RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CRYBG1Q9Y4K1 1723 aa28.09■■■□□ 2.09
LIME1-201ENST00000309546 SRPK2P78362 688 aaKnown RBP28.05■■■□□ 2.08
LIME1-201ENST00000309546 CCDC9Q9Y3X0 531 aaKnown RBP28.05■■■□□ 2.08
LIME1-201ENST00000309546 CCDC61Q9Y6R9 512 aa28.05■■■□□ 2.08
LIME1-201ENST00000309546 COL14A1Q05707 1796 aaKnown RBP28.04■■■□□ 2.08
LIME1-201ENST00000309546 FAM83GA6ND36 823 aa28.04■■■□□ 2.08
LIME1-201ENST00000309546 NRAPQ86VF7 1730 aa28.04■■■□□ 2.08
LIME1-201ENST00000309546 POLR3AO14802 1390 aaPredicted RBP28.02■■■□□ 2.08
LIME1-201ENST00000309546 ACEP12821 1306 aa28.02■■■□□ 2.08
LIME1-201ENST00000309546 VPS72Q15906 364 aa28.02■■■□□ 2.08
LIME1-201ENST00000309546 PHRF1Q9P1Y6 1649 aaKnown RBP28.02■■■□□ 2.08
LIME1-201ENST00000309546 ROCK2O75116 1388 aaKnown RBP28.01■■■□□ 2.07
LIME1-201ENST00000309546 BRWD3Q6RI45 1802 aa28■■■□□ 2.07
LIME1-201ENST00000309546 CABP2Q9NPB3 220 aa28■■■□□ 2.07
LIME1-201ENST00000309546 PPIP5K1Q6PFW1 1433 aa28■■■□□ 2.07
LIME1-201ENST00000309546 NBPF8Q3BBV2 869 aa27.99■■■□□ 2.07
LIME1-201ENST00000309546 PLEKHG3A1L390 1219 aa27.98■■■□□ 2.07
LIME1-201ENST00000309546 NUTM2GQ5VZR2 741 aa27.98■■■□□ 2.07
LIME1-201ENST00000309546 BTG4Q9NY30 223 aa27.98■■■□□ 2.07
LIME1-201ENST00000309546 PRDM11Q9NQV5 511 aa27.95■■■□□ 2.06
LIME1-201ENST00000309546 SEPT12Q8IYM1 358 aa27.94■■■□□ 2.06
LIME1-201ENST00000309546 KIAA0232Q92628 1395 aa27.92■■■□□ 2.06
LIME1-201ENST00000309546 A0A0G2JS52 829 aa27.92■■■□□ 2.06
LIME1-201ENST00000309546 MYT1Q01538 1121 aa27.92■■■□□ 2.06
LIME1-201ENST00000309546 ABTB2Q8N961 1025 aa27.91■■■□□ 2.06
LIME1-201ENST00000309546 EVC2Q86UK5 1308 aa27.91■■■□□ 2.06
LIME1-201ENST00000309546 NRKQ7Z2Y5 1582 aa27.9■■■□□ 2.06
LIME1-201ENST00000309546 EP400Q96L91 3159 aa27.89■■■□□ 2.06
LIME1-201ENST00000309546 TONSLQ96HA7 1378 aa27.89■■■□□ 2.06
LIME1-201ENST00000309546 TRIM26Q12899 539 aaPredicted RBP27.89■■■□□ 2.06
LIME1-201ENST00000309546 ZC3H6P61129 1189 aaKnown RBP27.88■■■□□ 2.05
LIME1-201ENST00000309546 CHRNA2Q15822 529 aa27.88■■■□□ 2.05
LIME1-201ENST00000309546 FAM98CQ17RN3 349 aaKnown RBP27.87■■■□□ 2.05
LIME1-201ENST00000309546 CABP1Q9NZU7 370 aa27.87■■■□□ 2.05
LIME1-201ENST00000309546 USP6P35125 1406 aa27.84■■■□□ 2.05
LIME1-201ENST00000309546 ONECUT3O60422 494 aaPredicted RBP27.84■■■□□ 2.05
LIME1-201ENST00000309546 KRT27Q7Z3Y8 459 aa27.84■■■□□ 2.05
LIME1-201ENST00000309546 CCDC125Q86Z20 511 aa27.83■■■□□ 2.05
LIME1-201ENST00000309546 STRN4Q9NRL3 753 aa27.83■■■□□ 2.05
LIME1-201ENST00000309546 SPATA31A5Q5VU36 1347 aa27.83■■■□□ 2.05
LIME1-201ENST00000309546 SPATA31A7Q8IWB4 1347 aa27.83■■■□□ 2.05
LIME1-201ENST00000309546 NLRP13Q86W25 1043 aa27.82■■■□□ 2.04
LIME1-201ENST00000309546 USP19O94966 1318 aa27.82■■■□□ 2.04
LIME1-201ENST00000309546 CARD11Q9BXL7 1154 aa27.81■■■□□ 2.04
LIME1-201ENST00000309546 BRD4O60885 1362 aaPredicted RBP27.81■■■□□ 2.04
LIME1-201ENST00000309546 BLMP54132 1417 aaPredicted RBP27.81■■■□□ 2.04
LIME1-201ENST00000309546 AKAP12Q02952 1782 aa27.79■■■□□ 2.04
LIME1-201ENST00000309546 PIK3C2AO00443 1686 aa27.78■■■□□ 2.04
LIME1-201ENST00000309546 THSD7AQ9UPZ6 1657 aa27.78■■■□□ 2.04
LIME1-201ENST00000309546 LMO7Q8WWI1 1683 aa27.77■■■□□ 2.04
LIME1-201ENST00000309546 CPDO75976 1380 aa27.75■■■□□ 2.03
LIME1-201ENST00000309546 SPATA31A1Q5TZJ5 1347 aa27.75■■■□□ 2.03
LIME1-201ENST00000309546 GCP02774 474 aa27.75■■■□□ 2.03
LIME1-201ENST00000309546 EVA1CP58658 441 aa27.75■■■□□ 2.03
LIME1-201ENST00000309546 NLRP6P59044 892 aa27.75■■■□□ 2.03
LIME1-201ENST00000309546 SF3B2Q13435 895 aaKnown RBP27.75■■■□□ 2.03
LIME1-201ENST00000309546 SSH2Q76I76 1423 aa27.75■■■□□ 2.03
LIME1-201ENST00000309546 CAMTA1Q9Y6Y1 1673 aa27.75■■■□□ 2.03
LIME1-201ENST00000309546 ZBTB7CA1YPR0 619 aa27.74■■■□□ 2.03
LIME1-201ENST00000309546 USP35Q9P2H5 1018 aa27.73■■■□□ 2.03
LIME1-201ENST00000309546 SBNO2Q9Y2G9 1366 aa27.73■■■□□ 2.03
LIME1-201ENST00000309546 SLIT3O75094 1523 aa27.72■■■□□ 2.03
LIME1-201ENST00000309546 DEFB132Q7Z7B7 95 aa27.71■■■□□ 2.03
LIME1-201ENST00000309546 FAM182BQ5T319 152 aa27.69■■■□□ 2.02
LIME1-201ENST00000309546 ZNF692Q9BU19 519 aaPredicted RBP27.69■■■□□ 2.02
LIME1-201ENST00000309546 ZRANB1Q9UGI0 708 aa27.69■■■□□ 2.02
LIME1-201ENST00000309546 MON2Q7Z3U7 1717 aa27.69■■■□□ 2.02
LIME1-201ENST00000309546 LARP1Q6PKG0 1096 aaKnown RBP27.68■■■□□ 2.02
LIME1-201ENST00000309546 TTC21BQ7Z4L5 1316 aa27.67■■■□□ 2.02
LIME1-201ENST00000309546 KTN1Q86UP2 1357 aaKnown RBP27.67■■■□□ 2.02
LIME1-201ENST00000309546 RGPD1P0DJD0 1748 aa27.67■■■□□ 2.02
LIME1-201ENST00000309546 CPSF1Q10570 1443 aaKnown RBP27.67■■■□□ 2.02
LIME1-201ENST00000309546 COL5A2P05997 1499 aaPredicted RBP27.66■■■□□ 2.02
LIME1-201ENST00000309546 TTC21AQ8NDW8 1320 aa27.64■■■□□ 2.01
LIME1-201ENST00000309546 SOX12O15370 315 aa27.63■■■□□ 2.01
LIME1-201ENST00000309546 TMC1Q8TDI8 760 aa27.63■■■□□ 2.01
LIME1-201ENST00000309546 BARGINQ6ZT62 677 aa27.61■■■□□ 2.01
LIME1-201ENST00000309546 TCP11L2Q8N4U5 519 aa27.61■■■□□ 2.01
LIME1-201ENST00000309546 AATKQ6ZMQ8 1374 aa27.6■■■□□ 2.01
LIME1-201ENST00000309546 COL18A1P39060 1754 aa27.6■■■□□ 2.01
LIME1-201ENST00000309546 BAG6P46379 1132 aa27.6■■■□□ 2.01
LIME1-201ENST00000309546 TNS1Q9HBL0 1735 aaKnown RBP27.59■■■□□ 2.01
LIME1-201ENST00000309546 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.59■■■□□ 2.01
LIME1-201ENST00000309546 CRB1P82279 1406 aa27.58■■■□□ 2.01
LIME1-201ENST00000309546 CD163L1Q9NR16 1453 aa27.58■■■□□ 2.01
LIME1-201ENST00000309546 RGPD5Q99666 1765 aa27.58■■■□□ 2.01
LIME1-201ENST00000309546 KCNH5Q8NCM2 988 aa27.58■■■□□ 2.01
LIME1-201ENST00000309546 PDE3BQ13370 1112 aa27.56■■■□□ 2
LIME1-201ENST00000309546 HDGFL2Q7Z4V5 671 aaPredicted RBP27.56■■■□□ 2
LIME1-201ENST00000309546 THRAP3Q9Y2W1 955 aaKnown RBP27.56■■■□□ 2
LIME1-201ENST00000309546 PARP4Q9UKK3 1724 aaKnown RBP27.55■■■□□ 2
LIME1-201ENST00000309546 SLC12A5Q9H2X9 1139 aa27.55■■■□□ 2
LIME1-201ENST00000309546 NFAT5O94916 1531 aa27.55■■■□□ 2
LIME1-201ENST00000309546 ST20-MTHFSA0A0A6YYL1 179 aa27.54■■■□□ 2
LIME1-201ENST00000309546 FAM196AQ6ZSG2 479 aa27.54■■■□□ 2
LIME1-201ENST00000309546 TOM1L2Q6ZVM7 507 aa27.53■■■□□ 2
LIME1-201ENST00000309546 ARHGEF25Q86VW2 580 aa27.53■■■□□ 2
LIME1-201ENST00000309546 WNK3Q9BYP7 1800 aa27.53■■■□□ 2
LIME1-201ENST00000309546 USP54Q70EL1 1684 aa27.52■■■□□ 2
LIME1-201ENST00000309546 EN1Q05925 392 aaPredicted RBP27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms