RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 PPP2R1AP30153 589 aa13.9□□□□□ -0.18
LSM3-201ENST00000306024 NPHP4O75161 1426 aaPredicted RBP13.9□□□□□ -0.19
LSM3-201ENST00000306024 GOLGA6L3A6NEY3 463 aa13.89□□□□□ -0.19
LSM3-201ENST00000306024 PLIN1O60240 522 aa13.89□□□□□ -0.19
LSM3-201ENST00000306024 U2AF1L5P0DN76 240 aaPredicted RBP13.89□□□□□ -0.19
LSM3-201ENST00000306024 U2AF1Q01081 240 aaKnown RBP eCLIP13.89□□□□□ -0.19
LSM3-201ENST00000306024 SKAP1Q86WV1 359 aa13.89□□□□□ -0.19
LSM3-201ENST00000306024 NRXN1Q9ULB1 1477 aa13.89□□□□□ -0.19
LSM3-201ENST00000306024 ROBO2Q9HCK4 1378 aa13.89□□□□□ -0.19
LSM3-201ENST00000306024 KDM4FA0A1W2PPD8 638 aa13.89□□□□□ -0.19
LSM3-201ENST00000306024 PUS7Q96PZ0 661 aaKnown RBP13.89□□□□□ -0.19
LSM3-201ENST00000306024 PPLO60437 1756 aa13.88□□□□□ -0.19
LSM3-201ENST00000306024 PER1O15534 1290 aaPredicted RBP13.88□□□□□ -0.19
LSM3-201ENST00000306024 CARD14Q9BXL6 1004 aa13.88□□□□□ -0.19
LSM3-201ENST00000306024 SIRT1Q96EB6 747 aa13.88□□□□□ -0.19
LSM3-201ENST00000306024 DMRT2Q9Y5R5 561 aa13.88□□□□□ -0.19
LSM3-201ENST00000306024 C3P01024 1663 aa13.87□□□□□ -0.19
LSM3-201ENST00000306024 NLRP6P59044 892 aa13.87□□□□□ -0.19
LSM3-201ENST00000306024 MYO5BQ9ULV0 1848 aa13.87□□□□□ -0.19
LSM3-201ENST00000306024 MTHFSP49914 203 aa13.87□□□□□ -0.19
LSM3-201ENST00000306024 CEP170BQ9Y4F5 1589 aaPredicted RBP13.86□□□□□ -0.19
LSM3-201ENST00000306024 XPCQ01831 940 aaPredicted RBP13.86□□□□□ -0.19
LSM3-201ENST00000306024 AMER1Q5JTC6 1135 aaPredicted RBP13.86□□□□□ -0.19
LSM3-201ENST00000306024 PHF8Q9UPP1 1060 aa13.86□□□□□ -0.19
LSM3-201ENST00000306024 FAM161AQ3B820 660 aa13.86□□□□□ -0.19
LSM3-201ENST00000306024 ABTB2Q8N961 1025 aa13.86□□□□□ -0.19
LSM3-201ENST00000306024 ACEP12821 1306 aa13.86□□□□□ -0.19
LSM3-201ENST00000306024 BRD4O60885 1362 aaPredicted RBP13.85□□□□□ -0.19
LSM3-201ENST00000306024 ANKRD36BQ8N2N9 1353 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 NINLQ9Y2I6 1382 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 MAPK8IP3Q9UPT6 1336 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 ANP32BQ92688 251 aaKnown RBP13.85□□□□□ -0.19
LSM3-201ENST00000306024 SETBP1Q9Y6X0 1596 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 PPIP5K1Q6PFW1 1433 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 AMPHP49418 695 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 NME9Q86XW9 330 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 CCDC146Q8IYE0 955 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 FOXO3O43524 673 aa13.85□□□□□ -0.19
LSM3-201ENST00000306024 CRBNQ96SW2 442 aa13.84□□□□□ -0.19
LSM3-201ENST00000306024 ADAMTS13Q76LX8 1427 aa13.84□□□□□ -0.19
LSM3-201ENST00000306024 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.84□□□□□ -0.19
LSM3-201ENST00000306024 SPRYD3Q8NCJ5 442 aa13.83□□□□□ -0.19
LSM3-201ENST00000306024 A0A1W2PP64 1363 aa13.83□□□□□ -0.2
LSM3-201ENST00000306024 CANXP27824 592 aaKnown RBP13.83□□□□□ -0.2
LSM3-201ENST00000306024 C19orf44Q9H6X5 657 aa13.82□□□□□ -0.2
LSM3-201ENST00000306024 RRAGDQ9NQL2 400 aaPredicted RBP13.82□□□□□ -0.2
LSM3-201ENST00000306024 LAMC1P11047 1609 aa13.82□□□□□ -0.2
LSM3-201ENST00000306024 KIAA1210Q9ULL0 1709 aa13.82□□□□□ -0.2
LSM3-201ENST00000306024 ADGRB1O14514 1584 aa13.82□□□□□ -0.2
LSM3-201ENST00000306024 LTV1Q96GA3 475 aaPredicted RBP13.82□□□□□ -0.2
LSM3-201ENST00000306024 ARID3AQ99856 593 aa13.82□□□□□ -0.2
LSM3-201ENST00000306024 MYH16Q9H6N6 1097 aa13.81□□□□□ -0.2
LSM3-201ENST00000306024 FAM135BQ49AJ0 1406 aa13.81□□□□□ -0.2
LSM3-201ENST00000306024 PIK3R4Q99570 1358 aa13.81□□□□□ -0.2
LSM3-201ENST00000306024 FYB1O15117 783 aa13.81□□□□□ -0.2
LSM3-201ENST00000306024 CADPS2Q86UW7 1296 aa13.81□□□□□ -0.2
LSM3-201ENST00000306024 PNISRQ8TF01 805 aaKnown RBP13.81□□□□□ -0.2
LSM3-201ENST00000306024 KDM5AP29375 1690 aaKnown RBP13.8□□□□□ -0.2
LSM3-201ENST00000306024 ASXL1Q8IXJ9 1541 aa13.8□□□□□ -0.2
LSM3-201ENST00000306024 ADAMTS8Q9UP79 889 aa13.8□□□□□ -0.2
LSM3-201ENST00000306024 DIAPH1O60610 1272 aaKnown RBP13.79□□□□□ -0.2
LSM3-201ENST00000306024 MSH6P52701 1360 aa13.79□□□□□ -0.2
LSM3-201ENST00000306024 RRS1Q15050 365 aaKnown RBP13.79□□□□□ -0.2
LSM3-201ENST00000306024 FBLN1P23142 703 aa13.78□□□□□ -0.2
LSM3-201ENST00000306024 UBR1Q8IWV7 1749 aa13.78□□□□□ -0.2
LSM3-201ENST00000306024 ZRANB1Q9UGI0 708 aa13.78□□□□□ -0.2
LSM3-201ENST00000306024 PARD3Q8TEW0 1356 aa13.78□□□□□ -0.2
LSM3-201ENST00000306024 IQGAP1P46940 1657 aa13.78□□□□□ -0.2
LSM3-201ENST00000306024 MYO3AQ8NEV4 1616 aa13.77□□□□□ -0.2
LSM3-201ENST00000306024 TTC21BQ7Z4L5 1316 aa13.77□□□□□ -0.21
LSM3-201ENST00000306024 PRR36Q9H6K5 1346 aa13.77□□□□□ -0.21
LSM3-201ENST00000306024 ARHGAP23Q9P227 1491 aa13.77□□□□□ -0.21
LSM3-201ENST00000306024 SLIT1O75093 1534 aa13.77□□□□□ -0.21
LSM3-201ENST00000306024 ORAI2Q96SN7 254 aa13.77□□□□□ -0.21
LSM3-201ENST00000306024 QRICH2Q9H0J4 1663 aa13.76□□□□□ -0.21
LSM3-201ENST00000306024 TMEM94Q12767 1356 aa13.76□□□□□ -0.21
LSM3-201ENST00000306024 CENPQQ7L2Z9 268 aaPredicted RBP13.76□□□□□ -0.21
LSM3-201ENST00000306024 RRP7AQ9Y3A4 280 aaKnown RBP13.76□□□□□ -0.21
LSM3-201ENST00000306024 APAF1O14727 1248 aa13.76□□□□□ -0.21
LSM3-201ENST00000306024 ADAMTSL3P82987 1691 aa13.75□□□□□ -0.21
LSM3-201ENST00000306024 NSD2O96028 1365 aa13.75□□□□□ -0.21
LSM3-201ENST00000306024 PTPRUQ92729 1446 aa13.75□□□□□ -0.21
LSM3-201ENST00000306024 PDE3BQ13370 1112 aa13.75□□□□□ -0.21
LSM3-201ENST00000306024 IFT172Q9UG01 1749 aa13.75□□□□□ -0.21
LSM3-201ENST00000306024 ZNF335Q9H4Z2 1342 aaPredicted RBP13.75□□□□□ -0.21
LSM3-201ENST00000306024 CSB-PGBD3P0DP91 1061 aa13.75□□□□□ -0.21
LSM3-201ENST00000306024 KRT28Q7Z3Y7 464 aa13.74□□□□□ -0.21
LSM3-201ENST00000306024 PLEKHG3A1L390 1219 aa13.74□□□□□ -0.21
LSM3-201ENST00000306024 EMILIN1Q9Y6C2 1016 aa13.74□□□□□ -0.21
LSM3-201ENST00000306024 HMOX1P09601 288 aa13.74□□□□□ -0.21
LSM3-201ENST00000306024 RNF123Q5XPI4 1314 aa13.73□□□□□ -0.21
LSM3-201ENST00000306024 CDCA7LQ96GN5 454 aa13.72□□□□□ -0.21
LSM3-201ENST00000306024 TULP4Q9NRJ4 1543 aa13.72□□□□□ -0.21
LSM3-201ENST00000306024 DLC1Q96QB1 1528 aa13.72□□□□□ -0.21
LSM3-201ENST00000306024 NPC1L1Q9UHC9 1359 aa13.71□□□□□ -0.21
LSM3-201ENST00000306024 PIP4K2BP78356 416 aa13.71□□□□□ -0.21
LSM3-201ENST00000306024 MSNP26038 577 aaKnown RBP13.71□□□□□ -0.22
LSM3-201ENST00000306024 TTC21AQ8NDW8 1320 aa13.71□□□□□ -0.22
LSM3-201ENST00000306024 TECPR2O15040 1411 aa13.7□□□□□ -0.22
LSM3-201ENST00000306024 CLCN1P35523 988 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms