
SDC3-201ENST00000336798 FKBP4Q02790 459 aaKnown RBP eCLIP15.02□□□□□ -0.01
SDC3-201ENST00000336798 PROSER2Q86WR7 435 aaPredicted RBP15.02□□□□□ -0.01
SDC3-201ENST00000336798 ZNF644Q9H582 1327 aaPredicted RBP15.02□□□□□ -0.01
SDC3-201ENST00000336798 TSPY26PQ9H489 355 aa15.02□□□□□ -0.01
SDC3-201ENST00000336798 EXOSC9Q06265 439 aaKnown RBP15.01□□□□□ -0.01
SDC3-201ENST00000336798 TOM1L2Q6ZVM7 507 aa15.01□□□□□ -0.01
SDC3-201ENST00000336798 CDCA7LQ96GN5 454 aa15.01□□□□□ -0.01
SDC3-201ENST00000336798 DEF6Q9H4E7 631 aa15.01□□□□□ -0.01
SDC3-201ENST00000336798 CCDC69A6NI79 296 aa15.01□□□□□ -0.01
SDC3-201ENST00000336798 CCDC66A2RUB6 948 aa15.01□□□□□ -0.01
SDC3-201ENST00000336798 NOB1Q9ULX3 412 aaKnown RBP15.01□□□□□ -0.01
SDC3-201ENST00000336798 ENOX2Q16206 610 aaKnown RBP15.01□□□□□ -0.01
SDC3-201ENST00000336798 PLEKHO1Q53GL0 409 aaPredicted RBP15.01□□□□□ -0.01
SDC3-201ENST00000336798 GPRASP1Q5JY77 1395 aa15.01□□□□□ -0.01
SDC3-201ENST00000336798 MROH2BQ7Z745 1585 aa15.01□□□□□ -0.01
SDC3-201ENST00000336798 SEPT7Q16181 437 aaKnown RBP15□□□□□ -0.01
SDC3-201ENST00000336798 GNL3LQ9NVN8 582 aaKnown RBP15□□□□□ -0.01
SDC3-201ENST00000336798 MPHOSPH10O00566 681 aaKnown RBP15□□□□□ -0.01
SDC3-201ENST00000336798 SLC4A2P04920 1241 aa15□□□□□ -0.01
SDC3-201ENST00000336798 FAM193AP78312 1265 aa15□□□□□ -0.01
SDC3-201ENST00000336798 TXNDC2Q86VQ3 553 aa15□□□□□ -0.01
SDC3-201ENST00000336798 MTERF4Q7Z6M4 381 aaKnown RBP15□□□□□ -0.01
SDC3-201ENST00000336798 TAX1BP1Q86VP1 789 aa14.99□□□□□ -0.01
SDC3-201ENST00000336798 MIA2Q96PC5 1412 aa14.99□□□□□ -0.01
SDC3-201ENST00000336798 XPCQ01831 940 aaPredicted RBP14.99□□□□□ -0.01
SDC3-201ENST00000336798 TWISTNBQ3B726 338 aaPredicted RBP14.99□□□□□ -0.01
SDC3-201ENST00000336798 CCDC97Q96F63 343 aaPredicted RBP14.99□□□□□ -0.01
SDC3-201ENST00000336798 TRAK2O60296 914 aa14.99□□□□□ -0.01
SDC3-201ENST00000336798 ZNF396Q96N95 335 aaPredicted RBP14.99□□□□□ -0.01
SDC3-201ENST00000336798 GNAI3P08754 354 aa14.99□□□□□ -0.01
SDC3-201ENST00000336798 TCP11L2Q8N4U5 519 aa14.99□□□□□ -0.01
SDC3-201ENST00000336798 ERCC4Q92889 916 aaPredicted RBP14.99□□□□□ -0.01
SDC3-201ENST00000336798 TATP17735 454 aaPredicted RBP14.98□□□□□ -0.01
SDC3-201ENST00000336798 USP5P45974 858 aa14.98□□□□□ -0.01
SDC3-201ENST00000336798 ME1P48163 572 aa14.98□□□□□ -0.01
SDC3-201ENST00000336798 PDZRN3Q9UPQ7 1066 aa14.98□□□□□ -0.01
SDC3-201ENST00000336798 HSP90AB3PQ58FF7 597 aa14.98□□□□□ -0.01
SDC3-201ENST00000336798 PRDM2Q13029 1718 aa14.98□□□□□ -0.01
SDC3-201ENST00000336798 WASHC2AQ641Q2 1341 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms