RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 CABP2Q9NPB3 220 aa11.4□□□□□ -0.58
CHD6-201ENST00000309279 ITSN1Q15811 1721 aa11.4□□□□□ -0.59
CHD6-201ENST00000309279 TOPAZ1Q8N9V7 1692 aa11.4□□□□□ -0.59
CHD6-201ENST00000309279 NECTIN2Q92692 538 aa11.39□□□□□ -0.59
CHD6-201ENST00000309279 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
CHD6-201ENST00000309279 PLEKHG3A1L390 1219 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 TMF1P82094 1093 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 PKNOX2Q96KN3 472 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 PHF8Q9UPP1 1060 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 KIF1AQ12756 1690 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 NHSL1Q5SYE7 1610 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 AHDC1Q5TGY3 1603 aaPredicted RBP11.38□□□□□ -0.59
CHD6-201ENST00000309279 ATAD2Q6PL18 1390 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 DISP3Q9P2K9 1392 aa11.38□□□□□ -0.59
CHD6-201ENST00000309279 CDCA8Q53HL2 280 aa11.37□□□□□ -0.59
CHD6-201ENST00000309279 FOXO3O43524 673 aa11.36□□□□□ -0.59
CHD6-201ENST00000309279 PPIP5K1Q6PFW1 1433 aa11.36□□□□□ -0.59
CHD6-201ENST00000309279 POLR3AO14802 1390 aaPredicted RBP11.36□□□□□ -0.59
CHD6-201ENST00000309279 SOS2Q07890 1332 aaPredicted RBP11.36□□□□□ -0.59
CHD6-201ENST00000309279 NPHP3Q7Z494 1330 aa11.36□□□□□ -0.59
CHD6-201ENST00000309279 PMFBP1Q8TBY8 1022 aa11.35□□□□□ -0.59
CHD6-201ENST00000309279 CABP1Q9NZU7 370 aa11.35□□□□□ -0.59
CHD6-201ENST00000309279 PHLPP1O60346 1717 aa11.35□□□□□ -0.59
CHD6-201ENST00000309279 COL16A1Q07092 1604 aaPredicted RBP11.35□□□□□ -0.59
CHD6-201ENST00000309279 HSPA1LP34931 641 aa11.35□□□□□ -0.59
CHD6-201ENST00000309279 ILDR1Q86SU0 546 aaPredicted RBP11.35□□□□□ -0.59
CHD6-201ENST00000309279 DDX17Q92841 729 aaKnown RBP11.35□□□□□ -0.59
CHD6-201ENST00000309279 PXDNQ92626 1479 aa11.34□□□□□ -0.59
CHD6-201ENST00000309279 NINLQ9Y2I6 1382 aa11.34□□□□□ -0.59
CHD6-201ENST00000309279 ACEP12821 1306 aa11.33□□□□□ -0.6
CHD6-201ENST00000309279 C11orf95C9JLR9 678 aaPredicted RBP11.33□□□□□ -0.6
CHD6-201ENST00000309279 NGDNQ8NEJ9 315 aaKnown RBP11.33□□□□□ -0.6
CHD6-201ENST00000309279 BCL11BQ9C0K0 894 aaPredicted RBP11.33□□□□□ -0.6
CHD6-201ENST00000309279 CPSF1Q10570 1443 aaKnown RBP11.32□□□□□ -0.6
CHD6-201ENST00000309279 PSME1Q06323 249 aa11.32□□□□□ -0.6
CHD6-201ENST00000309279 KRT28Q7Z3Y7 464 aa11.32□□□□□ -0.6
CHD6-201ENST00000309279 LRRC59Q96AG4 307 aaKnown RBP11.32□□□□□ -0.6
CHD6-201ENST00000309279 ARID3AQ99856 593 aa11.32□□□□□ -0.6
CHD6-201ENST00000309279 SLC12A5Q9H2X9 1139 aa11.32□□□□□ -0.6
CHD6-201ENST00000309279 ZNF692Q9BU19 519 aaPredicted RBP11.31□□□□□ -0.6
CHD6-201ENST00000309279 BCCIPQ9P287 314 aaKnown RBP eCLIP11.31□□□□□ -0.6
CHD6-201ENST00000309279 CD163L1Q9NR16 1453 aa11.31□□□□□ -0.6
CHD6-201ENST00000309279 AKAP12Q02952 1782 aa11.31□□□□□ -0.6
CHD6-201ENST00000309279 TRPM3Q9HCF6 1732 aaPredicted RBP11.31□□□□□ -0.6
CHD6-201ENST00000309279 TMC1Q8TDI8 760 aa11.31□□□□□ -0.6
CHD6-201ENST00000309279 SBNO1A3KN83 1393 aa11.31□□□□□ -0.6
CHD6-201ENST00000309279 MYOM1P52179 1685 aa11.3□□□□□ -0.6
CHD6-201ENST00000309279 BRD4O60885 1362 aaPredicted RBP11.3□□□□□ -0.6
CHD6-201ENST00000309279 XPCQ01831 940 aaPredicted RBP11.3□□□□□ -0.6
CHD6-201ENST00000309279 POLR3GLQ9BT43 218 aa11.3□□□□□ -0.6
CHD6-201ENST00000309279 SSH2Q76I76 1423 aa11.3□□□□□ -0.6
CHD6-201ENST00000309279 KIF7Q2M1P5 1343 aa11.29□□□□□ -0.6
CHD6-201ENST00000309279 SPATA31A3Q5VYP0 1347 aa11.29□□□□□ -0.6
CHD6-201ENST00000309279 TERF2IPQ9NYB0 399 aa11.29□□□□□ -0.6
CHD6-201ENST00000309279 USP6P35125 1406 aa11.29□□□□□ -0.6
CHD6-201ENST00000309279 MON2Q7Z3U7 1717 aa11.29□□□□□ -0.6
CHD6-201ENST00000309279 A0A1W2PP64 1363 aa11.28□□□□□ -0.6
CHD6-201ENST00000309279 ANKRD36BQ8N2N9 1353 aa11.28□□□□□ -0.6
CHD6-201ENST00000309279 JCADQ9P266 1359 aa11.28□□□□□ -0.6
CHD6-201ENST00000309279 SHPRHQ149N8 1683 aa11.28□□□□□ -0.6
CHD6-201ENST00000309279 ALS2Q96Q42 1657 aa11.28□□□□□ -0.6
CHD6-201ENST00000309279 BRPF1P55201 1214 aaPredicted RBP11.27□□□□□ -0.6
CHD6-201ENST00000309279 HDGFL2Q7Z4V5 671 aaPredicted RBP11.27□□□□□ -0.6
CHD6-201ENST00000309279 TNS3Q68CZ2 1445 aa11.27□□□□□ -0.6
CHD6-201ENST00000309279 WASHC2AQ641Q2 1341 aa11.27□□□□□ -0.6
CHD6-201ENST00000309279 KTN1Q86UP2 1357 aaKnown RBP11.27□□□□□ -0.61
CHD6-201ENST00000309279 FGD1P98174 961 aa11.27□□□□□ -0.61
CHD6-201ENST00000309279 PNPLA6Q8IY17 1366 aa11.26□□□□□ -0.61
CHD6-201ENST00000309279 CCDC7Q96M83 1385 aa11.26□□□□□ -0.61
CHD6-201ENST00000309279 NRKQ7Z2Y5 1582 aa11.26□□□□□ -0.61
CHD6-201ENST00000309279 COL22A1Q8NFW1 1626 aaPredicted RBP11.26□□□□□ -0.61
CHD6-201ENST00000309279 ARHGEF10O15013 1369 aa11.26□□□□□ -0.61
CHD6-201ENST00000309279 EDC4Q6P2E9 1401 aaKnown RBP11.25□□□□□ -0.61
CHD6-201ENST00000309279 TTC21BQ7Z4L5 1316 aa11.25□□□□□ -0.61
CHD6-201ENST00000309279 TTC21AQ8NDW8 1320 aa11.25□□□□□ -0.61
CHD6-201ENST00000309279 PAK3O75914 559 aaPredicted RBP11.24□□□□□ -0.61
CHD6-201ENST00000309279 CARD14Q9BXL6 1004 aa11.24□□□□□ -0.61
CHD6-201ENST00000309279 ZMYND15Q9H091 742 aa11.24□□□□□ -0.61
CHD6-201ENST00000309279 RSPH6AQ9H0K4 717 aa11.24□□□□□ -0.61
CHD6-201ENST00000309279 SPATA31A6Q5VVP1 1343 aa11.24□□□□□ -0.61
CHD6-201ENST00000309279 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.24□□□□□ -0.61
CHD6-201ENST00000309279 C1orf115Q9H7X2 142 aa11.24□□□□□ -0.61
CHD6-201ENST00000309279 ABTB2Q8N961 1025 aa11.23□□□□□ -0.61
CHD6-201ENST00000309279 PIK3C2AO00443 1686 aa11.22□□□□□ -0.61
CHD6-201ENST00000309279 PANK3Q9H999 370 aa11.22□□□□□ -0.61
CHD6-201ENST00000309279 MED1Q15648 1581 aaPredicted RBP11.22□□□□□ -0.61
CHD6-201ENST00000309279 CRYBG1Q9Y4K1 1723 aa11.22□□□□□ -0.61
CHD6-201ENST00000309279 LMOD2Q6P5Q4 547 aa11.21□□□□□ -0.61
CHD6-201ENST00000309279 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.21□□□□□ -0.615e-7■■■■□ 20.8
CHD6-201ENST00000309279 USP31Q70CQ4 1352 aa11.21□□□□□ -0.61
CHD6-201ENST00000309279 USP54Q70EL1 1684 aa11.21□□□□□ -0.61
CHD6-201ENST00000309279 NLRP13Q86W25 1043 aa11.2□□□□□ -0.62
CHD6-201ENST00000309279 MARF1Q9Y4F3 1742 aaKnown RBP11.2□□□□□ -0.62
CHD6-201ENST00000309279 NSD3Q9BZ95 1437 aa11.2□□□□□ -0.62
CHD6-201ENST00000309279 USP19O94966 1318 aa11.2□□□□□ -0.62
CHD6-201ENST00000309279 FYB1O15117 783 aa11.2□□□□□ -0.62
CHD6-201ENST00000309279 PER1O15534 1290 aaPredicted RBP11.2□□□□□ -0.62
CHD6-201ENST00000309279 NLRP6P59044 892 aa11.2□□□□□ -0.62
CHD6-201ENST00000309279 SPRYD3Q8NCJ5 442 aa11.2□□□□□ -0.62
CHD6-201ENST00000309279 ABCA3Q99758 1704 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms